Cucsa.141900 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.141900
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Locationscaffold01079 : 238884 .. 240709 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGGTCAACCCTATTTCACATTTTTTTCATTGGTTTCTCCCAATTTCTCATTCTCCTTTCTTCTATTTGAATACAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGGTTAATTAATTTATAGCTTATTTCATTCGTTTTTTTTTCTTCTTCTTTGATTCGTAGAATTGGAGATTTATAGCTTAAACAGTGGGTTGGCCTCTGAACTTTAGCAACAGCAACAATTTAGTACATAAATTAACACTTTTAAATTTGGTGTTCAACAATTTTTTTGTCTTTCATTTTTCAAACTTGTAATGATTTAGTTCGATTGTGGAAAAGTTCTATCAAAATTTATTATTCTTCTAAGCTCTTCAACTTTCAATTTTGTTGTATTAGATTAGTTTACGAACTTTAGTAGATGTGCTTTTAATTTTATTACAATTTAATCTTAAAACTTTGCATTTTACAAAACTATAGAGTCTCCATTATCGAAATATTATACAGTCAAGTTTAGCAATTAAATTGTTACAAAAATGAAAGTTCAAAAACTAAATCATTACAAAAGTTTGGAAAAAGTTTATAAACATTCTTCTCCACCTACTAAAAGTGATTATTTAACGTTTGTTTGTTCCTTCGTAGCCTTCCCGGCGATTTTGGCTTCGATCCGCTTGGATTGGGTATGCTACTGTCCCTTTTTTTGTTTGATTCAAATTTACATTTTGAAAAGTAATTGGTCGTGAGAAAACTAACTTAACAACAAAGAAGATTTGGGCTATTACTATTACTATTTCTTCTTATTTTTTCTCTTTCTGATAAAAGAAATTAAGAAAGGTGTGTTTTACGATTACAATACTATTTTTGGTTTTCACCTCGGAATAGAAACGTTCTTTTTGAGATTATTAGGCAGGAAATATGGTAGTAGGAGTGGGAATGAAAAGTTAGGAGTTTGTTGGAGAATTAAAAACAATTATTACCAAACACAATTGGAATTAGAATTGTCAATCAAACACATTTTTGTAGTGAATATGAAAATACAGACATCAAAGTGATAATTTGAAATGGGCATGTCAGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGCTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGTACCATTATCATTCCTACCTATTATTTTTTTTATCTTCATTGCTATATTTGAAGTAAATAAATAA

mRNA sequence

ATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTCGATCCGCTTGGATTGGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGCTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGTACCATTATCATTCCTACCTATTATTTTTTTTATCTTCATTGCTATATTTGAAGTAAATAAATAA

Coding sequence (CDS)

ATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTCGATCCGCTTGGATTGGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGCTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGTACCATTATCATTCCTACCTATTATTTTTTTTATCTTCATTGCTATATTTGAAGTAAATAAATAA

Protein sequence

MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSVPLSFLPIIFFIFIAIFEVNK*
Homology
[Close]
BLAST of Cucsa.141900 vs. Swiss-Prot
Match: LHCA6_ARATH (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.8e-106
Identity = 177/227 (77.97%), Postives = 194/227 (85.46%), Query Frame = 1 

Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L R+   +  A   VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDP+
Sbjct: 39  RLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPD 98

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
           TLKWFAQAEL+H+RWAMLAV GI++PE  E LG I+NFSWYDAGSREYFAD TTL VAQ+
Sbjct: 99  TLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQM 158

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            LMGW EGRRWADL+ PGSVD++ K PHK   K DVGYPGG WFD MMWGRGSPEPVMVL
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFS 261
           RTKEIKNGRLAMLAF+G  FQA YT Q P+ENL AH+ADPGHCN+FS
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]
BLAST of Cucsa.141900 vs. Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-83
Identity = 137/203 (67.49%), Postives = 160/203 (78.82%), Query Frame = 1 

Query: 58  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 117
           PDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE+LKW AQAEL+H+RWAML  AGI 
Sbjct: 63  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIF 122

Query: 118 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PG V+ D 
Sbjct: 123 IPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDP 182

Query: 178 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 237
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 183 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIY 242

Query: 238 TGQGPLENLAAHVADPGHCNIFS 261
           TG GP++NL AH+ADPGH  IF+
Sbjct: 243 TGTGPIDNLFAHLADPGHATIFA 265

[Close]
BLAST of Cucsa.141900 vs. Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.6e-83
Identity = 147/266 (55.26%), Postives = 179/266 (67.29%), Query Frame = 1 

Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGN-----FPNHKLR-RDYSDLKAAKSGVSSVCE 60
           MA + +S+  A  +F    S    +  G          +LR   YS    A+S  ++VC 
Sbjct: 1   MASACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSA-TTVCV 60

Query: 61  PLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVA 120
              PDRPLWFPGS+PP WLDGSLPGDFGFDPLGL SDPE+L+W  QAEL+H RWAML  A
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 120

Query: 121 GILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVD 180
           GI +PE    +G++   SWY AG +EYF D TTL + +L L+GW EGRRWAD++ PG V+
Sbjct: 121 GIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVN 180

Query: 181 VDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQ 240
            D   P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 241 AIYTGQGPLENLAAHVADPGHCNIFS 261
            IYTG GP++NL AH+ADPGH  IF+
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFA 265

[Close]
BLAST of Cucsa.141900 vs. Swiss-Prot
Match: LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 3.7e-82
Identity = 133/203 (65.52%), Postives = 158/203 (77.83%), Query Frame = 1 

Query: 58  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 117
           PDRP+WFPGS+PPEWLDGSLPGDFGFDPLGL SDP++LKW  QAE++H RWAML  AGI 
Sbjct: 50  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109

Query: 118 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PGSV+ D 
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169

Query: 178 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 237
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229

Query: 238 TGQGPLENLAAHVADPGHCNIFS 261
           TG GP++NL AH+ADPGH  IF+
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFA 252

[Close]
BLAST of Cucsa.141900 vs. Swiss-Prot
Match: CA4_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.6e-51
Identity = 108/225 (48.00%), Postives = 137/225 (60.89%), Query Frame = 1 

Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L RD S      S  +S  + +   +  W PG + P++L GSL GD GFDPLGL  DPE
Sbjct: 29  RLNRDLSFTSIGSSAKTSSFK-VEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPE 88

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
            LKWF QAEL++ RWAML VAG+LLPE F  +G+I    WYDAG  +YFA  +TL V + 
Sbjct: 89  NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF 148

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            L  +VE RRW D+ NPGSV+ D         K +VGYPGG  F+P+ +      P    
Sbjct: 149 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEA 208

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNI 259
           + KE+ NGRLAMLAF+G   Q   TG+GP ENL  H++DP H  I
Sbjct: 209 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246

[Close]
BLAST of Cucsa.141900 vs. TrEMBL
Match: A0A0A0LX05_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_1G597160 PE=3 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 9.5e-154
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1 

Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFS 261
           GPLENLAAHVADPGHCNIFS
Sbjct: 241 GPLENLAAHVADPGHCNIFS 260

[Close]
BLAST of Cucsa.141900 vs. TrEMBL
Match: A0A0J8BTP1_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g190730 PE=3 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 3.8e-118
Identity = 201/260 (77.31%), Postives = 224/260 (86.15%), Query Frame = 1 

Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MAL+++STA + S+ PIR+   +  +P       +  + S + AAK GVSSVCEPLPPDR
Sbjct: 1   MALAVASTALS-SNLPIREIPGKLLYPSQMKKCNMIGNSSKVNAAKGGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGS+PP+WLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMH+RWAMLAVAGIL+PE
Sbjct: 61  PLWFPGSTPPQWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHSRWAMLAVAGILIPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           W ES+GLI+NF WYDAGSREYFADPTTL V QLALMGW+EGRRWAD VNPG VD++ KLP
Sbjct: 121 WLESIGLIENFDWYDAGSREYFADPTTLFVVQLALMGWIEGRRWADYVNPGCVDIEPKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKK  K DVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGL FQA+YTG+
Sbjct: 181 HKKNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLCFQALYTGE 240

Query: 241 GPLENLAAHVADPGHCNIFS 261
           GPLENL  H+ADPGH NIFS
Sbjct: 241 GPLENLTKHIADPGHYNIFS 259

[Close]
BLAST of Cucsa.141900 vs. TrEMBL
Match: A0A0F7CZB9_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Monsonia marlothii GN=LHCA6 PE=2 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.1e-117
Identity = 203/262 (77.48%), Postives = 224/262 (85.50%), Query Frame = 1 

Query: 3   LSISSTATALSSFPIRDSYHRSNFPGNFPNH----KLRRDYSDLKAAKSGVSSVCEPLPP 62
           +++ S +TALSS  +R+   R    GN        ++R   + L A K GVSSVCEPLPP
Sbjct: 1   MALPSASTALSSITLRE-IPRKLLTGNCRPTTSVVQVRPSRTRLNAGK-GVSSVCEPLPP 60

Query: 63  DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILL 122
           DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAV GIL+
Sbjct: 61  DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVTGILV 120

Query: 123 PEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLK 182
           PEWFE LG+I+N+SWYDAGSREYFADPTTL V QLALMGWVEGRRWAD++NPG VD++LK
Sbjct: 121 PEWFEGLGIIENYSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADMLNPGCVDIELK 180

Query: 183 LPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 242
           LPHKK  K DVGYPGGFWFDPM WGRG+PEPVMVLRTKEIKNGRLAMLAFVG WFQAIYT
Sbjct: 181 LPHKKNPKMDVGYPGGFWFDPMFWGRGTPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYT 240

Query: 243 GQGPLENLAAHVADPGHCNIFS 261
           G+GP+ENL AH+ADPGHCNIFS
Sbjct: 241 GEGPIENLMAHIADPGHCNIFS 260

[Close]
BLAST of Cucsa.141900 vs. TrEMBL
Match: A0A0F7H1K9_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Hypseocharis bilobata GN=LHCA6 PE=2 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 4.2e-117
Identity = 198/261 (75.86%), Postives = 224/261 (85.82%), Query Frame = 1 

Query: 3   LSISSTATALSSFPIRDSYHRSNFPGNFPN---HKLRRDYSDLKAAKSGVSSVCEPLPPD 62
           +++++++TALSS P+R+   R  FPG       + ++   + L A K G+SSVCEPLPPD
Sbjct: 1   MALATSSTALSSLPVREIPSRKLFPGKPRTTCLNLMQPARTRLNATK-GLSSVCEPLPPD 60

Query: 63  RPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLP 122
           RPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMH+RWAMLAVAGIL+P
Sbjct: 61  RPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIP 120

Query: 123 EWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKL 182
           EW E LG I+NFSWYDAGSREYFAD TTL V QL LMGW EGRRWAD++NPG VD++LK+
Sbjct: 121 EWLEGLGFIENFSWYDAGSREYFADHTTLFVVQLILMGWAEGRRWADIINPGCVDMELKV 180

Query: 183 PHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTG 242
           PHKK  K DVGYPGGFWFDP+ WGRGSPEPVMVLRTKEIKNGRLAMLAFVG WFQAIYTG
Sbjct: 181 PHKKNPKMDVGYPGGFWFDPLFWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTG 240

Query: 243 QGPLENLAAHVADPGHCNIFS 261
           +GP+ENL AH+ADPGHCNIFS
Sbjct: 241 EGPIENLMAHIADPGHCNIFS 260

[Close]
BLAST of Cucsa.141900 vs. TrEMBL
Match: A0A061GM67_THECC (Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_037497 PE=3 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 9.3e-117
Identity = 206/266 (77.44%), Postives = 226/266 (84.96%), Query Frame = 1 

Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MAL+I+STA  LSS PIRD   +  FPG           + L+A K GVSSVCEPLPPDR
Sbjct: 1   MALAIASTA--LSSLPIRDRPQKP-FPGKITT--FLPGSTHLRATK-GVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL+PE
Sbjct: 61  PLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILIPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
             E LG I+NFSWYDAG+REYFADPTTL V Q+ALMGWVEGRRW D++NPGSVD+ LK+P
Sbjct: 121 CLERLGFIENFSWYDAGAREYFADPTTLFVVQMALMGWVEGRRWVDMINPGSVDIQLKIP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           +KK    DVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGR+AMLAFVG  FQAIYTG+
Sbjct: 181 NKKNPTPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRIAMLAFVGFCFQAIYTGE 240

Query: 241 GPLENLAAHVADPGHCNIFSVPLSFL 267
           GP+ENL AH+ADPGHCN+FSV L FL
Sbjct: 241 GPIENLMAHIADPGHCNVFSVLLFFL 260

[Close]
BLAST of Cucsa.141900 vs. TAIR10
Match: AT1G19150.1 (AT1G19150.1 photosystem I light harvesting complex gene 6)

HSP 1 Score: 386.3 bits (991), Expect = 1.6e-107
Identity = 177/227 (77.97%), Postives = 194/227 (85.46%), Query Frame = 1 

Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L R+   +  A   VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDP+
Sbjct: 39  RLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPD 98

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
           TLKWFAQAEL+H+RWAMLAV GI++PE  E LG I+NFSWYDAGSREYFAD TTL VAQ+
Sbjct: 99  TLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQM 158

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            LMGW EGRRWADL+ PGSVD++ K PHK   K DVGYPGG WFD MMWGRGSPEPVMVL
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFS 261
           RTKEIKNGRLAMLAF+G  FQA YT Q P+ENL AH+ADPGHCN+FS
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]
BLAST of Cucsa.141900 vs. TAIR10
Match: AT3G61470.1 (AT3G61470.1 photosystem I light harvesting complex gene 2)

HSP 1 Score: 306.2 bits (783), Expect = 2.1e-83
Identity = 133/203 (65.52%), Postives = 158/203 (77.83%), Query Frame = 1 

Query: 58  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 117
           PDRP+WFPGS+PPEWLDGSLPGDFGFDPLGL SDP++LKW  QAE++H RWAML  AGI 
Sbjct: 50  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109

Query: 118 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PGSV+ D 
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169

Query: 178 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 237
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229

Query: 238 TGQGPLENLAAHVADPGHCNIFS 261
           TG GP++NL AH+ADPGH  IF+
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFA 252

[Close]
BLAST of Cucsa.141900 vs. TAIR10
Match: AT3G47470.1 (AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-52
Identity = 108/225 (48.00%), Postives = 137/225 (60.89%), Query Frame = 1 

Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L RD S      S  +S  + +   +  W PG + P++L GSL GD GFDPLGL  DPE
Sbjct: 29  RLNRDLSFTSIGSSAKTSSFK-VEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPE 88

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
            LKWF QAEL++ RWAML VAG+LLPE F  +G+I    WYDAG  +YFA  +TL V + 
Sbjct: 89  NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF 148

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            L  +VE RRW D+ NPGSV+ D         K +VGYPGG  F+P+ +      P    
Sbjct: 149 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEA 208

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNI 259
           + KE+ NGRLAMLAF+G   Q   TG+GP ENL  H++DP H  I
Sbjct: 209 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246

[Close]
BLAST of Cucsa.141900 vs. TAIR10
Match: AT1G45474.1 (AT1G45474.1 photosystem I light harvesting complex gene 5)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-45
Identity = 101/246 (41.06%), Postives = 146/246 (59.35%), Query Frame = 1 

Query: 23  RSNFPGNFPNHK------LRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGS 82
           R    G F +H+      + R  S +KAA  G++     +  +R  W PG +PP +LDG+
Sbjct: 6   RGGITGGFLHHRRDASSVITRRISSVKAAGGGINPT---VAVERATWLPGLNPPPYLDGN 65

Query: 83  LPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDA 142
           L GD+GFDPLGLG DPE+LKW+ QAEL+H+R+AML VAGIL  +   + G+     WY+A
Sbjct: 66  LAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEA 125

Query: 143 GSREY-FADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAK---ADVGYP 202
           G+ ++ FA   TL+V Q  LMG+ E +R+ D V+PGS   +       +A     + GYP
Sbjct: 126 GAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYP 185

Query: 203 GGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVAD 259
           GG   +P+   +   +     + KEIKNGRLAM+A +G + QA  T  GP++NL  H+++
Sbjct: 186 GGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSN 245

[Close]
BLAST of Cucsa.141900 vs. TAIR10
Match: AT1G61520.1 (AT1G61520.1 photosystem I light harvesting complex gene 3)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-39
Identity = 94/219 (42.92%), Postives = 129/219 (58.90%), Query Frame = 1 

Query: 59  DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETL------KWFAQAELMHARWAMLA 118
           +RPLWF  S    +LDGSLPGD+GFDPLGL SDPE        +W A  E+++ R+AML 
Sbjct: 52  NRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLG 111

Query: 119 VAGILLPEWFESLGLIQN---FSWYD------AGSREYFADPTTLLVAQLALMGWVEGRR 178
            AG + PE     GLI       W+       AG+  Y+AD  TL V ++ALMG+ E RR
Sbjct: 112 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRR 171

Query: 179 WADLVNPGSVDVDLKLPHKK--KAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNG 238
             D  NPGS+     L  +K      +  YPGG +F+P+ +G+   + +  L+ KE+KNG
Sbjct: 172 LQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDE-KSLKELKLKEVKNG 231

Query: 239 RLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFS 261
           RLAMLA +G + Q + TG GP +NL  H+ADP + N+ +
Sbjct: 232 RLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLT 268

[Close]
BLAST of Cucsa.141900 vs. NCBI nr
Match: gi|449452592|ref|XP_004144043.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 550.8 bits (1418), Expect = 1.4e-153
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 1 

Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFS 261
           GPLENLAAHVADPGHCNIFS
Sbjct: 241 GPLENLAAHVADPGHCNIFS 260

[Close]
BLAST of Cucsa.141900 vs. NCBI nr
Match: gi|659100141|ref|XP_008450947.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Cucumis melo])

HSP 1 Score: 534.6 bits (1376), Expect = 1.0e-148
Identity = 254/260 (97.69%), Postives = 256/260 (98.46%), Query Frame = 1 

Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISSTA  LSSFPIR+S HR+NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISSTA--LSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFS 261
           GPLENLAAHVADPGHCNIFS
Sbjct: 241 GPLENLAAHVADPGHCNIFS 258

[Close]
BLAST of Cucsa.141900 vs. NCBI nr
Match: gi|731352432|ref|XP_010687546.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 432.6 bits (1111), Expect = 5.4e-118
Identity = 201/260 (77.31%), Postives = 224/260 (86.15%), Query Frame = 1 

Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MAL+++STA + S+ PIR+   +  +P       +  + S + AAK GVSSVCEPLPPDR
Sbjct: 1   MALAVASTALS-SNLPIREIPGKLLYPSQMKKCNMIGNSSKVNAAKGGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGS+PP+WLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMH+RWAMLAVAGIL+PE
Sbjct: 61  PLWFPGSTPPQWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHSRWAMLAVAGILIPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           W ES+GLI+NF WYDAGSREYFADPTTL V QLALMGW+EGRRWAD VNPG VD++ KLP
Sbjct: 121 WLESIGLIENFDWYDAGSREYFADPTTLFVVQLALMGWIEGRRWADYVNPGCVDIEPKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKK  K DVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGL FQA+YTG+
Sbjct: 181 HKKNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLCFQALYTGE 240

Query: 241 GPLENLAAHVADPGHCNIFS 261
           GPLENL  H+ADPGH NIFS
Sbjct: 241 GPLENLTKHIADPGHYNIFS 259

[Close]
BLAST of Cucsa.141900 vs. NCBI nr
Match: gi|590575126|ref|XP_007012598.1| (Photosystem I light harvesting complex gene 6 isoform 2 [Theobroma cacao])

HSP 1 Score: 427.9 bits (1099), Expect = 1.3e-116
Identity = 206/266 (77.44%), Postives = 226/266 (84.96%), Query Frame = 1 

Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MAL+I+STA  LSS PIRD   +  FPG           + L+A K GVSSVCEPLPPDR
Sbjct: 1   MALAIASTA--LSSLPIRDRPQKP-FPGKITT--FLPGSTHLRATK-GVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL+PE
Sbjct: 61  PLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILIPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
             E LG I+NFSWYDAG+REYFADPTTL V Q+ALMGWVEGRRW D++NPGSVD+ LK+P
Sbjct: 121 CLERLGFIENFSWYDAGAREYFADPTTLFVVQMALMGWVEGRRWVDMINPGSVDIQLKIP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           +KK    DVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGR+AMLAFVG  FQAIYTG+
Sbjct: 181 NKKNPTPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRIAMLAFVGFCFQAIYTGE 240

Query: 241 GPLENLAAHVADPGHCNIFSVPLSFL 267
           GP+ENL AH+ADPGHCN+FSV L FL
Sbjct: 241 GPIENLMAHIADPGHCNVFSVLLFFL 260

[Close]
BLAST of Cucsa.141900 vs. NCBI nr
Match: gi|902221662|gb|KNA18964.1| (hypothetical protein SOVF_065920 isoform A [Spinacia oleracea])

HSP 1 Score: 426.4 bits (1095), Expect = 3.9e-116
Identity = 202/265 (76.23%), Postives = 227/265 (85.66%), Query Frame = 1 

Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRR----DYSDLKAAKSGVSSVCEPL 60
           MAL++SSTA  LS+ PIR+       PG     +L++      S + A K G+SSVCEPL
Sbjct: 1   MALAVSSTA--LSNLPIRE------IPGKLYPSQLKKCMVGSNSKVSAGKGGISSVCEPL 60

Query: 61  PPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGI 120
           PPDRPLWFPGS+PP+WLDGSLPGDFGFDPLGLGSDPETL+WFAQAELMH+RWAMLAVAGI
Sbjct: 61  PPDRPLWFPGSTPPQWLDGSLPGDFGFDPLGLGSDPETLRWFAQAELMHSRWAMLAVAGI 120

Query: 121 LLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVD 180
           L+PEW ES+GL++NF+WYDAGSREYFADPTTL V QLALMGWVEGRRWAD VNPG VD++
Sbjct: 121 LIPEWLESIGLMENFNWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADYVNPGCVDIE 180

Query: 181 LKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI 240
            KLP++K  K DVGYPGG WFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGL FQA+
Sbjct: 181 PKLPNRKNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLCFQAV 240

Query: 241 YTGQGPLENLAAHVADPGHCNIFSV 262
           YTG+GPLENL+ HVADPGHCNIFSV
Sbjct: 241 YTGEGPLENLSRHVADPGHCNIFSV 257

The following BLAST results are available for this feature:
BLAST of Cucsa.141900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LHCA6_ARATH2.8e-10677.97Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th... [more]
CB12_PETHY1.1e-8367.49Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1[more]
CB12_SOLLC5.6e-8355.26Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7... [more]
LHCA2_ARATH3.7e-8265.52Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th... [more]
CA4_ARATH2.6e-5148.00Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA... [more]
BLAST of Cucsa.141900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX05_CUCSA9.5e-154100.00Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_1G59716... [more]
A0A0J8BTP1_BETVU3.8e-11877.31Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris ... [more]
A0A0F7CZB9_9ROSI1.1e-11777.48Chlorophyll a-b binding protein, chloroplastic OS=Monsonia marlothii GN=LHCA6 PE... [more]
A0A0F7H1K9_9ROSI4.2e-11775.86Chlorophyll a-b binding protein, chloroplastic OS=Hypseocharis bilobata GN=LHCA6... [more]
A0A061GM67_THECC9.3e-11777.44Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_037497 ... [more]
BLAST of Cucsa.141900 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G19150.11.6e-10777.97 photosystem I light harvesting complex gene 6[more]
AT3G61470.12.1e-8365.52 photosystem I light harvesting complex gene 2[more]
AT3G47470.11.4e-5248.00 light-harvesting chlorophyll-protein complex I subunit A4[more]
AT1G45474.11.7e-4541.06 photosystem I light harvesting complex gene 5[more]
AT1G61520.11.1e-3942.92 photosystem I light harvesting complex gene 3[more]
BLAST of Cucsa.141900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449452592|ref|XP_004144043.1|1.4e-153100.00PREDICTED: chlorophyll a-b binding protein, chloroplastic [Cucumis sativus][more]
gi|659100141|ref|XP_008450947.1|1.0e-14897.69PREDICTED: chlorophyll a-b binding protein, chloroplastic [Cucumis melo][more]
gi|731352432|ref|XP_010687546.1|5.4e-11877.31PREDICTED: chlorophyll a-b binding protein, chloroplastic [Beta vulgaris subsp. ... [more]
gi|590575126|ref|XP_007012598.1|1.3e-11677.44Photosystem I light harvesting complex gene 6 isoform 2 [Theobroma cacao][more]
gi|902221662|gb|KNA18964.1|3.9e-11676.23hypothetical protein SOVF_065920 isoform A [Spinacia oleracea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.141900.1Cucsa.141900.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..272
score: 3.4E
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 69..235
score: 2.9
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 60..260
score: 3.4
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 59..265
score: 1.44
NoneNo IPR availablePANTHERPTHR21649:SF5SUBFAMILY NOT NAMEDcoord: 1..272
score: 3.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.141900Cla011145Watermelon (97103) v1cgywmB251
Cucsa.141900Csa1G597160Cucumber (Chinese Long) v2cgycuB205
Cucsa.141900MELO3C015536Melon (DHL92) v3.5.1cgymeB238
Cucsa.141900ClCG03G014920Watermelon (Charleston Gray)cgywcgB242
Cucsa.141900CSPI01G28860Wild cucumber (PI 183967)cgycpiB208
Cucsa.141900Cp4.1LG04g11230Cucurbita pepo (Zucchini)cgycpeB0385
Cucsa.141900MELO3C015536.2Melon (DHL92) v3.6.1cgymedB235
Cucsa.141900CsaV3_1G041230Cucumber (Chinese Long) v3cgycucB213
Cucsa.141900Cla97C03G065150Watermelon (97103) v2cgywmbB241
Cucsa.141900Bhi02G001494Wax gourdcgywgoB282
Cucsa.141900Carg27601Silver-seed gourdcarcgyB0722
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.141900Silver-seed gourdcarcgyB0112
Cucsa.141900Cucumber (Chinese Long) v3cgycucB215
Cucsa.141900Cucumber (Gy14) v1cgycgyB091
Cucsa.141900Cucurbita maxima (Rimu)cgycmaB0394
Cucsa.141900Cucurbita maxima (Rimu)cgycmaB0396
Cucsa.141900Cucurbita moschata (Rifu)cgycmoB0393
Cucsa.141900Cucurbita moschata (Rifu)cgycmoB0396
Cucsa.141900Wild cucumber (PI 183967)cgycpiB210
Cucsa.141900Cucumber (Chinese Long) v2cgycuB207
Cucsa.141900Melon (DHL92) v3.5.1cgymeB236
Cucsa.141900Watermelon (Charleston Gray)cgywcgB240
Cucsa.141900Watermelon (97103) v1cgywmB250
Cucsa.141900Watermelon (97103) v1cgywmB252
Cucsa.141900Cucurbita pepo (Zucchini)cgycpeB0383
Cucsa.141900Bottle gourd (USVL1VR-Ls)cgylsiB230