CsGy1G028080 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G028080
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr1 : 26308356 .. 26310723 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTATATCCACAAGCATCCATCACAGGCCATCCATTCCCCCAAATATACATTCTATAACCCCACCAATCCTCTTTTACCCTTTTGGAGTCTCTCCGGCGCCCATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGGTCAACCCTATTTCACATTTTTTTCATTGGTTTCTCCCAATTTCTCATTCTCCTTTCTTCTATTTGAATACAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGGTTAATTAATTTATAGCTTATTTCATTCGTTTTTTTTTCTTCTTCTTTGATTCGTAGAATTGGAGATTTATAGCTTAAACAGTGGGTTGGCCTCTGAACTTTAGCAACAGCAACAATTTAGTACATAAATTAACACTTTTAAATTTGGTGTTCAACAATTTTTTTGTCTTTCATTTTTCAAACTTGTAATGATTTAGTTCGATTGTGGAAAAGTTCTATCAAAATTTATTATTCTTCTAAGCTCTTCAACTTTCAATTTTGTTGTATTAGATTAGTTTACGAACTTTAGTAGATGTGCTTTTAATTTTATTACAATTTAATCTTAAAACTTTGCATTTTACAAAACTATAGAGTCTCCATTATCGAAATATTATACAGTCAAGTTTAGCAATTAAATTGTTACAAAAATGAAAGTTCAAAAACTAAATCATTACAAAAGTTTGGAAAAAGTTTATAAACATTCTTCTCCACCTACTAAAAGTGATTATTTAACGTTTGTTTGTTCCTTCGTAGCCTTCCCGGCGATTTTGGCTTCGATCCGCTTGGATTGGGTATGCTACTGTCCCTTTTTTTGTTTGATTCAAATTTACATTTTGAAAAGTAATTGGTCGTGAGAAAACTAACTTAACAACAAAGAAGATTTGGGCTATTACTATTACTATTTCTTCTTATTTTTTCTCTTTCTGATAAAAGAAATTAAGAAAGGTGTGTTTTACGATTACAATACTATTTTTGGTTTTCACCTCGGAATAGAAACGTTCTTTTTGAGATTATTAGGCAGGAAATATGGTAGTAGGAGTGGGAATGAAAAGTTAGGAGTTTGTTGGAGAATTAAAAACAATTATTACCAAACACAATTGGAATTAGAATTGTCAATCAAACACATTTTTGTAGTGAATATGAAAATACAGACATCAAAGTGATAATTTGAAATGGGCATGTCAGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGCTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGTACCATTATCATTCCTACCTATTATTTTTTTTATCTTCATTGCTATATTTGAAGTAAATAAATAAATACTATGATAAAAAAGAGCACAAATCGTACACTTTTAAAAATTCATAACCAAAAAATAAAATTGTTGTCCAATGGGTCAATCTATTATTTAGTCCATTCGCAAATTGATCTCTTAAATAAGTTTTTAATTTTGTGTTCGATAAAGGTTCATGGGTGGAATATATTATTTTCGTGTTAATTTACTTTTATTTTTTGTTTGCAGGCATTTAGTTCTGGTTCGGGTTGAAATTGAATCCTTCATTTTGGTTTAGTTGAGATGGTGAAGTGTGTACATAAAAAGCAGAGAGATGAGAAGATTTGGGATGGTTTACTATATAATTGTCTACGTATTATTCAAACTCTTTGATGCTTGACTCCTCCTCACTAGTTAATATTAATTTCAAAATTATCTTAATTTATTGAATCTTAAAAATTATTTTGAAATCAGATTGAACCAAA

mRNA sequence

CTGTATATCCACAAGCATCCATCACAGGCCATCCATTCCCCCAAATATACATTCTATAACCCCACCAATCCTCTTTTACCCTTTTGGAGTCTCTCCGGCGCCCATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTCGATCCGCTTGGATTGGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGCTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGCATTTAGTTCTGGTTCGGGTTGAAATTGAATCCTTCATTTTGGTTTAGTTGAGATGGTGAAGTGTGTACATAAAAAGCAGAGAGATGAGAAGATTTGGGATGGTTTACTATATAATTGTCTACGTATTATTCAAACTCTTTGATGCTTGACTCCTCCTCACTAGTTAATATTAATTTCAAAATTATCTTAATTTATTGAATCTTAAAAATTATTTTGAAATCAGATTGAACCAAA

Coding sequence (CDS)

ATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTCGATCCGCTTGGATTGGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGCTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGCATTTAGTTCTGGTTCGGGTTGA

Protein sequence

MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG

Homology

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BLAST of CsGy1G028080 vs. NCBI nr
Match: XP_004144043.1 (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Cucumis sativus] >KGN66318.1 hypothetical protein Csa_1G597160 [Cucumis sativus])

HSP 1 Score: 568.2 bits (1463), Expect = 1.5e-158
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 268
           GPLENLAAHVADPGHCNIFSAFSSGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 267

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BLAST of CsGy1G028080 vs. NCBI nr
Match: XP_008450947.1 (PREDICTED: photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis melo])

HSP 1 Score: 550.8 bits (1418), Expect = 2.5e-153
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISS  TALSSFPIR+S HR+NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISS--TALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 268
           GPLENLAAHVADPGHCNIFSAF+SGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFTSGSG 265

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BLAST of CsGy1G028080 vs. NCBI nr
Match: XP_022967968.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 504.6 bits (1298), Expect = 2.1e-139
Identity = 241/268 (89.93%), Postives = 246/268 (91.79%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRS---NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLP 60
           MALSISS  TALSS PIR+S H     NFPG FP + LRR  S L AAKSGVSSVCEPLP
Sbjct: 17  MALSISS--TALSSLPIRESSHSHRALNFPGKFPKYNLRRGSSHLNAAKSGVSSVCEPLP 76

Query: 61  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 120
           PDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAVAGIL
Sbjct: 77  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGIL 136

Query: 121 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 180
           LPEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRRWAD+VNPG VDVDL
Sbjct: 137 LPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGCVDVDL 196

Query: 181 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 240
           KLPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY
Sbjct: 197 KLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 256

Query: 241 TGQGPLENLAAHVADPGHCNIFSAFSSG 266
           TGQGPLENLAAHVADPGHCNIFSAFSSG
Sbjct: 257 TGQGPLENLAAHVADPGHCNIFSAFSSG 282

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BLAST of CsGy1G028080 vs. NCBI nr
Match: XP_022929243.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 504.2 bits (1297), Expect = 2.7e-139
Identity = 241/269 (89.59%), Postives = 250/269 (92.94%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRD---SYHRS-NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPL 60
           MALSISS  TALS+ PIR+   S+HR+ NFPG FP + LRR  + L AAKSGVSSVCEPL
Sbjct: 1   MALSISS--TALSTLPIRESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPL 60

Query: 61  PPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGI 120
           PPDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAVAGI
Sbjct: 61  PPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGI 120

Query: 121 LLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVD 180
           LLPEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRRWAD+VNPGSVDVD
Sbjct: 121 LLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVD 180

Query: 181 LKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI 240
           LKLPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI
Sbjct: 181 LKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI 240

Query: 241 YTGQGPLENLAAHVADPGHCNIFSAFSSG 266
           YTGQGPLENLAAHVADPGHCNIFSAFSSG
Sbjct: 241 YTGQGPLENLAAHVADPGHCNIFSAFSSG 267

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BLAST of CsGy1G028080 vs. NCBI nr
Match: XP_022147671.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Momordica charantia])

HSP 1 Score: 503.8 bits (1296), Expect = 3.5e-139
Identity = 237/265 (89.43%), Postives = 247/265 (93.21%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSI+STA ++S+ PIR+S H  +FPG F  H LRRDYS L AAKSGVSSVCEPLPPDR
Sbjct: 1   MALSIASTALSVSTLPIRES-HTRHFPGKFTKH-LRRDYSHLNAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLI+NFSWYDAG+REYFADPTTLLVAQL LMGW EGRRWAD+VNPGSVDVDLKLP
Sbjct: 121 WFESLGLIENFSWYDAGTREYFADPTTLLVAQLGLMGWAEGRRWADMVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKPAPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFSSG 266
           GPLENLAAH+ADPGHCNIFSAF SG
Sbjct: 241 GPLENLAAHLADPGHCNIFSAFRSG 263

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BLAST of CsGy1G028080 vs. TAIR10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6)

HSP 1 Score: 399.8 bits (1026), Expect = 1.3e-111
Identity = 180/231 (77.92%), Postives = 198/231 (85.71%), Query Frame = 0


Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L R+   +  A   VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDP+
Sbjct: 39  RLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPD 98

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
           TLKWFAQAEL+H+RWAMLAV GI++PE  E LG I+NFSWYDAGSREYFAD TTL VAQ+
Sbjct: 99  TLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQM 158

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            LMGW EGRRWADL+ PGSVD++ K PHK   K DVGYPGG WFD MMWGRGSPEPVMVL
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSS 265
           RTKEIKNGRLAMLAF+G  FQA YT Q P+ENL AH+ADPGHCN+FSAF+S
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269

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BLAST of CsGy1G028080 vs. TAIR10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 317.4 bits (812), Expect = 8.5e-87
Identity = 135/206 (65.53%), Postives = 161/206 (78.16%), Query Frame = 0


Query: 58  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 117
           PDRP+WFPGS+PPEWLDGSLPGDFGFDPLGL SDP++LKW  QAE++H RWAML  AGI 
Sbjct: 50  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109

Query: 118 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PGSV+ D 
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169

Query: 178 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 237
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229

Query: 238 TGQGPLENLAAHVADPGHCNIFSAFS 264
           TG GP++NL AH+ADPGH  IF+AF+
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFAAFT 255

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BLAST of CsGy1G028080 vs. TAIR10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-55
Identity = 109/230 (47.39%), Postives = 139/230 (60.43%), Query Frame = 0


Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L RD S      S  +S  + +   +  W PG + P++L GSL GD GFDPLGL  DPE
Sbjct: 29  RLNRDLSFTSIGSSAKTSSFK-VEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPE 88

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
            LKWF QAEL++ RWAML VAG+LLPE F  +G+I    WYDAG  +YFA  +TL V + 
Sbjct: 89  NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF 148

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            L  +VE RRW D+ NPGSV+ D         K +VGYPGG  F+P+ +      P    
Sbjct: 149 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEA 208

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 264
           + KE+ NGRLAMLAF+G   Q   TG+GP ENL  H++DP H  I   F+
Sbjct: 209 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251

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BLAST of CsGy1G028080 vs. TAIR10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5)

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-47
Identity = 104/255 (40.78%), Postives = 151/255 (59.22%), Query Frame = 0


Query: 23  RSNFPGNFPNHK------LRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGS 82
           R    G F +H+      + R  S +KAA  G++     +  +R  W PG +PP +LDG+
Sbjct: 6   RGGITGGFLHHRRDASSVITRRISSVKAAGGGINPT---VAVERATWLPGLNPPPYLDGN 65

Query: 83  LPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDA 142
           L GD+GFDPLGLG DPE+LKW+ QAEL+H+R+AML VAGIL  +   + G+     WY+A
Sbjct: 66  LAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEA 125

Query: 143 GSREY-FADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAK---ADVGYP 202
           G+ ++ FA   TL+V Q  LMG+ E +R+ D V+PGS   +       +A     + GYP
Sbjct: 126 GAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYP 185

Query: 203 GGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVAD 262
           GG   +P+   +   +     + KEIKNGRLAM+A +G + QA  T  GP++NL  H+++
Sbjct: 186 GGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSN 245

Query: 263 PGHCNIF-SAFSSGS 267
           P H  I  + F+S S
Sbjct: 246 PWHKTIIQTLFTSTS 256

[Close]

BLAST of CsGy1G028080 vs. TAIR10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3)

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-42
Identity = 94/220 (42.73%), Postives = 130/220 (59.09%), Query Frame = 0


Query: 59  DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETL------KWFAQAELMHARWAMLA 118
           +RPLWF  S    +LDGSLPGD+GFDPLGL SDPE        +W A  E+++ R+AML 
Sbjct: 52  NRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLG 111

Query: 119 VAGILLPEWFESLGLI---QNFSWYD------AGSREYFADPTTLLVAQLALMGWVEGRR 178
            AG + PE     GLI       W+       AG+  Y+AD  TL V ++ALMG+ E RR
Sbjct: 112 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRR 171

Query: 179 WADLVNPGSVDVDLKLPHKK--KAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNG 238
             D  NPGS+     L  +K      +  YPGG +F+P+ +G+   + +  L+ KE+KNG
Sbjct: 172 LQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGK-DEKSLKELKLKEVKNG 231

Query: 239 RLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSA 262
           RLAMLA +G + Q + TG GP +NL  H+ADP + N+ ++
Sbjct: 232 RLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTS 269

[Close]

BLAST of CsGy1G028080 vs. Swiss-Prot
Match: sp|Q8LCQ4|LHCA6_ARATH (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 2.3e-110
Identity = 180/231 (77.92%), Postives = 198/231 (85.71%), Query Frame = 0


Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L R+   +  A   VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDP+
Sbjct: 39  RLMRERLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPD 98

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
           TLKWFAQAEL+H+RWAMLAV GI++PE  E LG I+NFSWYDAGSREYFAD TTL VAQ+
Sbjct: 99  TLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQM 158

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            LMGW EGRRWADL+ PGSVD++ K PHK   K DVGYPGG WFD MMWGRGSPEPVMVL
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSS 265
           RTKEIKNGRLAMLAF+G  FQA YT Q P+ENL AH+ADPGHCN+FSAF+S
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]

BLAST of CsGy1G028080 vs. Swiss-Prot
Match: sp|P13869|CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.1e-87
Identity = 140/206 (67.96%), Postives = 163/206 (79.13%), Query Frame = 0


Query: 58  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 117
           PDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE+LKW AQAEL+H+RWAML  AGI 
Sbjct: 63  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIF 122

Query: 118 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PG V+ D 
Sbjct: 123 IPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDP 182

Query: 178 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 237
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 183 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIY 242

Query: 238 TGQGPLENLAAHVADPGHCNIFSAFS 264
           TG GP++NL AH+ADPGH  IF+AFS
Sbjct: 243 TGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of CsGy1G028080 vs. Swiss-Prot
Match: sp|P10708|CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 4.0e-86
Identity = 150/269 (55.76%), Postives = 182/269 (67.66%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGN-----FPNHKLR-RDYSDLKAAKSGVSSVCE 60
           MA + +S+  A  +F    S    +  G          +LR   YS    A+S  ++VC 
Sbjct: 1   MASACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARS-ATTVCV 60

Query: 61  PLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVA 120
              PDRPLWFPGS+PP WLDGSLPGDFGFDPLGL SDPE+L+W  QAEL+H RWAML  A
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 120

Query: 121 GILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVD 180
           GI +PE    +G++   SWY AG +EYF D TTL + +L L+GW EGRRWAD++ PG V+
Sbjct: 121 GIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVN 180

Query: 181 VDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQ 240
            D   P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 241 AIYTGQGPLENLAAHVADPGHCNIFSAFS 264
            IYTG GP++NL AH+ADPGH  IF+AFS
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of CsGy1G028080 vs. Swiss-Prot
Match: sp|Q9SYW8|LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.5e-85
Identity = 135/206 (65.53%), Postives = 161/206 (78.16%), Query Frame = 0


Query: 58  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 117
           PDRP+WFPGS+PPEWLDGSLPGDFGFDPLGL SDP++LKW  QAE++H RWAML  AGI 
Sbjct: 50  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109

Query: 118 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PGSV+ D 
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169

Query: 178 KLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 237
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229

Query: 238 TGQGPLENLAAHVADPGHCNIFSAFS 264
           TG GP++NL AH+ADPGH  IF+AF+
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFAAFT 255

[Close]

BLAST of CsGy1G028080 vs. Swiss-Prot
Match: sp|P27521|CA4_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.4e-54
Identity = 109/230 (47.39%), Postives = 139/230 (60.43%), Query Frame = 0


Query: 34  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 93
           +L RD S      S  +S  + +   +  W PG + P++L GSL GD GFDPLGL  DPE
Sbjct: 29  RLNRDLSFTSIGSSAKTSSFK-VEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPE 88

Query: 94  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 153
            LKWF QAEL++ RWAML VAG+LLPE F  +G+I    WYDAG  +YFA  +TL V + 
Sbjct: 89  NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF 148

Query: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVL 213
            L  +VE RRW D+ NPGSV+ D         K +VGYPGG  F+P+ +      P    
Sbjct: 149 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEA 208

Query: 214 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 264
           + KE+ NGRLAMLAF+G   Q   TG+GP ENL  H++DP H  I   F+
Sbjct: 209 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of CsGy1G028080 vs. TrEMBL
Match: tr|A0A0A0LX05|A0A0A0LX05_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G597160 PE=3 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 1.0e-158
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 268
           GPLENLAAHVADPGHCNIFSAFSSGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 267

[Close]

BLAST of CsGy1G028080 vs. TrEMBL
Match: tr|A0A1S3BQD6|A0A1S3BQD6_CUCME (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492384 PE=3 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 1.7e-153
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISS  TALSSFPIR+S HR+NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISS--TALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 268
           GPLENLAAHVADPGHCNIFSAF+SGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFTSGSG 265

[Close]

BLAST of CsGy1G028080 vs. TrEMBL
Match: tr|A0A2N9I4K7|A0A2N9I4K7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47504 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 9.2e-120
Identity = 209/260 (80.38%), Postives = 224/260 (86.15%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSI+S  TALSS P R+  H+  F GNF      R  S + A K GVSSVCEPLPPDR
Sbjct: 1   MALSIAS--TALSSLPTRE-LHQRFFLGNFTTCLPGRT-SHVNATK-GVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMH RWAMLAVAGIL+PE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHGRWAMLAVAGILIPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           W ES+G I++FSWYDAG+REYFAD TTL V QLALMGWVEGRRWADL+NPGSVD++ K+P
Sbjct: 121 WLESIGYIKDFSWYDAGTREYFADQTTLFVVQLALMGWVEGRRWADLINPGSVDIEPKVP 180

Query: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKK  K DVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVG WFQAIYTG+
Sbjct: 181 HKKNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGE 240

Query: 241 GPLENLAAHVADPGHCNIFS 261
           GPLENL  H+ADPGHCNIFS
Sbjct: 241 GPLENLTCHIADPGHCNIFS 255

[Close]

BLAST of CsGy1G028080 vs. TrEMBL
Match: tr|A0A0F7GZY6|A0A0F7GZY6_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Monsonia emarginata OX=28966 GN=LHCA6 PE=2 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 1.2e-119
Identity = 201/270 (74.44%), Postives = 224/270 (82.96%), Query Frame = 0


Query: 3   LSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKA--------AKSGVSSVCE 62
           +++ S +TALSS  +R+       P      K R   S ++         A  GVSSVCE
Sbjct: 1   MALPSASTALSSITLRE------IPRKLLTGKCRPTASAVQVRPSRTRLNAGKGVSSVCE 60

Query: 63  PLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVA 122
           PLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAV+
Sbjct: 61  PLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVS 120

Query: 123 GILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVD 182
           GIL+PEWFE LG+I+N+SWYDAGSREYFADPTTL V QLALMGW EGRRWAD++NPG VD
Sbjct: 121 GILIPEWFEGLGIIENYSWYDAGSREYFADPTTLFVVQLALMGWAEGRRWADMLNPGCVD 180

Query: 183 VDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQ 242
           ++ KLPHKK  K DVGYPGGFWFDPM WGRG+PEPVMVLRTKEIKNGRLAMLAFVG WFQ
Sbjct: 181 IEFKLPHKKNPKMDVGYPGGFWFDPMFWGRGTPEPVMVLRTKEIKNGRLAMLAFVGFWFQ 240

Query: 243 AIYTGQGPLENLAAHVADPGHCNIFSAFSS 265
           A+YTG+GP+ENL AH+ADPGHCNIFSAF+S
Sbjct: 241 AVYTGEGPIENLRAHIADPGHCNIFSAFTS 264

[Close]

BLAST of CsGy1G028080 vs. TrEMBL
Match: tr|A0A0K9RHL0|A0A0K9RHL0_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_065920 PE=3 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 6.0e-119
Identity = 204/267 (76.40%), Postives = 229/267 (85.77%), Query Frame = 0


Query: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRR----DYSDLKAAKSGVSSVCEPL 60
           MAL++SS  TALS+ PIR+       PG     +L++      S + A K G+SSVCEPL
Sbjct: 1   MALAVSS--TALSNLPIRE------IPGKLYPSQLKKCMVGSNSKVSAGKGGISSVCEPL 60

Query: 61  PPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGI 120
           PPDRPLWFPGS+PP+WLDGSLPGDFGFDPLGLGSDPETL+WFAQAELMH+RWAMLAVAGI
Sbjct: 61  PPDRPLWFPGSTPPQWLDGSLPGDFGFDPLGLGSDPETLRWFAQAELMHSRWAMLAVAGI 120

Query: 121 LLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVD 180
           L+PEW ES+GL++NF+WYDAGSREYFADPTTL V QLALMGWVEGRRWAD VNPG VD++
Sbjct: 121 LIPEWLESIGLMENFNWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADYVNPGCVDIE 180

Query: 181 LKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAI 240
            KLP++K  K DVGYPGG WFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGL FQA+
Sbjct: 181 PKLPNRKNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLCFQAV 240

Query: 241 YTGQGPLENLAAHVADPGHCNIFSAFS 264
           YTG+GPLENL+ HVADPGHCNIFSAFS
Sbjct: 241 YTGEGPLENLSRHVADPGHCNIFSAFS 259

The following BLAST results are available for this feature:

BLAST of CsGy1G028080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144043.1	1.5e-158	100.00	PREDICTED: chlorophyll a-b binding protein, chloroplastic [Cucumis sativus] >KGN...	[more]
XP_008450947.1	2.5e-153	97.38	PREDICTED: photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucum...	[more]
XP_022967968.1	2.1e-139	89.93	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucur...	[more]
XP_022929243.1	2.7e-139	89.59	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucur...	[more]
XP_022147671.1	3.5e-139	89.43	photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Momordica charan...	[more]

BLAST of CsGy1G028080 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19150.1	1.3e-111	77.92	photosystem I light harvesting complex gene 6	[more]
AT3G61470.1	8.5e-87	65.53	photosystem I light harvesting complex gene 2	[more]
AT3G47470.1	1.3e-55	47.39	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G45474.1	1.3e-47	40.78	photosystem I light harvesting complex gene 5	[more]
AT1G61520.1	4.9e-42	42.73	photosystem I light harvesting complex gene 3	[more]

BLAST of CsGy1G028080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LCQ4\|LHCA6_ARATH	2.3e-110	77.92	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
sp\|P13869\|CB12_PETHY	2.1e-87	67.96	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
sp\|P10708\|CB12_SOLLC	4.0e-86	55.76	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
sp\|Q9SYW8\|LHCA2_ARATH	1.5e-85	65.53	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
sp\|P27521\|CA4_ARATH	2.4e-54	47.39	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CsGy1G028080 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LX05\|A0A0A0LX05_CUCSA	1.0e-158	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
tr\|A0A1S3BQD6\|A0A1S3BQD6_CUCME	1.7e-153	97.38	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2N9I4K7\|A0A2N9I4K7_FAGSY	9.2e-120	80.38	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47504 PE=4 SV=1	[more]
tr\|A0A0F7GZY6\|A0A0F7GZY6_9ROSI	1.2e-119	74.44	Chlorophyll a-b binding protein, chloroplastic OS=Monsonia emarginata OX=28966 G...	[more]
tr\|A0A0K9RHL0\|A0A0K9RHL0_SPIOL	6.0e-119	76.40	Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G028080.1	CsGy1G028080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 69..235 e-value: 3.2E-53 score: 180.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	G3DSA:1.10.3460.10		coord: 70..255 e-value: 9.8E-76 score: 255.9
None	No IPR available	PANTHER	PTHR21649:SF5	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC	coord: 1..264
None	No IPR available	SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	coord: 59..262
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..264

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G028080	Cla011145	Watermelon (97103) v1	cgybwmB022
CsGy1G028080	Csa1G597160	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G028080	MELO3C015536	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G028080	ClCG03G014920	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G028080	CSPI01G28860	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G028080	CmaCh11G007460	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G028080	CmoCh11G007560	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G028080	Cp4.1LG04g11230	Cucurbita pepo (Zucchini)	cgybcpeB125
CsGy1G028080	MELO3C015536.2	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G028080	CsaV3_1G041230	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G028080	Cla97C03G065150	Watermelon (97103) v2	cgybwmbB041
CsGy1G028080	Bhi02G001494	Wax gourd	cgybwgoB091

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G028080	Cucurbita maxima (Rimu)	cgybcmaB005
CsGy1G028080	Cucurbita maxima (Rimu)	cgybcmaB143
CsGy1G028080	Cucurbita moschata (Rifu)	cgybcmoB006
CsGy1G028080	Cucurbita moschata (Rifu)	cgybcmoB134
CsGy1G028080	Cucurbita pepo (Zucchini)	cgybcpeB054
CsGy1G028080	Cucumber (Chinese Long) v2	cgybcuB047
CsGy1G028080	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G028080	Melon (DHL92) v3.5.1	cgybmeB036
CsGy1G028080	Watermelon (97103) v1	cgybwmB002
CsGy1G028080	Silver-seed gourd	carcgybB0599
CsGy1G028080	Wild cucumber (PI 183967)	cgybcpiB045
CsGy1G028080	Silver-seed gourd	carcgybB0101
CsGy1G028080	Cucumber (Chinese Long) v3	cgybcucB052