MELO3C029080.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029080.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCytochrome b-c1 complex subunit 7
Locationchr01 : 20593321 .. 20593539 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAGATCGAAATGGTATCCTTTTGGAGTCATTCTCTTTCCCCAAAGAAGAACTAGTTCACTTGTCATTGCATGAAAGCACTCACCCAACAGCTTGTAATTATGGCAACGATCCGTACGATGATATTGATGTGAAGGAGACTTTGAATCAACTACCAAGGGAGATTCTTAATATGCGCAATCAACTTCTGAAGCAGGCCATGAACCTTCCGTGA

mRNA sequence

ATGGAGAAAGATCGAAATGGTATCCTTTTGGAGTCATTCTCTTTCCCCAAAGAAGAACTAGTTCACTTGTCATTGCATGAAAGCACTCACCCAACAGCTTGTAATTATGGCAACGATCCGTACGATGATATTGATGTGAAGGAGACTTTGAATCAACTACCAAGGGAGATTCTTAATATGCGCAATCAACTTCTGAAGCAGGCCATGAACCTTCCGTGA

Coding sequence (CDS)

ATGGAGAAAGATCGAAATGGTATCCTTTTGGAGTCATTCTCTTTCCCCAAAGAAGAACTAGTTCACTTGTCATTGCATGAAAGCACTCACCCAACAGCTTGTAATTATGGCAACGATCCGTACGATGATATTGATGTGAAGGAGACTTTGAATCAACTACCAAGGGAGATTCTTAATATGCGCAATCAACTTCTGAAGCAGGCCATGAACCTTCCGTGA

Protein sequence

MEKDRNGILLESFSFPKEELVHLSLHESTHPTACNYGNDPYDDIDVKETLNQLPREILNMRNQLLKQAMNLP
Homology
[Close]
BLAST of MELO3C029080.2 vs. NCBI nr
Match: XP_012465033.1 (PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X2 [Gossypium raimondii] >KJB80690.1 hypothetical protein B456_013G110700 [Gossypium raimondii])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. NCBI nr
Match: KJB80691.1 (hypothetical protein B456_013G110700 [Gossypium raimondii])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. NCBI nr
Match: XP_012465032.1 (PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X1 [Gossypium raimondii] >KJB80692.1 hypothetical protein B456_013G110700 [Gossypium raimondii])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. NCBI nr
Match: XP_022937393.1 (cytochrome b-c1 complex subunit 7-2-like [Cucurbita moschata] >XP_023535588.1 cytochrome b-c1 complex subunit 7-2-like [Cucurbita pepo subsp. pepo] >XP_023535589.1 cytochrome b-c1 complex subunit 7-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+        ++      NYG       DPY DIDVKE LN+LPREI++ RNQ
Sbjct: 5  LQSFIDPKKNWFARQHMKALTQRLRNYGLRYDDLYDPYYDIDVKEALNRLPREIVDARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. NCBI nr
Match: XP_022976218.1 (cytochrome b-c1 complex subunit 7-2-like [Cucurbita maxima])

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+        ++      NYG       DPY DIDVKE LN+LPREI++ RNQ
Sbjct: 5  LQSFIDPKKNWFARQHMKALTQRLRNYGLRYDDLYDPYYDIDVKEALNRLPREIVDARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. TAIR10
Match: AT4G32470.1 (Cytochrome bd ubiquinol oxidase, 14kDa subunit)

HSP 1 Score: 43.9 bits (102), Expect = 4.9e-05
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0 

Query: 9  LLESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRN 68
          LL++F  PK+  +     ++       YG       D Y  +D+KE +N+LPRE+++ RN
Sbjct: 4  LLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVDARN 63

Query: 69 QLLKQAMNL 72
          Q LK+AM+L
Sbjct: 64 QRLKRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. TAIR10
Match: AT5G25450.1 (Cytochrome bd ubiquinol oxidase, 14kDa subunit)

HSP 1 Score: 43.5 bits (101), Expect = 6.4e-05
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 39 DPYDDIDVKETLNQLPREILNMRNQLLKQAMNL 72
          DP  D+D+KE LN+LPREI++ RNQ L +AM+L
Sbjct: 40 DPLYDLDIKEALNRLPREIVDARNQRLMRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. Swiss-Prot
Match: sp|Q9SUU5|QCR71_ARATH (Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana OX=3702 GN=QCR7-1 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 8.8e-04
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0 

Query: 9  LLESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRN 68
          LL++F  PK+  +     ++       YG       D Y  +D+KE +N+LPRE+++ RN
Sbjct: 4  LLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVDARN 63

Query: 69 QLLKQAMNL 72
          Q LK+AM+L
Sbjct: 64 QRLKRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. TrEMBL
Match: tr|A0A0D2VC65|A0A0D2VC65_GOSRA (Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. TrEMBL
Match: tr|A0A0D2W4Y1|A0A0D2W4Y1_GOSRA (Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. TrEMBL
Match: tr|A0A0D2SC48|A0A0D2SC48_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]
BLAST of MELO3C029080.2 vs. TrEMBL
Match: tr|A0A2N9ISI5|A0A2N9ISI5_FAGSY (Cytochrome b-c1 complex subunit 7 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54985 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.5e-04
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 0 

Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+        +S       YG       DPY D+DVKE LN+LPREI++ RNQ
Sbjct: 5  LQSFLDPKKNWFAAQHMKSISNRLRRYGLRYDDLYDPYYDLDVKEALNRLPREIIDARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

The following BLAST results are available for this feature:
BLAST of MELO3C029080.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_012465033.14.4e-0445.59PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X2 [Gossypium raimondii] ... [more]
KJB80691.14.4e-0445.59hypothetical protein B456_013G110700 [Gossypium raimondii][more]
XP_012465032.14.4e-0445.59PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X1 [Gossypium raimondii] ... [more]
XP_022937393.15.8e-0447.06cytochrome b-c1 complex subunit 7-2-like [Cucurbita moschata] >XP_023535588.1 cy... [more]
XP_022976218.15.8e-0447.06cytochrome b-c1 complex subunit 7-2-like [Cucurbita maxima][more]
BLAST of MELO3C029080.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32470.14.9e-0536.23Cytochrome bd ubiquinol oxidase, 14kDa subunit[more]
AT5G25450.16.4e-0560.61Cytochrome bd ubiquinol oxidase, 14kDa subunit[more]
BLAST of MELO3C029080.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SUU5|QCR71_ARATH8.8e-0436.23Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana OX=3702 GN=QCR7-1 PE... [more]
BLAST of MELO3C029080.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0D2VC65|A0A0D2VC65_GOSRA2.9e-0445.59Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G11... [more]
tr|A0A0D2W4Y1|A0A0D2W4Y1_GOSRA2.9e-0445.59Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G11... [more]
tr|A0A0D2SC48|A0A0D2SC48_GOSRA2.9e-0445.59Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=4 ... [more]
tr|A0A2N9ISI5|A0A2N9ISI5_FAGSY8.5e-0445.59Cytochrome b-c1 complex subunit 7 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54985 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005750mitochondrial respiratory chain complex III
Vocabulary: Biological Process
TermDefinition
GO:0006122mitochondrial electron transport, ubiquinol to cytochrome c
Vocabulary: INTERPRO
TermDefinition
IPR003197QCR7
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016020 membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005750 mitochondrial respiratory chain complex III
cellular_component GO:0005739 mitochondrion
cellular_component GO:0070469 respiratory chain
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029080.2.1MELO3C029080.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003197Cytochrome b-c1 complex subunit 7PRODOMPD008153coord: 39..71
e-value: 1.0E-4
score: 102.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C029080.2CsaV3_7G023190Cucumber (Chinese Long) v3cucmedB539
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029080.2Wax gourdmedwgoB214
MELO3C029080.2Cucumber (Gy14) v2cgybmedB468
MELO3C029080.2Cucumber (Gy14) v1cgymedB406
MELO3C029080.2Cucurbita maxima (Rimu)cmamedB537
MELO3C029080.2Cucurbita moschata (Rifu)cmomedB524
MELO3C029080.2Cucurbita pepo (Zucchini)cpemedB264
MELO3C029080.2Wild cucumber (PI 183967)cpimedB526
MELO3C029080.2Cucumber (Chinese Long) v2cumedB512
MELO3C029080.2Bottle gourd (USVL1VR-Ls)lsimedB097
MELO3C029080.2Watermelon (Charleston Gray)medwcgB174
MELO3C029080.2Watermelon (97103) v1medwmB199
MELO3C029080.2Silver-seed gourdcarmedB0542
MELO3C029080.2Watermelon (97103) v2medwmbB213