MELO3C006905 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006905
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Remorin family protein
Location	chr6 : 7117125 .. 7117343 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGGAAGCAAAGGCTGATTTGGCGAAATTGAGACTGAAAGAGATGGAGAAAGTAAAAAACAAAGAGGCAGAGACTCATAAGGCAGTTGAATCAAAGAAAGCATCCATTGAAGCTAAAAGAGAGCTTAGAAAACTCAAGGTTGAAGAGAGAGCTAAAATGCATAGATGTACCAATACTGTTCCTAAAAAGTGTTTTGGCATTTGCAACGACTGA

mRNA sequence

ATGAATTTGGAAGCAAAGGCTGATTTGGCGAAATTGAGACTGAAAGAGATGGAGAAAGTAAAAAACAAAGAGGCAGAGACTCATAAGGCAGTTGAATCAAAGAAAGCATCCATTGAAGCTAAAAGAGAGCTTAGAAAACTCAAGGTTGAAGAGAGAGCTAAAATGCATAGATGTACCAATACTGTTCCTAAAAAGTGTTTTGGCATTTGCAACGACTGA

Coding sequence (CDS)

ATGAATTTGGAAGCAAAGGCTGATTTGGCGAAATTGAGACTGAAAGAGATGGAGAAAGTAAAAAACAAAGAGGCAGAGACTCATAAGGCAGTTGAATCAAAGAAAGCATCCATTGAAGCTAAAAGAGAGCTTAGAAAACTCAAGGTTGAAGAGAGAGCTAAAATGCATAGATGTACCAATACTGTTCCTAAAAAGTGTTTTGGCATTTGCAACGACTGA

Protein sequence

MNLEAKADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCFGICND*

Homology

[Close]

BLAST of MELO3C006905 vs. Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07
Identity = 35/73 (47.95%), Postives = 39/73 (53.42%), Query Frame = 1


Query: 2   NLEAKA-----DLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMH 61
           NLEA+       L K + +  EK+KNK A  HK  E K+A IEAKR    LK EE A  +
Sbjct: 125 NLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKY 184

Query: 62  RCTNTVPKKCFGI 70
           R T T PKK  GI
Sbjct: 185 RATGTAPKKILGI 197

[Close]

BLAST of MELO3C006905 vs. TrEMBL
Match: A0A0A0L6I9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182090 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-25
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1


Query: 7   ADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKC 66
           ADL KLRL+ MEKVKNKEAETHKAVESKKASIEAKREL+KLKVE +AK+HRCTNTVPKKC
Sbjct: 61  ADLVKLRLRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKAKVHRCTNTVPKKC 120

Query: 67  FGICND 73
           FGICND
Sbjct: 121 FGICND 126

[Close]

BLAST of MELO3C006905 vs. TrEMBL
Match: B9I495_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13220g PE=4 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 8.8e-11
Identity = 32/70 (45.71%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 3   LEAKADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTV 62
           ++ +A+L  +R  + EK+KN+EA+  KA+E KKA+I+A+ + + L++ E+A  HR  NT+
Sbjct: 48  MKIEAELESIRQHKHEKIKNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTL 107

Query: 63  PKKCFGICND 73
           P KCFGIC D
Sbjct: 108 PMKCFGICAD 117

[Close]

BLAST of MELO3C006905 vs. TrEMBL
Match: M5XGF5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019961mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.8e-09
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 11 KLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCFGIC 70
          KLR KE+EK+KNKEA + K +E  K  IEAKR     KVE++A+  R +N++P KCFG+C
Sbjct: 5  KLRHKELEKMKNKEAHSIKVIEDTKVKIEAKRTHGLQKVEKKAEKFRGSNSLPTKCFGVC 64

Query: 71 ND 73
           D
Sbjct: 65 VD 66

[Close]

BLAST of MELO3C006905 vs. TrEMBL
Match: A0A061G0V6_THECC (Remorin family protein OS=Theobroma cacao GN=TCM_015160 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-08
Identity = 29/57 (50.88%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 11  KLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCF 68
           KL+  ++E++KNKEA+  K V  KKASIEA+RE  K+ ++++A+ +R TNT+PK CF
Sbjct: 71  KLKKLKIEQLKNKEAQVQKTVAEKKASIEAQREKGKIAIDDKAEKYRATNTLPKTCF 127

[Close]

BLAST of MELO3C006905 vs. TrEMBL
Match: A0A061G0V6_THECC (Remorin family protein OS=Theobroma cacao GN=TCM_015160 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-04
Identity = 29/60 (48.33%), Postives = 34/60 (56.67%), Query Frame = 1


Query: 9   LAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCFG 68
           L K + + +EK+KNK A  HK  E KKA +EAKR    LK EE A   R   T PKK  G
Sbjct: 347 LEKQKAEYVEKMKNKVALIHKEAEEKKAIVEAKRGEDLLKAEETAAKFRAKGTTPKKVLG 406

HSP 2 Score: 62.8 bits (151), Expect = 2.0e-07
Identity = 33/58 (56.90%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 11  KLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCFG 69
           K + + +EK+KNK A  HK  E KKA IEAKR   KLK EE A  HR T T PKK FG
Sbjct: 144 KKKGEHIEKMKNKIASIHKKAEEKKAVIEAKRGEEKLKAEEIAAKHRATGTAPKKIFG 201

[Close]

BLAST of MELO3C006905 vs. TAIR10
Match: AT5G23750.1 (AT5G23750.1 Remorin family protein)

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-09
Identity = 30/60 (50.00%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 9   LAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCFG 68
           L K + + +E++KNK A+ HK  E K+A IEAKR    LK EE A  +R T T PKK FG
Sbjct: 141 LEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFG 200

[Close]

BLAST of MELO3C006905 vs. TAIR10
Match: AT3G48940.1 (AT3G48940.1 Remorin family protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.4e-07
Identity = 28/60 (46.67%), Postives = 32/60 (53.33%), Query Frame = 1


Query: 9   LAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCFG 68
           L K +    E++KNK A+ HK  E K+A  EAKR    LK EE A  +R T T P K FG
Sbjct: 114 LNKKKAHYTEQMKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFG 173

[Close]

BLAST of MELO3C006905 vs. TAIR10
Match: AT3G61260.1 (AT3G61260.1 Remorin family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-06
Identity = 27/60 (45.00%), Postives = 32/60 (53.33%), Query Frame = 1


Query: 9   LAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCFG 68
           L K + +  E++KNK A  HK  E ++A IEAKR    LK EE A  +R T  VPK   G
Sbjct: 151 LEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCG 210

[Close]

BLAST of MELO3C006905 vs. TAIR10
Match: AT2G45820.1 (AT2G45820.1 Remorin family protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.5e-06
Identity = 26/60 (43.33%), Postives = 31/60 (51.67%), Query Frame = 1


Query: 9   LAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKCFG 68
           L K + +  EK+KNK A  HK  E K+A +EAK+    LK EE    +R T  VPK   G
Sbjct: 129 LEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCG 188

[Close]

BLAST of MELO3C006905 vs. NCBI nr
Match: gi|449446163|ref|XP_004140841.1| (PREDICTED: remorin-like [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-25
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1


Query: 7   ADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKKC 66
           ADL KLRL+ MEKVKNKEAETHKAVESKKASIEAKREL+KLKVE +AK+HRCTNTVPKKC
Sbjct: 61  ADLVKLRLRGMEKVKNKEAETHKAVESKKASIEAKRELKKLKVEGKAKVHRCTNTVPKKC 120

Query: 67  FGICND 73
           FGICND
Sbjct: 121 FGICND 126

[Close]

BLAST of MELO3C006905 vs. NCBI nr
Match: gi|743857151|ref|XP_011030105.1| (PREDICTED: uncharacterized protein LOC105129652 isoform X1 [Populus euphratica])

HSP 1 Score: 74.7 bits (182), Expect = 7.4e-11
Identity = 32/70 (45.71%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 3   LEAKADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTV 62
           ++ +A+L  +R  + EK+KN+EA+  KA+E KKA+I+A+ + + L++ E+A  HR  NT+
Sbjct: 207 MKIEAELESIRQHKHEKIKNEEAQMQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTL 266

Query: 63  PKKCFGICND 73
           P KCFGIC D
Sbjct: 267 PMKCFGICTD 276

[Close]

BLAST of MELO3C006905 vs. NCBI nr
Match: gi|566198277|ref|XP_002318223.2| (hypothetical protein POPTR_0012s13220g [Populus trichocarpa])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 32/70 (45.71%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 3   LEAKADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTV 62
           ++ +A+L  +R  + EK+KN+EA+  KA+E KKA+I+A+ + + L++ E+A  HR  NT+
Sbjct: 48  MKIEAELESIRQHKHEKIKNEEAQIQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTL 107

Query: 63  PKKCFGICND 73
           P KCFGIC D
Sbjct: 108 PMKCFGICAD 117

[Close]

BLAST of MELO3C006905 vs. NCBI nr
Match: gi|743857159|ref|XP_011030107.1| (PREDICTED: transmembrane ascorbate ferrireductase 1-like isoform X3 [Populus euphratica])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 6   KADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTVPKK 65
           +A+L  +R  + EK+KN+EA+  KA+E KKA+I+A+ + + L++ E+A  HR  NT+P K
Sbjct: 131 QAELESIRQHKHEKIKNEEAQMQKAMEQKKAAIDAQNQKKVLEITEKADKHRSNNTLPMK 190

Query: 66  CFGICND 73
           CFGIC D
Sbjct: 191 CFGICTD 197

[Close]

BLAST of MELO3C006905 vs. NCBI nr
Match: gi|645257094|ref|XP_008234254.1| (PREDICTED: remorin-like [Prunus mume])

HSP 1 Score: 68.6 bits (166), Expect = 5.3e-09
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 3   LEAKADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEERAKMHRCTNTV 62
           +E K +  KLR KE+EK+KNKEA + K +E  K  IEAKR     KVE++A+  R +N++
Sbjct: 57  IETKVE--KLRHKELEKMKNKEAHSIKVIEDTKVKIEAKRTHGLQKVEKKAEKFRGSNSL 116

Query: 63  PKKCFGICND 73
           P KCFG+C D
Sbjct: 117 PTKCFGVCVD 124

The following BLAST results are available for this feature:

BLAST of MELO3C006905 vs. Swiss-Prot


Match Name	E-value	Identity	Description
REMO_SOLTU	1.3e-07	47.95	Remorin OS=Solanum tuberosum PE=1 SV=1	[more]

BLAST of MELO3C006905 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I9_CUCSA	2.2e-25	89.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182090 PE=4 SV=1	[more]
B9I495_POPTR	8.8e-11	45.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13220g PE=4 SV=2	[more]
M5XGF5_PRUPE	4.8e-09	53.23	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019961mg PE=4 S...	[more]
A0A061G0V6_THECC	3.1e-08	50.88	Remorin family protein OS=Theobroma cacao GN=TCM_015160 PE=4 SV=1	[more]
A0A061G0V6_THECC	2.7e-04	48.33	Remorin family protein OS=Theobroma cacao GN=TCM_015160 PE=4 SV=1	[more]

BLAST of MELO3C006905 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23750.1	3.3e-09	50.00	Remorin family protein	[more]
AT3G48940.1	2.4e-07	46.67	Remorin family protein	[more]
AT3G61260.1	1.2e-06	45.00	Remorin family protein	[more]
AT2G45820.1	1.5e-06	43.33	Remorin family protein	[more]

BLAST of MELO3C006905 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446163\|ref\|XP_004140841.1\|	3.1e-25	89.39	PREDICTED: remorin-like [Cucumis sativus]	[more]
gi\|743857151\|ref\|XP_011030105.1\|	7.4e-11	45.71	PREDICTED: uncharacterized protein LOC105129652 isoform X1 [Populus euphratica]	[more]
gi\|566198277\|ref\|XP_002318223.2\|	1.3e-10	45.71	hypothetical protein POPTR_0012s13220g [Populus trichocarpa]	[more]
gi\|743857159\|ref\|XP_011030107.1\|	1.3e-10	47.76	PREDICTED: transmembrane ascorbate ferrireductase 1-like isoform X3 [Populus eup...	[more]
gi\|645257094\|ref\|XP_008234254.1\|	5.3e-09	50.00	PREDICTED: remorin-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006905T1	MELO3C006905T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 6..65 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006905	Cla006180	Watermelon (97103) v1	mewmB461
MELO3C006905	ClCG05G008040	Watermelon (Charleston Gray)	mewcgB427
MELO3C006905	Cla97C05G090080	Watermelon (97103) v2	mewmbB434
MELO3C006905	CSPI03G16920	Wild cucumber (PI 183967)	cpimeB230
MELO3C006905	Cucsa.107780	Cucumber (Gy14) v1	cgymeB142
MELO3C006905	CsGy3G017000	Cucumber (Gy14) v2	cgybmeB200

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006905	Silver-seed gourd	carmeB0498
MELO3C006905	Silver-seed gourd	carmeB0709
MELO3C006905	Silver-seed gourd	carmeB0732
MELO3C006905	Silver-seed gourd	carmeB0966
MELO3C006905	Cucumber (Chinese Long) v3	cucmeB236
MELO3C006905	Cucumber (Chinese Long) v3	cucmeB415
MELO3C006905	Watermelon (97103) v2	mewmbB424
MELO3C006905	Watermelon (97103) v2	mewmbB437
MELO3C006905	Wax gourd	mewgoB518
MELO3C006905	Wax gourd	mewgoB541
MELO3C006905	Melon (DHL92) v3.5.1	memeB015
MELO3C006905	Melon (DHL92) v3.5.1	memeB150
MELO3C006905	Cucumber (Gy14) v1	cgymeB438
MELO3C006905	Cucumber (Gy14) v1	cgymeB497
MELO3C006905	Cucurbita maxima (Rimu)	cmameB296
MELO3C006905	Cucurbita maxima (Rimu)	cmameB375
MELO3C006905	Cucurbita maxima (Rimu)	cmameB579
MELO3C006905	Cucurbita moschata (Rifu)	cmomeB289
MELO3C006905	Cucurbita moschata (Rifu)	cmomeB368
MELO3C006905	Cucurbita moschata (Rifu)	cmomeB567
MELO3C006905	Cucurbita moschata (Rifu)	cmomeB835
MELO3C006905	Wild cucumber (PI 183967)	cpimeB249
MELO3C006905	Cucumber (Chinese Long) v2	cumeB236
MELO3C006905	Cucumber (Chinese Long) v2	cumeB254
MELO3C006905	Cucumber (Chinese Long) v2	cumeB405
MELO3C006905	Watermelon (Charleston Gray)	mewcgB422
MELO3C006905	Watermelon (Charleston Gray)	mewcgB433
MELO3C006905	Watermelon (97103) v1	mewmB470
MELO3C006905	Cucurbita pepo (Zucchini)	cpemeB043
MELO3C006905	Cucurbita pepo (Zucchini)	cpemeB190
MELO3C006905	Cucurbita pepo (Zucchini)	cpemeB701
MELO3C006905	Bottle gourd (USVL1VR-Ls)	lsimeB375
MELO3C006905	Bottle gourd (USVL1VR-Ls)	lsimeB379
MELO3C006905	Cucumber (Gy14) v2	cgybmeB353