Cla97C05G090080 (gene) Watermelon (97103) v2

Overview
NameCla97C05G090080
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionremorin-like
LocationCla97Chr05 : 8238571 .. 8240635 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAAGTTTTTCTTTTTCCTTAATCTACTATTTTTTTTAATATTTTAAAGACTTTTAGATATTTGTACAACAAAATATATGAAGATGTGTATATTTTCAAATCTCTATGTTTAAGATTTTATATTACTATTTCCTAAATAAAAAAATAAAAAAATCTATTACTAAACATAAAATTTTACTTTCATCATGTTAAATAGCAAACTATATATAACTAAGGCTACATTTTCAATCAATCTTAATATGAAGGGGGGGGTTTTTTAAAATGCATTCCCAGAAAATAAGAATAATATAGAAATTATCTTAAATGAAAAAAAAATTGAAAATATTTACAAATAATAACAAAATATCATAGTCTATCGTGGTCTATCGAAAATAAACAATAAAATTTGGCTATGTTTGTAAATATTTTGGTTCATTTTTCAATATTTAAAAACAACCCTTAATAATATTTTGTGAATTATGAATAATAAAAAAAATTTTGTGGAATGAATATTTTTGTTTTATAACCTTGATGTGATTATTGATTATTGTTTTGAATTTATAGCTATAATTATAATTAATGTATTTATGCAATTCAAAATAAAATTTAGAAATTAATAATTATGTTTAAAATGCTAGCGGAGAGCACAAGTGATGGGAAGAAGATCGAAATAAAAATTCAAGCTTGGGAAGATAGAGAAAAGACCAAAGCCGATAACAAGTAAGTTCTCTCTTCATTTTATTAATATCTTTTTCGGTAATTTTTTGTTTTTTTAAGAGTAATTTTATAGTTCAAAAACACGACTTTGACTTGGTTGTATTGATAATATTTTTCCTAATTGAGTTATGTTTGTTAAATAAATAGTGATGATAAAAAATTTAAAAAAAAAAATTTGCTAAAAGTTATGTCCAATTACAAATCTAAGCTTAGTTGTAACATAGATGATAGACCCAATAATATTTTAGTTTAATATTTTTGTCCATAAACAAAAGTTTTTCTTTCGCTTTTTTCTTTTCTTTTCACAATTGGCAATTTTTCGAATAATTGGTATTGCTATTTACTTAAAAAATTTTGGAAGGGAATCTAAAAATAGATTTAGAAATTAAATTTTAATTTAAACAGTTTATCAAAATGTATTTGATAATCTATTTATAAATCATAAAATTAATTATAATTATATTAGTTTGAATATAAATTATTACTAATTAATTTATGATTAATTTTTTAAAAAATTATTATTTTATAATATTATATAAATATATTATTATATATTTTAATTCAACAAAAATAGTTGATTTTATAAAATAAAATACTATATTTGTTAATATTTTTATATATTTCTATATAATTATGCATTCTCAAAATTCAAATTCTAAATACATTAAAAACAAATTTTCATCTTTTTAGAAATTGCATTGTTTGAACATATAATTCGAAAATAGTTCTAAAAAACAGAATCCAGACTCATTAATTTACGAGTTGTTTTCAAATATAGAAAACATAATCTAAAATGTCTACTAAACTCATTAATTTACGAGAAAAAAGAACAAACATAGAGATCATAGACACAAAAAAGAACAACAATATAAAATAATAATAATAATAACTTGAAATGTGAATTATTCTAAGACATGTTCGAGGGTGATTCTAAAATTAAAATCACTCCAAAATATGCAAACCTACCTTACACTAAGGTAAAGTGTTTGTATAAATTGTGCAGAGCTGAAAGGAAGTTGGCTTCTACTGAGGTATGGAAGAGCACAAAGAAAGCTGCTTTGGAAGCCGAAGTGAAGAAGATAGATGTAAATTAATTTCTTTTTTCCGTGTCCTTTGATTGTGAGTTTTTGAATTAATATTCTAATTATATATTATATGGATAAGGCTGGGTTGGAGAAGTTGAGATTAAAGGAGATGGAGAAGGTTAAAAACAAAGAGGCTGAGACCCATAAGGCAGTTGAATCAAAGAAGGCATCCATTGAAGCAAAAAGAGAGCAGCAAAAACAAAGGGTTGAAGAGAAAGCTGCCAAGCATAGATCTACCAATACAATTCCAACTAAGTGTTTTGGCATTTGCAATGACTGA

mRNA sequence

ATGTCGGAGAGCACAAGTGATGGGAAGAAGATCGAAATAAAAATTCAAGCTTGGGAAGATAGAGAAAAGACCAAAGCCGATAACAAAGCTGAAAGGAAGTTGGCTTCTACTGAGGTATGGAAGAGCACAAAGAAAGCTGCTTTGGAAGCCGAAGTGAAGAAGATAGATGCTGGGTTGGAGAAGTTGAGATTAAAGGAGATGGAGAAGGTTAAAAACAAAGAGGCTGAGACCCATAAGGCAGTTGAATCAAAGAAGGCATCCATTGAAGCAAAAAGAGAGCAGCAAAAACAAAGGGTTGAAGAGAAAGCTGCCAAGCATAGATCTACCAATACAATTCCAACTAAGTGTTTTGGCATTTGCAATGACTGA

Coding sequence (CDS)

ATGTCGGAGAGCACAAGTGATGGGAAGAAGATCGAAATAAAAATTCAAGCTTGGGAAGATAGAGAAAAGACCAAAGCCGATAACAAAGCTGAAAGGAAGTTGGCTTCTACTGAGGTATGGAAGAGCACAAAGAAAGCTGCTTTGGAAGCCGAAGTGAAGAAGATAGATGCTGGGTTGGAGAAGTTGAGATTAAAGGAGATGGAGAAGGTTAAAAACAAAGAGGCTGAGACCCATAAGGCAGTTGAATCAAAGAAGGCATCCATTGAAGCAAAAAGAGAGCAGCAAAAACAAAGGGTTGAAGAGAAAGCTGCCAAGCATAGATCTACCAATACAATTCCAACTAAGTGTTTTGGCATTTGCAATGACTGA

Protein sequence

MSESTSDGKKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEKVKNKEAETHKAVESKKASIEAKREQQKQRVEEKAAKHRSTNTIPTKCFGICND
Homology
[Close]
BLAST of Cla97C05G090080 vs. NCBI nr
Match: XP_004140841.1 (PREDICTED: remorin-like [Cucumis sativus] >KGN57373.1 hypothetical protein Csa_3G182090 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-22
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 0 

Query: 4   STSDGKKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLR 63
           S +D +KIEIKIQ WEDREK KADNKAER+LASTE WK++KKAALEAEVKKIDA L KLR
Sbjct: 8   SATDRRKIEIKIQVWEDREKIKADNKAERRLASTEAWKNSKKAALEAEVKKIDADLVKLR 67

Query: 64  LKEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKHRSTNTIPTKCFGICND 123
           L+ ME            XXXXXXXXXXXXXXXXXXXXXX   HR TNT+P KCFGICND
Sbjct: 68  LRGMEKVKNKEAETHKAXXXXXXXXXXXXXXXXXXXXXXXKVHRCTNTVPKKCFGICND 126

[Close]
BLAST of Cla97C05G090080 vs. NCBI nr
Match: XP_017973082.1 (PREDICTED: remorin-like [Theobroma cacao])

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 39/112 (34.82%), Postives = 56/112 (50.00%), Query Frame = 0 

Query: 9   KKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEME 68
           +++E KI AW +REK K D+KA+RK+A T+ W+   KA  EA+ K I+   EKL+  ++E
Sbjct: 19  QQLESKINAWREREKAKVDHKADRKMAETQSWQEEMKACNEAKSKMIEVSAEKLKKLKIE 78

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKHRSTNTIPTKCFGIC 121
                                             A K+R+TNT+P  CFGIC
Sbjct: 79  QLKNKEAQVQKTVAEKKASIEAQREKGKIAIDDKAEKYRATNTLPKTCFGIC 130

[Close]
BLAST of Cla97C05G090080 vs. NCBI nr
Match: XP_008376573.1 (PREDICTED: remorin-like [Malus domestica])

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 39/108 (36.11%), Postives = 54/108 (50.00%), Query Frame = 0 

Query: 15  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEXXXXXX 74
           I+ WE+++KTK DNKA ++LA  E  K+  +  LEAE KKI+  +EK R +E+E      
Sbjct: 74  IKTWEEKQKTKVDNKANKRLAINEERKNADQIDLEAEEKKIETKVEKHRHRELEKLKNKE 133

Query: 75  XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKHRSTNTIPTKCFGICND 123
                                       A K R+ NT+PTKCFG+C D
Sbjct: 134 AHSAKIIEDSKVRIEAKRNKGHLNVEKKADKFRNANTLPTKCFGMCVD 181

[Close]
BLAST of Cla97C05G090080 vs. NCBI nr
Match: XP_018506228.1 (PREDICTED: remorin-like [Pyrus x bretschneideri])

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 39/108 (36.11%), Postives = 54/108 (50.00%), Query Frame = 0 

Query: 15  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEXXXXXX 74
           I+ WE+++KTK DNKA ++LA  E  K+  +  LEAE KKI+  +EK R +E+E      
Sbjct: 17  IKTWEEKQKTKVDNKANKRLAINEERKNADQIDLEAEEKKIETKVEKHRHRELEKLKNKE 76

Query: 75  XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKHRSTNTIPTKCFGICND 123
                                       A K R+ NT+PTKCFG+C D
Sbjct: 77  AHSAKIIEDSKVRIEAKRNKEHLSVEKKADKFRNANTLPTKCFGMCVD 124

[Close]
BLAST of Cla97C05G090080 vs. NCBI nr
Match: XP_009349346.2 (PREDICTED: remorin-like [Pyrus x bretschneideri])

HSP 1 Score: 63.5 bits (153), Expect = 5.6e-07
Identity = 39/108 (36.11%), Postives = 53/108 (49.07%), Query Frame = 0 

Query: 15  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEXXXXXX 74
           I+ WE+++KTK DNKA ++LA  E  K+  +  LEAE KKI+  +EK R  E+E      
Sbjct: 72  IKTWEEKQKTKVDNKANKRLAINEERKNADQIDLEAEEKKIETKVEKHRHXELEKLKNKE 131

Query: 75  XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKHRSTNTIPTKCFGICND 123
                                       A K R+ NT+PTKCFG+C D
Sbjct: 132 AHSAKIIEDSKVRIEAKRNKEHLSVEKKADKFRNANTLPTKCFGMCVD 179

[Close]
BLAST of Cla97C05G090080 vs. TrEMBL
Match: tr|A0A0A0L6I9|A0A0A0L6I9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 0 

Query: 4   STSDGKKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLR 63
           S +D +KIEIKIQ WEDREK KADNKAER+LASTE WK++KKAALEAEVKKIDA L KLR
Sbjct: 8   SATDRRKIEIKIQVWEDREKIKADNKAERRLASTEAWKNSKKAALEAEVKKIDADLVKLR 67

Query: 64  LKEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKHRSTNTIPTKCFGICND 123
           L+ ME            XXXXXXXXXXXXXXXXXXXXXX   HR TNT+P KCFGICND
Sbjct: 68  LRGMEKVKNKEAETHKAXXXXXXXXXXXXXXXXXXXXXXXKVHRCTNTVPKKCFGICND 126

[Close]
BLAST of Cla97C05G090080 vs. TrEMBL
Match: tr|A0A061G0V6|A0A061G0V6_THECC (Remorin family protein OS=Theobroma cacao OX=3641 GN=TCM_015160 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 36/109 (33.03%), Postives = 53/109 (48.62%), Query Frame = 0 

Query: 9   KKIEIKIQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEME 68
           +++E KI AW +REK K D+KA+RK+A T+ W+   KA  EA+ K I+   EKL+  ++E
Sbjct: 19  QQLESKINAWREREKAKVDHKADRKMAETQSWQEEMKACNEAKSKMIEVSAEKLKKLKIE 78

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKHRSTNTIPTKCF 118
                                             A K+R+TNT+P  CF
Sbjct: 79  QLKNKEAQVQKTVAEKKASIEAQREKGKIAIDDKAEKYRATNTLPKTCF 127

[Close]
BLAST of Cla97C05G090080 vs. TrEMBL
Match: tr|A0A2J6M4A4|A0A2J6M4A4_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X5760 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-05
Identity = 37/107 (34.58%), Postives = 52/107 (48.60%), Query Frame = 0 

Query: 15  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEXXXXXX 74
           I+AWE+ EKTKADN+A  K +    W++TKKA +EA +K+I+  +E  + K+ E      
Sbjct: 55  IKAWEENEKTKADNRAYTKKSEIGAWENTKKAMIEANLKQIEENIEIEKAKKREEMKNRM 114

Query: 75  XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKHRSTNTIPT---KCFG 119
                                       AAK R+T T+PT   KCFG
Sbjct: 115 AGVHKEAEEKRAMVEEKRGQDIIKAEEAAAKFRATGTLPTKLFKCFG 161

[Close]
BLAST of Cla97C05G090080 vs. TrEMBL
Match: tr|A0A103XG92|A0A103XG92_CYNCS (Remorin, C-terminal OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_007915 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.5e-05
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 0 

Query: 15  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEXXXXXX 74
           I+AWE+ EKTKADNKA  K+ +   W+++K+A +EA +KKI+  +E  ++K+ E      
Sbjct: 64  IKAWEENEKTKADNKAYTKVLAIGAWENSKRAEVEANLKKIEVDIENEKVKQREIMKMKM 123

Query: 75  XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKHRSTNTIPT---KCFG 119
                                       AAK  +T T+P+   KCFG
Sbjct: 124 ATVQKEAEEKRAAIEAKKGQDIINAEQLAAKFHATGTLPSKLFKCFG 170

[Close]
BLAST of Cla97C05G090080 vs. TrEMBL
Match: tr|A0A251UAU5|A0A251UAU5_HELAN (Putative remorin OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr07g0187071 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 34/107 (31.78%), Postives = 54/107 (50.47%), Query Frame = 0 

Query: 15  IQAWEDREKTKADNKAERKLASTEVWKSTKKAALEAEVKKIDAGLEKLRLKEMEXXXXXX 74
           I+AWE+ EKT+ADNKA  K+++   W++TK+A +EA++K+I+  +E  + K+ E      
Sbjct: 66  IKAWEENEKTRADNKAYTKISAIGAWENTKRAEIEADLKQIEEDIEIEKAKQREKMKNRM 125

Query: 75  XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKHRSTNTIPT---KCFG 119
                                       AAK  +T T+P+   KCFG
Sbjct: 126 AAVHKEAEEKRAAIIAKKGQDLIKVEEAAAKFHATGTLPSRLFKCFG 172

The following BLAST results are available for this feature:
BLAST of Cla97C05G090080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140841.12.7e-2273.11PREDICTED: remorin-like [Cucumis sativus] >KGN57373.1 hypothetical protein Csa_3... [more]
XP_017973082.12.3e-0834.82PREDICTED: remorin-like [Theobroma cacao][more]
XP_008376573.12.5e-0736.11PREDICTED: remorin-like [Malus domestica][more]
XP_018506228.12.5e-0736.11PREDICTED: remorin-like [Pyrus x bretschneideri][more]
XP_009349346.25.6e-0736.11PREDICTED: remorin-like [Pyrus x bretschneideri][more]
BLAST of Cla97C05G090080 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6I9|A0A0A0L6I9_CUCSA1.8e-2273.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=4 SV=1[more]
tr|A0A061G0V6|A0A061G0V6_THECC2.4e-0633.03Remorin family protein OS=Theobroma cacao OX=3641 GN=TCM_015160 PE=4 SV=1[more]
tr|A0A2J6M4A4|A0A2J6M4A4_LACSA2.6e-0534.58Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X5760 PE=4 SV=1[more]
tr|A0A103XG92|A0A103XG92_CYNCS4.5e-0532.71Remorin, C-terminal OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_007915 ... [more]
tr|A0A251UAU5|A0A251UAU5_HELAN1.0e-0431.78Putative remorin OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr07g0187071 PE=4 SV=1[more]
BLAST of Cla97C05G090080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G090080 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005516Remorin_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G090080.1Cla97C05G090080.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 45..65
NoneNo IPR availableCOILSCoilCoilcoord: 78..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..108
NoneNo IPR availablePANTHERPTHR31775FAMILY NOT NAMEDcoord: 13..120
NoneNo IPR availablePANTHERPTHR31775:SF5REMORIN FAMILY PROTEIN-RELATEDcoord: 13..120
IPR005516Remorin, C-terminalPFAMPF03763Remorin_Ccoord: 10..115
e-value: 3.6E-20
score: 71.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G090080MELO3C006905Melon (DHL92) v3.5.1mewmbB434
Cla97C05G090080MELO3C006905.2Melon (DHL92) v3.6.1medwmbB423
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G090080Watermelon (97103) v2wmbwmbB130
Cla97C05G090080Silver-seed gourdcarwmbB0743
Cla97C05G090080Silver-seed gourdcarwmbB0772
Cla97C05G090080Silver-seed gourdcarwmbB0969
Cla97C05G090080Silver-seed gourdcarwmbB1042
Cla97C05G090080Cucumber (Gy14) v2cgybwmbB196
Cla97C05G090080Cucumber (Gy14) v1cgywmbB147
Cla97C05G090080Cucumber (Gy14) v1cgywmbB522
Cla97C05G090080Cucurbita maxima (Rimu)cmawmbB346
Cla97C05G090080Cucurbita maxima (Rimu)cmawmbB424
Cla97C05G090080Cucurbita maxima (Rimu)cmawmbB649
Cla97C05G090080Cucurbita moschata (Rifu)cmowmbB331
Cla97C05G090080Cucurbita moschata (Rifu)cmowmbB404
Cla97C05G090080Cucurbita moschata (Rifu)cmowmbB621
Cla97C05G090080Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G090080Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G090080Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G090080Bottle gourd (USVL1VR-Ls)lsiwmbB334
Cla97C05G090080Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G090080Watermelon (97103) v1wmwmbB206
Cla97C05G090080Wax gourdwgowmbB192