Lsi11G015960 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G015960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDefensin-like protein 3
Locationchr11 : 24322371 .. 24325599 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGTGAGATTTTGCATCCAAGTATTAAAGTGTAGTGAAAGTTAAGAGATAAAGGAATGGCGGGAGAAGGATTAAGAAAGCTCACAGCTGTGGTGTTCATCTTCCTGTTAGCCCTTGCTTCTGGTAATTAATTTGATCCTCCTGCAGCTTAGCTTGTCCATGGTTTATGCCTTGGGACTCTGGAGAGCTAATATTTAGATTGATAAATATATTACTAATAATCAAACGGCTCCAAGTAAATTAAAATTACTAATTAATATATATATATATATATCACTAATGACGACATTCTTCTTCCTCTATCATACTGTTATAAACAGGGTGGATGGTGGTGCAGACGGAGGGGCTGACTTGCTATAAACCGAGCACGGCGTTTCAGGGAACGTGCAATTCAGCGGAGGAATGTGGTAGAGTTTGTTTTTATCAAGAGGGGTGGGATGATGGGTTTTGTTCAGGTGATAAATGCATTTGTACACAGCAATGCTGTTGCTAATTAAAGTTCATGCATCAATGGCCACACTTCTTACTGATCCCTCATCAATCAAATCAAATAATTAAGCTCCTGCTGTTCTTAATTATCATCAAACGCACAAGCTAGGTTACTCATTAACATCCAAGATCCACGCTTTAAATTCTTGGTTTATGATCATCATTTCTTGTAAAATTTATATAACAAAATACCTTAGATCTGGTTTCAAATCAATATGCAGCCTATCCTCCAATCTTAAGAATTTGAGACCCTTATGGGTGCGAAATCTTGGTTATTAGATAATCATGGTATTCCGTCTTAAAATCAATATTTGATAATGAGAGAAGTAATTCAATGAGGTCTTTTCGTCTTTTCGATGTGGGATCCTAAATATGCCCCTTTAAGAGGTGCCCTTTTGGGTTTCAAGAGTCCATCATTCTTAGGTCAGATCTAAAATTTGGACCGAATAACCATTTGAGCTTCATGGGCTCTAATACCATATTAGATAAACATGAGGTTTCATCTCAAAACCAATTAACAATGAGATGGGTAATCCATGTATCTTATAAAGATTTCTATCTTTCTAATGTGAGATCCTCAATATTGTTTATATATCCTATACCAAAACCAGATGAGTTAGGCTCAAATTGACATGCACTTAAATTATTTAGGTCTCGTTTGATAACCATTTGACTTTTAGGAATTGTGTTTGTTTTCCCCCAATTTCTTTACCATAGTACTTATCTTTTTTTCAAGGAAAGATTTCAATTCTTAACCAACTGCTTTAACCAAAAACAAACTTTTAAAACCAAGGCCCCATTAGATAACGATTTTATTTTTAGTTTTTTGTTTTTGAAATTTATGTTTGTTACCTTCCAATTTTCTTACTATAGTTTTTACTCTTTTTTATTTATTTATTTAACAATTGAACCTTAGTCAATTTTTTTTTTTTTTTTTTTTAATTTTCAAAACTTGGTTTGTTTTTTATAACATTAAGTAGAAAGTGGATAACAAAATAAAGAAGCTTATAGGTGGAAGTATGATTGATAAGTTTAATCTCCAAAAACCAAATGGTTATCTATTGATAAGACCTTTTATCTACCATTTCATCATATCAACCAATGGTGTAGAAAAGAAAAATCAAATGATTTTCAAATGAGGTTTCGAGTCTGTTTGGATTGACTAGAGAAAAAAGTATTTTTTATAAAAAAAAATCATTTTTATTTAAGCTCTTTTGACAAAAACTACTTAAAATAAACTTTGAAAGTGTTTCAAAAACTATTTTGAGCGGTTGCCAAATACTTTAACTTTTTCTAAATAGATTTATTTCAAATTTAAGCACTTGAAAAGTTAAACCAAACACACTCTTAATTCTTTTAGTTTTCAAATTTTGACTTGGATTTTGAAAACATTTATAAAAAGTGGATAAGAAAACAAAGAAATGTTGGGAATGACTTTGGGTCTTTGGCCCATAGCAAAAAAGGAAAAATATATTTTTTATGAGAAAAGAGGTAGAAATTATCCCACATTGGAAGATTAAGGAGTGGCAAGTGAGTATATATACAAGTGCTTGCAAGGGAGCTTCCAAAGTTTGGTGGTGGAAACTCATAAATGGAAATCATGTTTATAAATATGCAAGCCAAAGGAAAAGTTAGCTAGCAGTTTTCTTTCTTTAGAACTTAAATTTTCTATTACAAATTGAGTTTGCAAGGATAAGAAATGAAGTATTAAACCAAATACAATATATCTCATCATCTATTGATAGATGACAAAGTAAATTAACCAACATACTGTAATAATTAACCTATGAAAACAAACTTAATCTAAAAATTACTAAGCTAGTTATCAACAACGAGGCCCAAATGATTTAAATTATTAATTATAGATAAAGTATGGAAAATAATATCAATAAATAAGGAAAATCCAAATAATAGCATTTAGCATAGAAAGAAATATTTCATTTTAAATTGATACCCCCCAACAGATTTTGTAGTTTTTTGGCCAAAATAGTAGGCTTCGTTCACATCCAATATACCATTCTGCAGTTGGAATATTTAAACAGAAATGCATATGATTATTGTATCATAATAAAGAAAAGTGGGGCTGTTGATCCTTCCCAAAAAACCTAGAGAAATAATCTAATTAGTTGAAGAAAACATTAAAAGGAAAGGAAAAGAGGTTATGTGACAGCACATAAAAGAGGGTATTGACTCCTAAGTGATAAGTATTGGCGTTGGAGTTAAAAGTGCAGGAAACAGAAAGATTAATTACAAGAGAATTAAAGACATGGCTGGATCAGAAGGATGGAGAAAACTCACATTTGCGGTGTTCATCTTCCTAGCCCTTGCTTCTGGTACTCGATCTGATATCGATTCAATTATTTCACGATTATTCGCAAAATGAAAACAGAGATTTAACAGAATTATGCTATGTTGTTACTTACAGGATGGACGGTGATGGAGACGGAAGGAAAGACTTGCTACAAGCAGAGCCCGTCGTTCAAGGGACAATGTACTTCAAAGGATGCTTGTGTTAAAGCTTGCAATAACGATATGTGGTACGACGGATTTTGCTCAAATGGTTTATGCATTTGTACCGTGCCTTGCTGACTCTGTGTCATTATGTTATGTAATTGTAATCGGTTCCGGGATTGACCAAAGTTGTTGTTATGTTATCTACGAATAAATAAGCTGCTGATGGCTTGCTATTCAACTACATTAAGAGTAGCAAGCACTAAGCACCCACATGTTTACAC

mRNA sequence

ATGGGGAAAGATAAAGGAATGGCGGGAGAAGGATTAAGAAAGCTCACAGCTGTGGTGTTCATCTTCCTGTTAGCCCTTGCTTCTGGGTGGATGGTGGTGCAGACGGAGGGGCTGACTTGCTATAAACCGAGCACGGCGTTTCAGGGAACGTGCAATTCAGCGGAGGAATGTGGTAGAGTTTGTTTTTATCAAGAGGGGTGGGATGATGGGTTTTGTTCAGGAAACAGAAAGATTAATTACAAGAGAATTAAAGACATGGCTGGATCAGAAGGATGGAGAAAACTCACATTTGCGGTGTTCATCTTCCTAGCCCTTGCTTCTGGATGGACGGTGATGGAGACGGAAGGAAAGACTTGCTACAAGCAGAGCCCGTCGTTCAAGGGACAATGTACTTCAAAGGATGCTTGTGTTAAAGCTTGCAATAACGATATGTGGTACGACGGATTTTGCTCAAATGGTTTATGCATTTGTACCGTGCCTTGCTGACTCTGTGTCATTATGTTATGTAATTGTAATCGGTTCCGGGATTGACCAAAGTTGTTGTTATGTTATCTACGAATAAATAAGCTGCTGATGGCTTGCTATTCAACTACATTAAGAGTAGCAAGCACTAAGCACCCACATGTTTACAC

Coding sequence (CDS)

ATGGGGAAAGATAAAGGAATGGCGGGAGAAGGATTAAGAAAGCTCACAGCTGTGGTGTTCATCTTCCTGTTAGCCCTTGCTTCTGGGTGGATGGTGGTGCAGACGGAGGGGCTGACTTGCTATAAACCGAGCACGGCGTTTCAGGGAACGTGCAATTCAGCGGAGGAATGTGGTAGAGTTTGTTTTTATCAAGAGGGGTGGGATGATGGGTTTTGTTCAGGAAACAGAAAGATTAATTACAAGAGAATTAAAGACATGGCTGGATCAGAAGGATGGAGAAAACTCACATTTGCGGTGTTCATCTTCCTAGCCCTTGCTTCTGGATGGACGGTGATGGAGACGGAAGGAAAGACTTGCTACAAGCAGAGCCCGTCGTTCAAGGGACAATGTACTTCAAAGGATGCTTGTGTTAAAGCTTGCAATAACGATATGTGGTACGACGGATTTTGCTCAAATGGTTTATGCATTTGTACCGTGCCTTGCTGA

Protein sequence

MGKDKGMAGEGLRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKINYKRIKDMAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC
Homology
[Close]
BLAST of Lsi11G015960 vs. TrEMBL
Match: A0A0A0K447_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G239060 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.1e-25
Identity = 56/77 (72.73%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 86  MAGSEGWRKLTFAVFIFL-ALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDM 145
           MAG  GW+KLTF  FIFL A+ASGW ++ET GK C+KQS SFKG+C S D CVKAC+ DM
Sbjct: 1   MAG--GWKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDM 60

Query: 146 WYDGFCSNGLCICTVPC 162
           WYDGFCSNGLCICTV C
Sbjct: 61  WYDGFCSNGLCICTVIC 75

[Close]
BLAST of Lsi11G015960 vs. TrEMBL
Match: W5RQN1_CITLA (Defensin-like protein 3 OS=Citrullus lanatus GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 86  MAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMW 145
           MAGSE WRKLT  +FIFL+LASGW V ETEG+ CY+ SPSFKG+C+S + C+  C     
Sbjct: 1   MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC----- 60

Query: 146 YDGFCSNGLCICTVPC 162
            DGFC++G CICTVPC
Sbjct: 61  -DGFCNHGSCICTVPC 70

[Close]
BLAST of Lsi11G015960 vs. NCBI nr
Match: gi|700189060|gb|KGN44293.1| (hypothetical protein Csa_7G239060 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 56/77 (72.73%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 86  MAGSEGWRKLTFAVFIFL-ALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDM 145
           MAG  GW+KLTF  FIFL A+ASGW ++ET GK C+KQS SFKG+C S D CVKAC+ DM
Sbjct: 1   MAG--GWKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDM 60

Query: 146 WYDGFCSNGLCICTVPC 162
           WYDGFCSNGLCICTV C
Sbjct: 61  WYDGFCSNGLCICTVIC 75

[Close]
BLAST of Lsi11G015960 vs. NCBI nr
Match: gi|558067072|gb|AHA50469.1| (defensin-like protein 3 [Citrullus lanatus])

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1 

Query: 86  MAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMW 145
           MAGSE WRKLT  +FIFL+LASGW V ETEG+ CY+ SPSFKG+C+S + C+  C     
Sbjct: 1   MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC----- 60

Query: 146 YDGFCSNGLCICTVPC 162
            DGFC++G CICTVPC
Sbjct: 61  -DGFCNHGSCICTVPC 70

The following BLAST results are available for this feature:
BLAST of Lsi11G015960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi11G015960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K447_CUCSA8.1e-2572.73Uncharacterized protein OS=Cucumis sativus GN=Csa_7G239060 PE=4 SV=1[more]
W5RQN1_CITLA1.2e-2063.16Defensin-like protein 3 OS=Citrullus lanatus GN=PDF2.3 PE=2 SV=1[more]
BLAST of Lsi11G015960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi11G015960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189060|gb|KGN44293.1|1.2e-2472.73hypothetical protein Csa_7G239060 [Cucumis sativus][more]
gi|558067072|gb|AHA50469.1|1.7e-2063.16defensin-like protein 3 [Citrullus lanatus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006952defense response
Vocabulary: INTERPRO
TermDefinition
IPR008176Defensin_plant
IPR003614Scorpion_toxin-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G015960.1Lsi11G015960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003614Knottin, scorpion toxin-likeGENE3DG3DSA:3.30.30.10coord: 117..161
score: 1.4E-7coord: 39..77
score: 2.
IPR003614Knottin, scorpion toxin-likeunknownSSF57095Scorpion toxin-likecoord: 117..161
score: 5.51E-7coord: 39..75
score: 2.1
IPR008176Defensin, plantPROSITEPS00940GAMMA_THIONINcoord: 117..140
scor
NoneNo IPR availablePANTHERPTHR33147FAMILY NOT NAMEDcoord: 90..161
score: 4.3
NoneNo IPR availablePFAMPF00304Gamma-thionincoord: 117..161
score: 7.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G015960Csa7G239060Cucumber (Chinese Long) v2culsiB499
Lsi11G015960CSPI07G10990Wild cucumber (PI 183967)cpilsiB511
Lsi11G015960CmoCh11G020670Cucurbita moschata (Rifu)cmolsiB087
Lsi11G015960Cla005488Watermelon (97103) v1lsiwmB089
Lsi11G015960ClCG09G022780Watermelon (Charleston Gray)lsiwcgB076
Lsi11G015960MELO3C029085.2Melon (DHL92) v3.6.1lsimedB097
Lsi11G015960Cla97C09G184340Watermelon (97103) v2lsiwmbB109
Lsi11G015960CsGy7G010340Cucumber (Gy14) v2cgyblsiB468
Lsi11G015960CsaV3_7G022970Cucumber (Chinese Long) v3cuclsiB533
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G015960Bottle gourd (USVL1VR-Ls)lsilsiB023
Lsi11G015960Cucumber (Gy14) v1cgylsiB180
Lsi11G015960Cucumber (Gy14) v1cgylsiB392
Lsi11G015960Cucurbita maxima (Rimu)cmalsiB101
Lsi11G015960Cucurbita maxima (Rimu)cmalsiB474
Lsi11G015960Cucurbita maxima (Rimu)cmalsiB516
Lsi11G015960Cucurbita moschata (Rifu)cmolsiB459
Lsi11G015960Cucurbita moschata (Rifu)cmolsiB497
Lsi11G015960Cucurbita pepo (Zucchini)cpelsiB201
Lsi11G015960Cucurbita pepo (Zucchini)cpelsiB531
Lsi11G015960Wild cucumber (PI 183967)cpilsiB429
Lsi11G015960Cucumber (Chinese Long) v2culsiB426
Lsi11G015960Melon (DHL92) v3.5.1lsimeB085
Lsi11G015960Melon (DHL92) v3.5.1lsimeB091
Lsi11G015960Watermelon (Charleston Gray)lsiwcgB099
Lsi11G015960Watermelon (97103) v1lsiwmB108
Lsi11G015960Cucumber (Gy14) v2cgyblsiB390
Lsi11G015960Melon (DHL92) v3.6.1lsimedB092
Lsi11G015960Silver-seed gourdcarlsiB352
Lsi11G015960Silver-seed gourdcarlsiB484
Lsi11G015960Cucumber (Chinese Long) v3cuclsiB452
Lsi11G015960Watermelon (97103) v2lsiwmbB088
Lsi11G015960Wax gourdlsiwgoB114
Lsi11G015960Wax gourdlsiwgoB126