MELO3C029085.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029085.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Defensin-like protein 3
Location	chr01 : 21027305 .. 21027832 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACATTAAAATGAAAGGAAATGAGGTAGTCACAATATATAAAAGGGGTATTGACTCCTAAGCAGGGCATTGGAATTAAAGTACAAGAAACTGAAAGATTAAGAAGAAAAAGACATGGCAGGACGATGGAAAAAACTCACATTTGTGGCATTTGTCTTTCTATCCATTGCTTCTGGTACTCAATCTGATGCCATTATTTCATGTCATTTCCAAAATAAAAATAGAGATTAACAGAATCACGTAGTGTTGTTGTTACTTACAGGATGGATGATGGAGGAGACGGAAGGAAAGATTTGCTTCAAGCAGAGCCCGTCGTTCAAGGGAAAGTGTACTTCAAATGATGAATGTGTTAAAGCTTGCGATATCGACATGTGGTATAATGGAGTTTGCTCGAACGGTTTATGCATTTGTACCGTCATTTGTTGACTTTGTCATGGTCGTGTTATACAATTTTAATCTGGTATAAAATTGACTGAAGTTGTTATCTTCGAAATGAATAAATAAGTTGTTGATCGCCGCTGTTAAACTA

mRNA sequence

AACATTAAAATGAAAGGAAATGAGGTAGTCACAATATATAAAAGGGGTATTGACTCCTAAGCAGGGCATTGGAATTAAAGTACAAGAAACTGAAAGATTAAGAAGAAAAAGACATGGCAGGACGATGGAAAAAACTCACATTTGTGGCATTTGTCTTTCTATCCATTGCTTCTGGATGGATGATGGAGGAGACGGAAGGAAAGATTTGCTTCAAGCAGAGCCCGTCGTTCAAGGGAAAGTGTACTTCAAATGATGAATGTGTTAAAGCTTGCGATATCGACATGTGGTATAATGGAGTTTGCTCGAACGGTTTATGCATTTGTACCGTCATTTGTTGACTTTGTCATGGTCGTGTTATACAATTTTAATCTGGTATAAAATTGACTGAAGTTGTTATCTTCGAAATGAATAAATAAGTTGTTGATCGCCGCTGTTAAACTA

Coding sequence (CDS)

ATGGCAGGACGATGGAAAAAACTCACATTTGTGGCATTTGTCTTTCTATCCATTGCTTCTGGATGGATGATGGAGGAGACGGAAGGAAAGATTTGCTTCAAGCAGAGCCCGTCGTTCAAGGGAAAGTGTACTTCAAATGATGAATGTGTTAAAGCTTGCGATATCGACATGTGGTATAATGGAGTTTGCTCGAACGGTTTATGCATTTGTACCGTCATTTGTTGA

Protein sequence

MAGRWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYNGVCSNGLCICTVIC

Homology

[Close]

BLAST of MELO3C029085.2 vs. NCBI nr
Match: KGN44293.1 (hypothetical protein Csa_7G239060 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-29
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MAGRWKKLTFVAFVF-LSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWY 60
          MAG WKKLTFVAF+F L+IASGWMM ET GKICFKQS SFKGKC SNDECVKACD DMWY
Sbjct: 1  MAGGWKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDMWY 60

Query: 61 NGVCSNGLCICTVIC 75
          +G CSNGLCICTVIC
Sbjct: 61 DGFCSNGLCICTVIC 75

[Close]

BLAST of MELO3C029085.2 vs. NCBI nr
Match: AHA50469.1 (defensin-like protein 3 [Citrullus lanatus])

HSP 1 Score: 94.0 bits (232), Expect = 2.3e-16
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MAG--RWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMW 60
          MAG   W+KLT V F+FLS+ASGWM+ ETEG+ C++ SPSFKG+C+S+++C+  CD    
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60

Query: 61 YNGVCSNGLCICTVIC 75
            G C++G CICTV C
Sbjct: 61 --GFCNHGSCICTVPC 70

[Close]

BLAST of MELO3C029085.2 vs. NCBI nr
Match: XP_022931766.1 (defensin Tk-AMP-D4-like [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 1  MAGR-WKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKAC-DIDMW 60
          MAG+  + L  V F+FL++ASGWM+ +TEG+ C+K + +F G CTS   C   C   + W
Sbjct: 1  MAGQSLRNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGSCTSTAACADFCITFEGW 60

Query: 61 YNGVCSNGLCICTVIC 75
           +G CS   C CT  C
Sbjct: 61 DDGFCSGDKCTCTKQC 76

[Close]

BLAST of MELO3C029085.2 vs. NCBI nr
Match: XP_023520732.1 (defensin-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 6  KKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKAC-DIDMWYNGVCS 65
          + L  V F+FL++ASGWM+ +TEG+ C+K + +F G CTS   C   C   + W +G CS
Sbjct: 7  RNLKVVVFIFLALASGWMVVQTEGRTCYKHNDAFIGPCTSTAACADFCISFEGWDDGFCS 66

Query: 66 NGLCICTVIC 75
             C CT  C
Sbjct: 67 GDKCTCTKQC 76

[Close]

BLAST of MELO3C029085.2 vs. NCBI nr
Match: XP_022975676.1 (defensin-like protein 5 [Cucurbita maxima])

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-07
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 1  MAGR-WKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKAC-DIDMW 60
          MAG+  + L  V F+FL++ SGWM+ +TEG+ C+K S +F G C +   C + C   + W
Sbjct: 1  MAGQSLRNLKIVVFIFLAVTSGWMVVQTEGRTCYKHSDAFIGPCIA-ATCAELCISFEKW 60

Query: 61 YNGVCSNGLCICTVIC 75
           +G CS   C CT  C
Sbjct: 61 DDGFCSGDKCTCTKQC 75

[Close]

BLAST of MELO3C029085.2 vs. TrEMBL
Match: tr|A0A0A0K447|A0A0A0K447_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MAGRWKKLTFVAFVF-LSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWY 60
          MAG WKKLTFVAF+F L+IASGWMM ET GKICFKQS SFKGKC SNDECVKACD DMWY
Sbjct: 1  MAGGWKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDMWY 60

Query: 61 NGVCSNGLCICTVIC 75
          +G CSNGLCICTVIC
Sbjct: 61 DGFCSNGLCICTVIC 75

[Close]

BLAST of MELO3C029085.2 vs. TrEMBL
Match: tr|W5RQN1|W5RQN1_CITLA (Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MAG--RWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMW 60
          MAG   W+KLT V F+FLS+ASGWM+ ETEG+ C++ SPSFKG+C+S+++C+  CD    
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60

Query: 61 YNGVCSNGLCICTVIC 75
            G C++G CICTV C
Sbjct: 61 --GFCNHGSCICTVPC 70

The following BLAST results are available for this feature:

BLAST of MELO3C029085.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44293.1	1.8e-29	85.33	hypothetical protein Csa_7G239060 [Cucumis sativus]	[more]
AHA50469.1	2.3e-16	55.26	defensin-like protein 3 [Citrullus lanatus]	[more]
XP_022931766.1	1.0e-08	43.42	defensin Tk-AMP-D4-like [Cucurbita moschata]	[more]
XP_023520732.1	1.4e-08	42.86	defensin-like protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022975676.1	4.4e-07	40.79	defensin-like protein 5 [Cucurbita maxima]	[more]

BLAST of MELO3C029085.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029085.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029085.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K447\|A0A0A0K447_CUCSA	1.2e-29	85.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1	[more]
tr\|W5RQN1\|W5RQN1_CITLA	1.5e-16	55.26	Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006952	defense response

Vocabulary: **INTERPRO**
Term	Definition
IPR008176	Defensin_plant
IPR036574	Scorpion_toxin-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029085.2.1	MELO3C029085.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036574	Knottin, scorpion toxin-like superfamily	GENE3D	G3DSA:3.30.30.10		coord: 25..74 e-value: 1.3E-7 score: 33.3
IPR036574	Knottin, scorpion toxin-like superfamily	SUPERFAMILY	SSF57095	Scorpion toxin-like	coord: 30..74
None	No IPR available	PFAM	PF00304	Gamma-thionin	coord: 30..74 e-value: 2.7E-6 score: 27.4
IPR008176	Defensin, plant	PROSITE	PS00940	GAMMA_THIONIN	coord: 30..53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C029085.2	Csa7G239060	Cucumber (Chinese Long) v2	cumedB512
MELO3C029085.2	CSPI07G10990	Wild cucumber (PI 183967)	cpimedB526
MELO3C029085.2	CmoCh11G020670	Cucurbita moschata (Rifu)	cmomedB098
MELO3C029085.2	Lsi11G015960	Bottle gourd (USVL1VR-Ls)	lsimedB097
MELO3C029085.2	CsGy7G010340	Cucumber (Gy14) v2	cgybmedB468
MELO3C029085.2	Cla005488	Watermelon (97103) v1	medwmB199
MELO3C029085.2	ClCG09G022780	Watermelon (Charleston Gray)	medwcgB174
MELO3C029085.2	Cla97C09G184340	Watermelon (97103) v2	medwmbB213
MELO3C029085.2	CsaV3_7G022970	Cucumber (Chinese Long) v3	cucmedB539

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029085.2	Wax gourd	medwgoB214
MELO3C029085.2	Wax gourd	medwgoB234
MELO3C029085.2	Cucumber (Gy14) v2	cgybmedB399
MELO3C029085.2	Cucumber (Gy14) v1	cgymedB179
MELO3C029085.2	Cucumber (Gy14) v1	cgymedB403
MELO3C029085.2	Cucurbita maxima (Rimu)	cmamedB109
MELO3C029085.2	Cucurbita maxima (Rimu)	cmamedB537
MELO3C029085.2	Cucurbita maxima (Rimu)	cmamedB592
MELO3C029085.2	Cucurbita moschata (Rifu)	cmomedB524
MELO3C029085.2	Cucurbita moschata (Rifu)	cmomedB581
MELO3C029085.2	Cucurbita pepo (Zucchini)	cpemedB264
MELO3C029085.2	Cucurbita pepo (Zucchini)	cpemedB316
MELO3C029085.2	Cucurbita pepo (Zucchini)	cpemedB723
MELO3C029085.2	Wild cucumber (PI 183967)	cpimedB449
MELO3C029085.2	Cucumber (Chinese Long) v2	cumedB441
MELO3C029085.2	Melon (DHL92) v3.6.1	medmedB042
MELO3C029085.2	Bottle gourd (USVL1VR-Ls)	lsimedB066
MELO3C029085.2	Watermelon (Charleston Gray)	medwcgB198
MELO3C029085.2	Watermelon (97103) v1	medwmB241
MELO3C029085.2	Silver-seed gourd	carmedB0398
MELO3C029085.2	Silver-seed gourd	carmedB0542
MELO3C029085.2	Cucumber (Chinese Long) v3	cucmedB457
MELO3C029085.2	Watermelon (97103) v2	medwmbB172