Cla005488 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005488
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008176 Gamma thionin
Location	Chr9 : 34703366 .. 34703693 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGATCAGAAGAATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGTACTAGATCTCATCCGATGCGATCCTCCTGGTTGTTTAATTTTGTGGTTTAATATCTTTATTATAATAATGAAAATAGAGAGTAATAGAAGTTGTGTTGTGTTGTTGCTTACAGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

mRNA sequence

ATGGCGGGATCAGAAGAATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

Coding sequence (CDS)

ATGGCGGGATCAGAAGAATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

Protein sequence

MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHGSCICTVPC

Homology

[Close]

BLAST of Cla005488 vs. TrEMBL
Match: W5RQN1_CITLA (Defensin-like protein 3 OS=Citrullus lanatus GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 7.6e-36
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60
          MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60

Query: 61 HGSCICTVPC 71
          HGSCICTVPC
Sbjct: 61 HGSCICTVPC 70

[Close]

BLAST of Cla005488 vs. TrEMBL
Match: A0A0A0K447_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G239060 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.7e-15
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 1  MAGSEEWRKLTIVLFIFL-SLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC---- 60
          MAG   W+KLT V FIFL ++ASGWM+ ET G+ C++ S SFKG+C S+++C+  C    
Sbjct: 1  MAGG--WKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDM 60

Query: 61 --DGFCNHGSCICTVPC 71
            DGFC++G CICTV C
Sbjct: 61 WYDGFCSNGLCICTVIC 75

[Close]

BLAST of Cla005488 vs. NCBI nr
Match: gi|558067072|gb|AHA50469.1| (defensin-like protein 3 [Citrullus lanatus])

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60
          MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60

Query: 61 HGSCICTVPC 71
          HGSCICTVPC
Sbjct: 61 HGSCICTVPC 70

[Close]

BLAST of Cla005488 vs. NCBI nr
Match: gi|700189060|gb|KGN44293.1| (hypothetical protein Csa_7G239060 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 8.1e-15
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 1  MAGSEEWRKLTIVLFIFL-SLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC---- 60
          MAG   W+KLT V FIFL ++ASGWM+ ET G+ C++ S SFKG+C S+++C+  C    
Sbjct: 1  MAGG--WKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDM 60

Query: 61 --DGFCNHGSCICTVPC 71
            DGFC++G CICTV C
Sbjct: 61 WYDGFCSNGLCICTVIC 75

The following BLAST results are available for this feature:

BLAST of Cla005488 vs. TrEMBL


Match Name	E-value	Identity	Description
W5RQN1_CITLA	7.6e-36	100.00	Defensin-like protein 3 OS=Citrullus lanatus GN=PDF2.3 PE=2 SV=1	[more]
A0A0A0K447_CUCSA	5.7e-15	53.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G239060 PE=4 SV=1	[more]

BLAST of Cla005488 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|558067072\|gb\|AHA50469.1\|	1.1e-35	100.00	defensin-like protein 3 [Citrullus lanatus]	[more]
gi\|700189060\|gb\|KGN44293.1\|	8.1e-15	53.25	hypothetical protein Csa_7G239060 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003614	Scorpion_toxin-like
IPR008176	Defensin_plant

Vocabulary: **Biological Process**
Term	Definition
GO:0006952	defense response

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005488	Cla005488.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003614	Knottin, scorpion toxin-like	GENE3D	G3DSA:3.30.30.10		coord: 32..70 score: 3.
IPR008176	Defensin, plant	PROSITE	PS00940	GAMMA_THIONIN	coord: 32..55 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla005488	Cla97C09G184340	Watermelon (97103) v2	wmwmbB042
Cla005488	Csa7G239060	Cucumber (Chinese Long) v2	cuwmB552
Cla005488	ClCG09G022780	Watermelon (Charleston Gray)	wcgwmB008
Cla005488	CSPI07G10990	Wild cucumber (PI 183967)	cpiwmB570
Cla005488	CmoCh11G020670	Cucurbita moschata (Rifu)	cmowmB066
Cla005488	Lsi11G015960	Bottle gourd (USVL1VR-Ls)	lsiwmB089
Cla005488	CsGy7G010340	Cucumber (Gy14) v2	cgybwmB515
Cla005488	MELO3C029085.2	Melon (DHL92) v3.6.1	medwmB199
Cla005488	CsaV3_7G022970	Cucumber (Chinese Long) v3	cucwmB578

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005488	Cucurbita maxima (Rimu)	cmawmB074
Cla005488	Cucurbita maxima (Rimu)	cmawmB470
Cla005488	Cucurbita maxima (Rimu)	cmawmB508
Cla005488	Cucurbita moschata (Rifu)	cmowmB463
Cla005488	Cucurbita moschata (Rifu)	cmowmB501
Cla005488	Wild cucumber (PI 183967)	cpiwmB461
Cla005488	Melon (DHL92) v3.5.1	mewmB086
Cla005488	Melon (DHL92) v3.5.1	mewmB203
Cla005488	Watermelon (Charleston Gray)	wcgwmB172
Cla005488	Cucumber (Chinese Long) v2	cuwmB446
Cla005488	Cucurbita pepo (Zucchini)	cpewmB234
Cla005488	Cucurbita pepo (Zucchini)	cpewmB626
Cla005488	Bottle gourd (USVL1VR-Ls)	lsiwmB046
Cla005488	Cucumber (Gy14) v2	cgybwmB418
Cla005488	Melon (DHL92) v3.6.1	medwmB081
Cla005488	Silver-seed gourd	carwmB0379
Cla005488	Silver-seed gourd	carwmB0528
Cla005488	Cucumber (Chinese Long) v3	cucwmB472
Cla005488	Watermelon (97103) v2	wmwmbB017
Cla005488	Wax gourd	wgowmB251
Cla005488	Wax gourd	wgowmB359
Cla005488	Watermelon (97103) v1	wmwmB028
Cla005488	Cucumber (Gy14) v1	cgywmB181
Cla005488	Cucumber (Gy14) v1	cgywmB448