MELO3C006905.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006905.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Remorin
Location	chr06 : 7116141 .. 7116359 (-)
Sequence length	219

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGGAAGCAAAGGCTGATTTGGCGAAATTGAGACTGAAAGAGATGGAGAAAGTAAAAAACAAAGAGGCAGAGACTCATAAGGCAGTTGAATCAAAGAAAGCATCCATTGAAGCTAAAAGAGAGCTTAGAAAACTCAAGGTTGAAGAGAGAGCTAAAATGCATAGATGTACCAATACTGTTCCTAAAAAGTGTTTTGGCATTTGCAACGACTGA

mRNA sequence

ATGAATTTGGAAGCAAAGGCTGATTTGGCGAAATTGAGACTGAAAGAGATGGAGAAAGTAAAAAACAAAGAGGCAGAGACTCATAAGGCAGTTGAATCAAAGAAAGCATCCATTGAAGCTAAAAGAGAGCTTAGAAAACTCAAGGTTGAAGAGAGAGCTAAAATGCATAGATGTACCAATACTGTTCCTAAAAAGTGTTTTGGCATTTGCAACGACTGA

Coding sequence (CDS)

ATGAATTTGGAAGCAAAGGCTGATTTGGCGAAATTGAGACTGAAAGAGATGGAGAAAGTAAAAAACAAAGAGGCAGAGACTCATAAGGCAGTTGAATCAAAGAAAGCATCCATTGAAGCTAAAAGAGAGCTTAGAAAACTCAAGGTTGAAGAGAGAGCTAAAATGCATAGATGTACCAATACTGTTCCTAAAAAGTGTTTTGGCATTTGCAACGACTGA

Protein sequence

MNLEAKADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCFGICND

Homology

[Close]

BLAST of MELO3C006905.2.1 vs. NCBI nr
Match: XP_004140841.1 (PREDICTED: remorin-like [Cucumis sativus] >KGN57373.1 hypothetical protein Csa_3G182090 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 50/66 (75.76%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 7   ADLAKLRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKKC 66
           ADL KLRL+ MEKVKNKEAETHKA       XXXXXXXXXXX     K+HRCTNTVPKKC
Sbjct: 61  ADLVKLRLRGMEKVKNKEAETHKAXXXXXXXXXXXXXXXXXXXXXXXKVHRCTNTVPKKC 120

Query: 67  FGICND 73
           FGICND
Sbjct: 121 FGICND 126

[Close]

BLAST of MELO3C006905.2.1 vs. NCBI nr
Match: XP_011030105.1 (PREDICTED: uncharacterized protein LOC105129652 isoform X1 [Populus euphratica])

HSP 1 Score: 59.3 bits (142), Expect = 6.2e-06
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 3   LEAKADLAKLRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTV 62
           ++ +A+L  +R  + EK+KN+EA+  KA+E KKA+           + E+A  HR  NT+
Sbjct: 207 MKIEAELESIRQHKHEKIKNEEAQMQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTL 266

Query: 63  PKKCFGICND 73
           P KCFGIC D
Sbjct: 267 PMKCFGICTD 276

[Close]

BLAST of MELO3C006905.2.1 vs. NCBI nr
Match: XP_011030107.1 (PREDICTED: transmembrane ascorbate ferrireductase 1-like isoform X3 [Populus euphratica])

HSP 1 Score: 58.9 bits (141), Expect = 8.1e-06
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 6   KADLAKLRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKK 65
           +A+L  +R  + EK+KN+EA+  KA+E KKA+           + E+A  HR  NT+P K
Sbjct: 131 QAELESIRQHKHEKIKNEEAQMQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMK 190

Query: 66  CFGICND 73
           CFGIC D
Sbjct: 191 CFGICTD 197

[Close]

BLAST of MELO3C006905.2.1 vs. NCBI nr
Match: XP_024438028.1 (transmembrane ascorbate ferrireductase 1 isoform X3 [Populus trichocarpa])

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 6   KADLAKLRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKK 65
           +A+L  +R  + EK+KN+EA+  KA+E KKA+           + E+A  HR  NT+P K
Sbjct: 131 QAELESIRQHKHEKIKNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMK 190

Query: 66  CFGICND 73
           CFGIC D
Sbjct: 191 CFGICAD 197

[Close]

BLAST of MELO3C006905.2.1 vs. NCBI nr
Match: PNT11038.1 (hypothetical protein POPTR_012G140900v3, partial [Populus trichocarpa])

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 12  LRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKKCFGICN 71
           +R  + EK+KN+EA+  KA+E KKA+           + E+A  HR  NT+P KCFGIC 
Sbjct: 62  IRQHKHEKIKNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMKCFGICA 121

Query: 72  D 73
           D
Sbjct: 122 D 122

[Close]

BLAST of MELO3C006905.2.1 vs. TrEMBL
Match: tr|A0A0A0L6I9|A0A0A0L6I9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 50/66 (75.76%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 7   ADLAKLRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKKC 66
           ADL KLRL+ MEKVKNKEAETHKA       XXXXXXXXXXX     K+HRCTNTVPKKC
Sbjct: 61  ADLVKLRLRGMEKVKNKEAETHKAXXXXXXXXXXXXXXXXXXXXXXXKVHRCTNTVPKKC 120

Query: 67  FGICND 73
           FGICND
Sbjct: 121 FGICND 126

[Close]

BLAST of MELO3C006905.2.1 vs. TrEMBL
Match: tr|A0A2K1YDD2|A0A2K1YDD2_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_012G140900v3 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.7e-05
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 12  LRLKEMEKVKNKEAETHKAVESKKASXXXXXXXXXXXVEERAKMHRCTNTVPKKCFGICN 71
           +R  + EK+KN+EA+  KA+E KKA+           + E+A  HR  NT+P KCFGIC 
Sbjct: 62  IRQHKHEKIKNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMKCFGICA 121

Query: 72  D 73
           D
Sbjct: 122 D 122

The following BLAST results are available for this feature:

BLAST of MELO3C006905.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140841.1	2.4e-10	75.76	PREDICTED: remorin-like [Cucumis sativus] >KGN57373.1 hypothetical protein Csa_3...	[more]
XP_011030105.1	6.2e-06	41.43	PREDICTED: uncharacterized protein LOC105129652 isoform X1 [Populus euphratica]	[more]
XP_011030107.1	8.1e-06	43.28	PREDICTED: transmembrane ascorbate ferrireductase 1-like isoform X3 [Populus eup...	[more]
XP_024438028.1	1.4e-05	43.28	transmembrane ascorbate ferrireductase 1 isoform X3 [Populus trichocarpa]	[more]
PNT11038.1	1.2e-04	44.26	hypothetical protein POPTR_012G140900v3, partial [Populus trichocarpa]	[more]

BLAST of MELO3C006905.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C006905.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C006905.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6I9\|A0A0A0L6I9_CUCSA	1.6e-10	75.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=4 SV=1	[more]
tr\|A0A2K1YDD2\|A0A2K1YDD2_POPTR	7.7e-05	44.26	Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_012G1...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006905.2	MELO3C006905.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006905.2.1.exon.1	MELO3C006905.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006905.2.1.CDS.1	MELO3C006905.2.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006905.2.1	MELO3C006905.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 6..65 e-value: 1.3E-6 score: 28.2
None	No IPR available	PANTHER	PTHR31775	FAMILY NOT NAMED	coord: 5..70
None	No IPR available	PANTHER	PTHR31775:SF5	REMORIN FAMILY PROTEIN-RELATED	coord: 5..70