MELO3C015536.2 (gene) Melon (DHL92) v3.6.1
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACATTCTATAACCCACCAATCTTCTTTTACCTTTTTGGAGTCTCTCCGGCGCCCATGGCTCTCTCCATTTCTTCCACTGCGCTCTCCTCCTTCCCAATCAGGTCAACCCTAATTCACTTTTTTTTTTTTTCTTTTCTCTCATTCGTTTCTCCCAATTTCTCATTCATTCTCCTTTGTTCTCTTTTGACTACAGAGAATCCTCTCACAGAGCAAATTTTCCGGGAAACTTCCCAAATCATAAGCTCCGGCGAGATTACTCCGATTTAAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCCGATAGACCCCTCTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGGTTCATTAATTTATAGCTTATTTCACTCGTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGGTTCGTAGAATTGGAGATTTAAAGGTTAAACAATGGCTTTCGCCTCAACTTTAGCAACAGAAACAATTAATTTAGTACATTAATCTTTTTCAAATATGTAATGATTTCATTCTATGGTTTAAAAGTTCATCAAATTTTTTATGTCAAATTTTATTTATTTAAAATGTTCTTGTTTTGTTCTATTAGTTTAGTTTATGATCTTTGTATATATGCTCTCAATTTTATAACAATTTAATCTTCTGCCGAAGAATTCATCAAAATTCAATATCATTTTTTTTTTTACTTTTATGTATACTTTGCATTTTTACAAAACTAACGAGTTTCCATAATTTATATAATACTTACAAAATTTAAACTATAAATATTAAAAGGTTACATTGGAAAAATAAAAGTTTAAAAACTAGATCGTTACAGTTACAGTTTAAAGACTAAATTGTTACTTTTATAAAAGTTTTAGTGCAATTAGATTGAATTTCTAAACGTTTAGAAATAAACGTTTATAAACGTTTTTATTCTACTCGAAAAGTATGCACTTTTAAGTACTAAGAGTGATTGTTTAACTTTTGTTTGTTCCTTCGTAGCCTTCCCGGCGATTTTGGCTTTGATCCGCTTGGATTGGGTATGCTACTTTCCCTTTTTCTCTTTGATTCAAATTTAGTATTACTTTTAAAATACTACTTTTGGTTCTTCTCCTTGGAATAGAAACGTTGGTTGAGTTTGTGAGATATTTTCTTTTAGGTAGGAAATATGGCAGCAGGAGTGTGAGTATGAAAAGTTAAGAGTTTGTTGGAGAACCGAAATATAATATGGATTATTAAAAATAGGTGTCGGGATGTGTGAGGAATCGAAGACGAAGAAACGAAAATGAAATCGTAGAACATGAAAACAACAAAGAAAAAGATGATTGGATTGAAAACTGTATAAACAAAATGAGTTTTCTATAACAAACATATTTAAATTGAAAACTTTCAATCCAAACTAAACTCATAATGAATGTTTCATTACGGACTCTCAAATAGATTTATAGTGACTATTTAATGGGCTTAAGCAAACCACAGTCTATAGTATATCAAACAATAGCTTGAGTTTATAACTTGTATTTTATAGTGTTTTTATCCTTTTGAAAATCAATTTTTACAAATAGAATTGGAATCGTCAATCAAACTCATTTTTTGTCAAACTCAATACAAACATCAAAGTGATAATTGAAAATGTGGGTGTCAGGTTCGGACCCAGAGACACTAAAATGGTTCGCTCAAGCGGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCCGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAATTTCTCATGGTACGACGCCGGATCTCGAGAATATTTTGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCCGACTTGGTCAACCCGGGAAGTGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGTAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCTATGATGTGGGGGAGGGGGTCGCCGGAGCCGGTGATGGTGCTCAGGACTAAAGAGATTAAGAATGGGAGGTTGGCTATGTTGGCCTTCGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGGCCCCTTGAGAATCTTGCTGCACACGTCGCAGATCCCGGCCATTGCAATATCTTTTCGGTACGATTATCTTCCCTAATCAATAATGTGTTTCTCCTATCAGTACTATTGATTGCTAATAATAGAAATCCATTGATGTCTATCGTCAATGAAATCTAATATTTTGTAATATGTCATAAATATTTTAATTTATTTTATTATATTTAAAAGTATTTTTTTATTTGTAATTTTTTTTTATTTTTGAAAAGGAATATAAATAAAAACCATGATAGAAAAGAGCCTAAACTAGTACACTTTTGAAAATTCATAACTAAAATTAAAATAATTAGTTGAATAAGGTCAATTTGTTATTTAAGTTCAATTCACACGACTTGAAAATATGTTGAATTGGTATATAGTTTTTAATTTTGTATCTAATAAATAAATTTTAATTTTGAGTTCGATAAGGGCTTATGAGAATCGAGTATTTTTTTTTCTTTTATAAAATTTGTTAACTTATTATTATTATATTTTTTTTTTGCAGGCATTTACTTCTGGTTCGGGTTGAAATCGAAACTTTCATTTTGGTTCGGTTGAGATGGTGAAGTGTGTACATAAAGCAAAGAGATGAGAAGAATTTGTGATGGTTTACTATATATAACCCTATAAGTACTATTCAAACTCTTAAATGATAGATTCCTATCTTAAATCATTGAATGACGATCTAAAAATTTACGTAGATGAGTGAAAACAAATTTGATATCATATCATCTATTAGAACCAAAATTTTTCGTTT TACATTCTATAACCCACCAATCTTCTTTTACCTTTTTGGAGTCTCTCCGGCGCCCATGGCTCTCTCCATTTCTTCCACTGCGCTCTCCTCCTTCCCAATCAGAGAATCCTCTCACAGAGCAAATTTTCCGGGAAACTTCCCAAATCATAAGCTCCGGCGAGATTACTCCGATTTAAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCCGATAGACCCCTCTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTTGATCCGCTTGGATTGGGTTCGGACCCAGAGACACTAAAATGGTTCGCTCAAGCGGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCCGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAATTTCTCATGGTACGACGCCGGATCTCGAGAATATTTTGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCCGACTTGGTCAACCCGGGAAGTGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGTAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCTATGATGTGGGGGAGGGGGTCGCCGGAGCCGGTGATGGTGCTCAGGACTAAAGAGATTAAGAATGGGAGGTTGGCTATGTTGGCCTTCGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGGCCCCTTGAGAATCTTGCTGCACACGTCGCAGATCCCGGCCATTGCAATATCTTTTCGGCATTTACTTCTGGTTCGGGTTGAAATCGAAACTTTCATTTTGGTTCGGTTGAGATGGTGAAGTGTGTACATAAAGCAAAGAGATGAGAAGAATTTGTGATGGTTTACTATATATAACCCTATAAGTACTATTCAAACTCTTAAATGATAGATTCCTATCTTAAATCATTGAATGACGATCTAAAAATTTACGTAGATGAGTGAAAACAAATTTGATATCATATCATCTATTAGAACCAAAATTTTTCGTTT ATGGCTCTCTCCATTTCTTCCACTGCGCTCTCCTCCTTCCCAATCAGAGAATCCTCTCACAGAGCAAATTTTCCGGGAAACTTCCCAAATCATAAGCTCCGGCGAGATTACTCCGATTTAAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCCGATAGACCCCTCTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTTGATCCGCTTGGATTGGGTTCGGACCCAGAGACACTAAAATGGTTCGCTCAAGCGGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCCGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAATTTCTCATGGTACGACGCCGGATCTCGAGAATATTTTGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCCGACTTGGTCAACCCGGGAAGTGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGTAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCTATGATGTGGGGGAGGGGGTCGCCGGAGCCGGTGATGGTGCTCAGGACTAAAGAGATTAAGAATGGGAGGTTGGCTATGTTGGCCTTCGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGGCCCCTTGAGAATCTTGCTGCACACGTCGCAGATCCCGGCCATTGCAATATCTTTTCGGCATTTACTTCTGGTTCGGGTTGA MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFTSGSG
BLAST of MELO3C015536.2 vs. NCBI nr
Match: XP_008450947.1 (PREDICTED: photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis melo]) HSP 1 Score: 564.3 bits (1453), Expect = 2.2e-157 Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
BLAST of MELO3C015536.2 vs. NCBI nr
Match: XP_004144043.1 (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Cucumis sativus] >KGN66318.1 hypothetical protein Csa_1G597160 [Cucumis sativus]) HSP 1 Score: 551.6 bits (1420), Expect = 1.5e-153 Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 0
BLAST of MELO3C015536.2 vs. NCBI nr
Match: XP_022967968.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita maxima]) HSP 1 Score: 512.3 bits (1318), Expect = 9.8e-142 Identity = 242/266 (90.98%), Postives = 247/266 (92.86%), Query Frame = 0
BLAST of MELO3C015536.2 vs. NCBI nr
Match: XP_022929243.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita moschata]) HSP 1 Score: 511.5 bits (1316), Expect = 1.7e-141 Identity = 241/267 (90.26%), Postives = 248/267 (92.88%), Query Frame = 0
BLAST of MELO3C015536.2 vs. NCBI nr
Match: XP_023529387.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 508.1 bits (1307), Expect = 1.9e-140 Identity = 239/267 (89.51%), Postives = 247/267 (92.51%), Query Frame = 0
BLAST of MELO3C015536.2 vs. TAIR10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6) HSP 1 Score: 399.8 bits (1026), Expect = 1.3e-111 Identity = 190/271 (70.11%), Postives = 212/271 (78.23%), Query Frame = 0
BLAST of MELO3C015536.2 vs. TAIR10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2) HSP 1 Score: 319.3 bits (817), Expect = 2.2e-87 Identity = 136/206 (66.02%), Postives = 161/206 (78.16%), Query Frame = 0
BLAST of MELO3C015536.2 vs. TAIR10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4) HSP 1 Score: 213.4 bits (542), Expect = 1.7e-55 Identity = 109/229 (47.60%), Postives = 138/229 (60.26%), Query Frame = 0
BLAST of MELO3C015536.2 vs. TAIR10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5) HSP 1 Score: 188.0 bits (476), Expect = 7.7e-48 Identity = 104/255 (40.78%), Postives = 150/255 (58.82%), Query Frame = 0
BLAST of MELO3C015536.2 vs. TAIR10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3) HSP 1 Score: 169.1 bits (427), Expect = 3.7e-42 Identity = 94/220 (42.73%), Postives = 131/220 (59.55%), Query Frame = 0
BLAST of MELO3C015536.2 vs. Swiss-Prot
Match: sp|Q8LCQ4|LHCA6_ARATH (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 2.3e-110 Identity = 190/271 (70.11%), Postives = 212/271 (78.23%), Query Frame = 0
BLAST of MELO3C015536.2 vs. Swiss-Prot
Match: sp|P13869|CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1) HSP 1 Score: 322.8 bits (826), Expect = 3.6e-87 Identity = 139/206 (67.48%), Postives = 163/206 (79.13%), Query Frame = 0
BLAST of MELO3C015536.2 vs. Swiss-Prot
Match: sp|P10708|CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 1.4e-86 Identity = 140/225 (62.22%), Postives = 167/225 (74.22%), Query Frame = 0
BLAST of MELO3C015536.2 vs. Swiss-Prot
Match: sp|Q9SYW8|LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 4.0e-86 Identity = 136/206 (66.02%), Postives = 161/206 (78.16%), Query Frame = 0
BLAST of MELO3C015536.2 vs. Swiss-Prot
Match: sp|P27521|CA4_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 3.1e-54 Identity = 109/229 (47.60%), Postives = 138/229 (60.26%), Query Frame = 0
BLAST of MELO3C015536.2 vs. TrEMBL
Match: tr|A0A1S3BQD6|A0A1S3BQD6_CUCME (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492384 PE=3 SV=1) HSP 1 Score: 564.3 bits (1453), Expect = 1.4e-157 Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
BLAST of MELO3C015536.2 vs. TrEMBL
Match: tr|A0A0A0LX05|A0A0A0LX05_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G597160 PE=3 SV=1) HSP 1 Score: 551.6 bits (1420), Expect = 9.7e-154 Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 0
BLAST of MELO3C015536.2 vs. TrEMBL
Match: tr|A0A2N9I4K7|A0A2N9I4K7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47504 PE=4 SV=1) HSP 1 Score: 444.5 bits (1142), Expect = 1.7e-121 Identity = 210/258 (81.40%), Postives = 224/258 (86.82%), Query Frame = 0
BLAST of MELO3C015536.2 vs. TrEMBL
Match: tr|A0A0F7GZY6|A0A0F7GZY6_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Monsonia emarginata OX=28966 GN=LHCA6 PE=2 SV=1) HSP 1 Score: 444.1 bits (1141), Expect = 2.2e-121 Identity = 206/265 (77.74%), Postives = 226/265 (85.28%), Query Frame = 0
BLAST of MELO3C015536.2 vs. TrEMBL
Match: tr|A0A0K9RHL0|A0A0K9RHL0_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_065920 PE=3 SV=1) HSP 1 Score: 441.4 bits (1134), Expect = 1.4e-120 Identity = 204/265 (76.98%), Postives = 229/265 (86.42%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |