MELO3C029080.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029080.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Cytochrome b-c1 complex subunit 7
Location	chr01 : 20593321 .. 20593539 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGATCGAAATGGTATCCTTTTGGAGTCATTCTCTTTCCCCAAAGAAGAACTAGTTCACTTGTCATTGCATGAAAGCACTCACCCAACAGCTTGTAATTATGGCAACGATCCGTACGATGATATTGATGTGAAGGAGACTTTGAATCAACTACCAAGGGAGATTCTTAATATGCGCAATCAACTTCTGAAGCAGGCCATGAACCTTCCGTGA

mRNA sequence

ATGGAGAAAGATCGAAATGGTATCCTTTTGGAGTCATTCTCTTTCCCCAAAGAAGAACTAGTTCACTTGTCATTGCATGAAAGCACTCACCCAACAGCTTGTAATTATGGCAACGATCCGTACGATGATATTGATGTGAAGGAGACTTTGAATCAACTACCAAGGGAGATTCTTAATATGCGCAATCAACTTCTGAAGCAGGCCATGAACCTTCCGTGA

Coding sequence (CDS)

ATGGAGAAAGATCGAAATGGTATCCTTTTGGAGTCATTCTCTTTCCCCAAAGAAGAACTAGTTCACTTGTCATTGCATGAAAGCACTCACCCAACAGCTTGTAATTATGGCAACGATCCGTACGATGATATTGATGTGAAGGAGACTTTGAATCAACTACCAAGGGAGATTCTTAATATGCGCAATCAACTTCTGAAGCAGGCCATGAACCTTCCGTGA

Protein sequence

MEKDRNGILLESFSFPKEELVHLSLHESTHPTACNYGNDPYDDIDVKETLNQLPREILNMRNQLLKQAMNLP

Homology

[Close]

BLAST of MELO3C029080.2 vs. NCBI nr
Match: XP_012465033.1 (PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X2 [Gossypium raimondii] >KJB80690.1 hypothetical protein B456_013G110700 [Gossypium raimondii])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. NCBI nr
Match: KJB80691.1 (hypothetical protein B456_013G110700 [Gossypium raimondii])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. NCBI nr
Match: XP_012465032.1 (PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X1 [Gossypium raimondii] >KJB80692.1 hypothetical protein B456_013G110700 [Gossypium raimondii])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. NCBI nr
Match: XP_022937393.1 (cytochrome b-c1 complex subunit 7-2-like [Cucurbita moschata] >XP_023535588.1 cytochrome b-c1 complex subunit 7-2-like [Cucurbita pepo subsp. pepo] >XP_023535589.1 cytochrome b-c1 complex subunit 7-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+        ++      NYG       DPY DIDVKE LN+LPREI++ RNQ
Sbjct: 5  LQSFIDPKKNWFARQHMKALTQRLRNYGLRYDDLYDPYYDIDVKEALNRLPREIVDARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. NCBI nr
Match: XP_022976218.1 (cytochrome b-c1 complex subunit 7-2-like [Cucurbita maxima])

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+        ++      NYG       DPY DIDVKE LN+LPREI++ RNQ
Sbjct: 5  LQSFIDPKKNWFARQHMKALTQRLRNYGLRYDDLYDPYYDIDVKEALNRLPREIVDARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. TAIR10
Match: AT4G32470.1 (Cytochrome bd ubiquinol oxidase, 14kDa subunit)

HSP 1 Score: 43.9 bits (102), Expect = 4.9e-05
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 9  LLESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRN 68
          LL++F  PK+  +     ++       YG       D Y  +D+KE +N+LPRE+++ RN
Sbjct: 4  LLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVDARN 63

Query: 69 QLLKQAMNL 72
          Q LK+AM+L
Sbjct: 64 QRLKRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. TAIR10
Match: AT5G25450.1 (Cytochrome bd ubiquinol oxidase, 14kDa subunit)

HSP 1 Score: 43.5 bits (101), Expect = 6.4e-05
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 39 DPYDDIDVKETLNQLPREILNMRNQLLKQAMNL 72
          DP  D+D+KE LN+LPREI++ RNQ L +AM+L
Sbjct: 40 DPLYDLDIKEALNRLPREIVDARNQRLMRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. Swiss-Prot
Match: sp|Q9SUU5|QCR71_ARATH (Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana OX=3702 GN=QCR7-1 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 8.8e-04
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 9  LLESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRN 68
          LL++F  PK+  +     ++       YG       D Y  +D+KE +N+LPRE+++ RN
Sbjct: 4  LLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVDARN 63

Query: 69 QLLKQAMNL 72
          Q LK+AM+L
Sbjct: 64 QRLKRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. TrEMBL
Match: tr|A0A0D2VC65|A0A0D2VC65_GOSRA (Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. TrEMBL
Match: tr|A0A0D2W4Y1|A0A0D2W4Y1_GOSRA (Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. TrEMBL
Match: tr|A0A0D2SC48|A0A0D2SC48_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2 vs. TrEMBL
Match: tr|A0A2N9ISI5|A0A2N9ISI5_FAGSY (Cytochrome b-c1 complex subunit 7 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54985 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.5e-04
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+        +S       YG       DPY D+DVKE LN+LPREI++ RNQ
Sbjct: 5  LQSFLDPKKNWFAAQHMKSISNRLRRYGLRYDDLYDPYYDLDVKEALNRLPREIIDARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

The following BLAST results are available for this feature:

BLAST of MELO3C029080.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_012465033.1	4.4e-04	45.59	PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X2 [Gossypium raimondii] ...	[more]
KJB80691.1	4.4e-04	45.59	hypothetical protein B456_013G110700 [Gossypium raimondii]	[more]
XP_012465032.1	4.4e-04	45.59	PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X1 [Gossypium raimondii] ...	[more]
XP_022937393.1	5.8e-04	47.06	cytochrome b-c1 complex subunit 7-2-like [Cucurbita moschata] >XP_023535588.1 cy...	[more]
XP_022976218.1	5.8e-04	47.06	cytochrome b-c1 complex subunit 7-2-like [Cucurbita maxima]	[more]

BLAST of MELO3C029080.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32470.1	4.9e-05	36.23	Cytochrome bd ubiquinol oxidase, 14kDa subunit	[more]
AT5G25450.1	6.4e-05	60.61	Cytochrome bd ubiquinol oxidase, 14kDa subunit	[more]

BLAST of MELO3C029080.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SUU5\|QCR71_ARATH	8.8e-04	36.23	Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana OX=3702 GN=QCR7-1 PE...	[more]

BLAST of MELO3C029080.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0D2VC65\|A0A0D2VC65_GOSRA	2.9e-04	45.59	Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G11...	[more]
tr\|A0A0D2W4Y1\|A0A0D2W4Y1_GOSRA	2.9e-04	45.59	Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G11...	[more]
tr\|A0A0D2SC48\|A0A0D2SC48_GOSRA	2.9e-04	45.59	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=4 ...	[more]
tr\|A0A2N9ISI5\|A0A2N9ISI5_FAGSY	8.5e-04	45.59	Cytochrome b-c1 complex subunit 7 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54985 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005750	mitochondrial respiratory chain complex III

Vocabulary: **Biological Process**
Term	Definition
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c

Vocabulary: **INTERPRO**
Term	Definition
IPR003197	QCR7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0070469	respiratory chain
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029080.2.1	MELO3C029080.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003197	Cytochrome b-c1 complex subunit 7	PRODOM	PD008153		coord: 39..71 e-value: 1.0E-4 score: 102.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C029080.2	CsaV3_7G023190	Cucumber (Chinese Long) v3	cucmedB539

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029080.2	Watermelon (97103) v2	medwmbB213
MELO3C029080.2	Wax gourd	medwgoB214
MELO3C029080.2	Cucumber (Gy14) v2	cgybmedB468
MELO3C029080.2	Cucumber (Gy14) v1	cgymedB406
MELO3C029080.2	Cucurbita maxima (Rimu)	cmamedB537
MELO3C029080.2	Cucurbita moschata (Rifu)	cmomedB524
MELO3C029080.2	Cucurbita pepo (Zucchini)	cpemedB264
MELO3C029080.2	Wild cucumber (PI 183967)	cpimedB526
MELO3C029080.2	Cucumber (Chinese Long) v2	cumedB512
MELO3C029080.2	Bottle gourd (USVL1VR-Ls)	lsimedB097
MELO3C029080.2	Watermelon (Charleston Gray)	medwcgB174
MELO3C029080.2	Watermelon (97103) v1	medwmB199
MELO3C029080.2	Silver-seed gourd	carmedB0542