MELO3C029080.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029080.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Cytochrome b-c1 complex subunit 7
Location	chr01 : 20593321 .. 20593539 (+)
Sequence length	219

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGATCGAAATGGTATCCTTTTGGAGTCATTCTCTTTCCCCAAAGAAGAACTAGTTCACTTGTCATTGCATGAAAGCACTCACCCAACAGCTTGTAATTATGGCAACGATCCGTACGATGATATTGATGTGAAGGAGACTTTGAATCAACTACCAAGGGAGATTCTTAATATGCGCAATCAACTTCTGAAGCAGGCCATGAACCTTCCGTGA

mRNA sequence

ATGGAGAAAGATCGAAATGGTATCCTTTTGGAGTCATTCTCTTTCCCCAAAGAAGAACTAGTTCACTTGTCATTGCATGAAAGCACTCACCCAACAGCTTGTAATTATGGCAACGATCCGTACGATGATATTGATGTGAAGGAGACTTTGAATCAACTACCAAGGGAGATTCTTAATATGCGCAATCAACTTCTGAAGCAGGCCATGAACCTTCCGTGA

Coding sequence (CDS)

ATGGAGAAAGATCGAAATGGTATCCTTTTGGAGTCATTCTCTTTCCCCAAAGAAGAACTAGTTCACTTGTCATTGCATGAAAGCACTCACCCAACAGCTTGTAATTATGGCAACGATCCGTACGATGATATTGATGTGAAGGAGACTTTGAATCAACTACCAAGGGAGATTCTTAATATGCGCAATCAACTTCTGAAGCAGGCCATGAACCTTCCGTGA

Protein sequence

MEKDRNGILLESFSFPKEELVHLSLHESTHPTACNYGNDPYDDIDVKETLNQLPREILNMRNQLLKQAMNLP

Homology

[Close]

BLAST of MELO3C029080.2.1 vs. NCBI nr
Match: XP_012465033.1 (PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X2 [Gossypium raimondii] >KJB80690.1 hypothetical protein B456_013G110700 [Gossypium raimondii])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. NCBI nr
Match: KJB80691.1 (hypothetical protein B456_013G110700 [Gossypium raimondii])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. NCBI nr
Match: XP_012465032.1 (PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X1 [Gossypium raimondii] >KJB80692.1 hypothetical protein B456_013G110700 [Gossypium raimondii])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. NCBI nr
Match: XP_022937393.1 (cytochrome b-c1 complex subunit 7-2-like [Cucurbita moschata] >XP_023535588.1 cytochrome b-c1 complex subunit 7-2-like [Cucurbita pepo subsp. pepo] >XP_023535589.1 cytochrome b-c1 complex subunit 7-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+        ++      NYG       DPY DIDVKE LN+LPREI++ RNQ
Sbjct: 5  LQSFIDPKKNWFARQHMKALTQRLRNYGLRYDDLYDPYYDIDVKEALNRLPREIVDARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. NCBI nr
Match: XP_022976218.1 (cytochrome b-c1 complex subunit 7-2-like [Cucurbita maxima])

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+        ++      NYG       DPY DIDVKE LN+LPREI++ RNQ
Sbjct: 5  LQSFIDPKKNWFARQHMKALTQRLRNYGLRYDDLYDPYYDIDVKEALNRLPREIVDARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. TAIR10
Match: AT4G32470.1 (Cytochrome bd ubiquinol oxidase, 14kDa subunit)

HSP 1 Score: 43.9 bits (102), Expect = 4.9e-05
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 9  LLESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRN 68
          LL++F  PK+  +     ++       YG       D Y  +D+KE +N+LPRE+++ RN
Sbjct: 4  LLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVDARN 63

Query: 69 QLLKQAMNL 72
          Q LK+AM+L
Sbjct: 64 QRLKRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. TAIR10
Match: AT5G25450.1 (Cytochrome bd ubiquinol oxidase, 14kDa subunit)

HSP 1 Score: 43.5 bits (101), Expect = 6.4e-05
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 39 DPYDDIDVKETLNQLPREILNMRNQLLKQAMNL 72
          DP  D+D+KE LN+LPREI++ RNQ L +AM+L
Sbjct: 40 DPLYDLDIKEALNRLPREIVDARNQRLMRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. Swiss-Prot
Match: sp|Q9SUU5|QCR71_ARATH (Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana OX=3702 GN=QCR7-1 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 8.8e-04
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 9  LLESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRN 68
          LL++F  PK+  +     ++       YG       D Y  +D+KE +N+LPRE+++ RN
Sbjct: 4  LLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVDARN 63

Query: 69 QLLKQAMNL 72
          Q LK+AM+L
Sbjct: 64 QRLKRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. TrEMBL
Match: tr|A0A0D2VC65|A0A0D2VC65_GOSRA (Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. TrEMBL
Match: tr|A0A0D2W4Y1|A0A0D2W4Y1_GOSRA (Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. TrEMBL
Match: tr|A0A0D2SC48|A0A0D2SC48_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+  +     +S       YG       DPY D+D+KE LN+LPREI+N RNQ
Sbjct: 5  LQSFLDPKKSWLAALHMKSLSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPREIVNARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

[Close]

BLAST of MELO3C029080.2.1 vs. TrEMBL
Match: tr|A0A2N9ISI5|A0A2N9ISI5_FAGSY (Cytochrome b-c1 complex subunit 7 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54985 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.5e-04
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 10 LESFSFPKEELVHLSLHESTHPTACNYG------NDPYDDIDVKETLNQLPREILNMRNQ 69
          L+SF  PK+        +S       YG       DPY D+DVKE LN+LPREI++ RNQ
Sbjct: 5  LQSFLDPKKNWFAAQHMKSISNRLRRYGLRYDDLYDPYYDLDVKEALNRLPREIIDARNQ 64

Query: 70 LLKQAMNL 72
           LK+AM+L
Sbjct: 65 RLKRAMDL 72

The following BLAST results are available for this feature:

BLAST of MELO3C029080.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_012465033.1	4.4e-04	45.59	PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X2 [Gossypium raimondii] ...	[more]
KJB80691.1	4.4e-04	45.59	hypothetical protein B456_013G110700 [Gossypium raimondii]	[more]
XP_012465032.1	4.4e-04	45.59	PREDICTED: cytochrome b-c1 complex subunit 7-2 isoform X1 [Gossypium raimondii] ...	[more]
XP_022937393.1	5.8e-04	47.06	cytochrome b-c1 complex subunit 7-2-like [Cucurbita moschata] >XP_023535588.1 cy...	[more]
XP_022976218.1	5.8e-04	47.06	cytochrome b-c1 complex subunit 7-2-like [Cucurbita maxima]	[more]

BLAST of MELO3C029080.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32470.1	4.9e-05	36.23	Cytochrome bd ubiquinol oxidase, 14kDa subunit	[more]
AT5G25450.1	6.4e-05	60.61	Cytochrome bd ubiquinol oxidase, 14kDa subunit	[more]

BLAST of MELO3C029080.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SUU5\|QCR71_ARATH	8.8e-04	36.23	Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana OX=3702 GN=QCR7-1 PE...	[more]

BLAST of MELO3C029080.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0D2VC65\|A0A0D2VC65_GOSRA	2.9e-04	45.59	Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G11...	[more]
tr\|A0A0D2W4Y1\|A0A0D2W4Y1_GOSRA	2.9e-04	45.59	Cytochrome b-c1 complex subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_013G11...	[more]
tr\|A0A0D2SC48\|A0A0D2SC48_GOSRA	2.9e-04	45.59	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G110700 PE=4 ...	[more]
tr\|A0A2N9ISI5\|A0A2N9ISI5_FAGSY	8.5e-04	45.59	Cytochrome b-c1 complex subunit 7 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54985 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005750	mitochondrial respiratory chain complex III

Vocabulary: **Biological Process**
Term	Definition
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c

Vocabulary: **INTERPRO**
Term	Definition
IPR003197	QCR7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
cellular_component	GO:0016020	membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0070469	respiratory chain
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C029080.2	MELO3C029080.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C029080.2.1.CDS.1	MELO3C029080.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C029080.2.1.exon.1	MELO3C029080.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C029080.2.1	MELO3C029080.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003197	Cytochrome b-c1 complex subunit 7	PRODOM	PD008153		coord: 39..71 e-value: 1.0E-4 score: 102.0