CsaV3_7G023190 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G023190
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCytochrome bd ubiquinol oxidase, 14kDa subunit
Locationchr7 : 12170613 .. 12170973 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCTTTCCAACCATAAATCTGATAGCAAGACTTTCCCAGAATTAACCCAAAAAAGGTATGTTGAAAAACAGGAGAAAGTGCGCAGAGAAATCAAAGAGCAGTTTTTGCAGAGGAATGAAGAGAGATCAAAATGGTGTCCCTTTTGCGGTCCTTCTTCGATCCAAAAAAGAACTGTTCACTCGTCATCGCATGAAAGCACTGCCACTCACCCAACACCTCATAATTATGGCAACGATCTGTACTATGATATTGATGTGAAGGAGACTTTGAACCAACTTCCAAGGGAGATTCTTGATATGCACATTCAACGTCTGAAGCAGGCCATGAACCTTTTCCATGAAGCATCAATACCTTTCTGA

mRNA sequence

TTTCTTTCCAACCATAAATCTGATAGCAAGACTTTCCCAGAATTAACCCAAAAAAGGTATGTTGAAAAACAGGAGAAAGTGCGCAGAGAAATCAAAGAGCAGTTTTTGCAGAGGAATGAAGAGAGATCAAAATGGTGTCCCTTTTGCGGTCCTTCTTCGATCCAAAAAAGAACTGTTCACTCGTCATCGCATGAAAGCACTGCCACTCACCCAACACCTCATAATTATGGCAACGATCTGTACTATGATATTGATGTGAAGGAGACTTTGAACCAACTTCCAAGGGAGATTCTTGATATGCACATTCAACGTCTGAAGCAGGCCATGAACCTTTTCCATGAAGCATCAATACCTTTCTGA

Coding sequence (CDS)

TTTCTTTCCAACCATAAATCTGATAGCAAGACTTTCCCAGAATTAACCCAAAAAAGGTATGTTGAAAAACAGGAGAAAGTGCGCAGAGAAATCAAAGAGCAGTTTTTGCAGAGGAATGAAGAGAGATCAAAATGGTGTCCCTTTTGCGGTCCTTCTTCGATCCAAAAAAGAACTGTTCACTCGTCATCGCATGAAAGCACTGCCACTCACCCAACACCTCATAATTATGGCAACGATCTGTACTATGATATTGATGTGAAGGAGACTTTGAACCAACTTCCAAGGGAGATTCTTGATATGCACATTCAACGTCTGAAGCAGGCCATGAACCTTTTCCATGAAGCATCAATACCTTTCTGA

Protein sequence

FLSNHKSDSKTFPELTQKRYVEKQEKVRREIKEQFLQRNEERSKWCPFCGPSSIQKRTVHSSSHESTATHPTPHNYGNDLYYDIDVKETLNQLPREILDMHIQRLKQAMNLFHEASIPF
Homology
[Close]
BLAST of CsaV3_7G023190 vs. TAIR10
Match: AT4G32470.1 (Cytochrome bd ubiquinol oxidase, 14kDa subunit)

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 19/33 (57.58%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 79  DLYYDIDVKETLNQLPREILDMHIQRLKQAMNL 112
           D YY +D+KE +N+LPRE++D   QRLK+AM+L
Sbjct: 40  DQYYSMDIKEAMNRLPREVVDARNQRLKRAMDL 72

[Close]
BLAST of CsaV3_7G023190 vs. TAIR10
Match: AT5G25450.1 (Cytochrome bd ubiquinol oxidase, 14kDa subunit)

HSP 1 Score: 45.1 bits (105), Expect = 3.6e-05
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 78  NDLY---YDIDVKETLNQLPREILDMHIQRLKQAMNL 112
           +DLY   YD+D+KE LN+LPREI+D   QRL +AM+L
Sbjct: 36  DDLYDPLYDLDIKEALNRLPREIVDARNQRLMRAMDL 72

[Close]
BLAST of CsaV3_7G023190 vs. Swiss-Prot
Match: sp|P48502|QCR7_SOLTU (Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.3e-04
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 75  NYG---NDLY---YDIDVKETLNQLPREILDMHIQRLKQAMNL 112
           NYG   +DLY   YD+DVKE LN+LPREI+D   QRL +AM+L
Sbjct: 31  NYGLRHDDLYDPMYDLDVKEALNRLPREIVDARNQRLLRAMDL 73

[Close]
BLAST of CsaV3_7G023190 vs. Swiss-Prot
Match: sp|Q9SUU5|QCR71_ARATH (Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana OX=3702 GN=QCR7-1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.0e-04
Identity = 19/33 (57.58%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 79  DLYYDIDVKETLNQLPREILDMHIQRLKQAMNL 112
           D YY +D+KE +N+LPRE++D   QRLK+AM+L
Sbjct: 40  DQYYSMDIKEAMNRLPREVVDARNQRLKRAMDL 72

[Close]
BLAST of CsaV3_7G023190 vs. Swiss-Prot
Match: sp|F4JWS8|QCR72_ARATH (Cytochrome b-c1 complex subunit 7-2 OS=Arabidopsis thaliana OX=3702 GN=QCR7-2 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.6e-04
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 78  NDLY---YDIDVKETLNQLPREILDMHIQRLKQAMNL 112
           +DLY   YD+D+KE LN+LPREI+D   QRL +AM+L
Sbjct: 36  DDLYDPLYDLDIKEALNRLPREIVDARNQRLMRAMDL 72

The following BLAST results are available for this feature:
BLAST of CsaV3_7G023190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G023190 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32470.11.6e-0557.58Cytochrome bd ubiquinol oxidase, 14kDa subunit[more]
AT5G25450.13.6e-0559.46Cytochrome bd ubiquinol oxidase, 14kDa subunit[more]
BLAST of CsaV3_7G023190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P48502|QCR7_SOLTU2.3e-0460.47Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum OX=4113 PE=1 SV=1[more]
sp|Q9SUU5|QCR71_ARATH3.0e-0457.58Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana OX=3702 GN=QCR7-1 PE... [more]
sp|F4JWS8|QCR72_ARATH6.6e-0459.46Cytochrome b-c1 complex subunit 7-2 OS=Arabidopsis thaliana OX=3702 GN=QCR7-2 PE... [more]
BLAST of CsaV3_7G023190 vs. TrEMBL
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005750mitochondrial respiratory chain complex III
Vocabulary: Biological Process
TermDefinition
GO:0006122mitochondrial electron transport, ubiquinol to cytochrome c
Vocabulary: INTERPRO
TermDefinition
IPR003197QCR7
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component GO:0005750 mitochondrial respiratory chain complex III
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G023190.1CsaV3_7G023190.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..78
IPR003197Cytochrome b-c1 complex subunit 7PRODOMPD008153coord: 75..111
e-value: 1.0E-5
score: 110.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G023190MELO3C029080.2Melon (DHL92) v3.6.1cucmedB539
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G023190Cucumber (Chinese Long) v3cuccucB215
CsaV3_7G023190Silver-seed gourdcarcucB0572
CsaV3_7G023190Cucumber (Gy14) v2cgybcucB347
CsaV3_7G023190Cucumber (Gy14) v1cgycucB367
CsaV3_7G023190Cucurbita maxima (Rimu)cmacucB0640
CsaV3_7G023190Cucurbita moschata (Rifu)cmocucB0624
CsaV3_7G023190Cucurbita pepo (Zucchini)cpecucB0324
CsaV3_7G023190Wild cucumber (PI 183967)cpicucB414
CsaV3_7G023190Bottle gourd (USVL1VR-Ls)cuclsiB533
CsaV3_7G023190Melon (DHL92) v3.5.1cucmeB551
CsaV3_7G023190Watermelon (Charleston Gray)cucwcgB536
CsaV3_7G023190Watermelon (97103) v1cucwmB578
CsaV3_7G023190Watermelon (97103) v2cucwmbB544
CsaV3_7G023190Watermelon (97103) v2cucwmbB582
CsaV3_7G023190Wax gourdcucwgoB696