CsGy3G017420 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G017420
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pentatricopeptide repeat-containing protein isoform X2
Location	Chr3 : 13391187 .. 13393788 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAATAGTGAAATTATCTTTTGAAAAATGGGTTTTGAGATATTTGGGGGCAATTTTCCGTAGAAAAATTGGGAATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGTAAGCTCTCCCTTTCTCCTTATCTCTATTTCTCTCAACTTTCGTGCTTGGTTACTGAGAAAAATTCAAAAAGAAAACGAGAAATTTGTTCTTATATACGAAGTATGCTTTGTGTGGACGATGAAATTTATTCATTTCCTTGAATAGCGATTTCGTGTTTTGCCTGGTTCCTCCTAGAGCTGGAAATTTTGATTTAAATTCGTTGAAATCTATTGACATTTGATCTCATTTGCTGGTTCAGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTAAGTCTTCTCGTCAGTTACTTCGCTGCTAGCGATGATAAACGGAAATTGGGTTTAATTTTTACGCAATTCCTGAAATTTTCTTTCACTTCTTACCCAAGAGTTATTTTGTAGGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAGCTCTCTTGTTCCTGTCTCACCAATCCTATATATCCTCCATCCATAAGTAGGGTGACATGATGCCTATTCAAATTGGATTTTCATAGTAGAAAATCTTTTCTTTCATCTTCATTGGGGGTATATTTGGGATGCATTTTCAGACTTTTGGAATTATTTTTGACAGCATAACCAAACATCAAGCAAATTTTAAATAGTACTTTTGATTTCCAACATAAATTTTCACCATATTTAAATTCAACACCAAAGTCACCCTTAATGTAATGCAGTCTCTTTTTATTTGTTATATGATGTAACTCTAAATTTACCTTCATTCATGAGCTTGAGCTTTTGGTTTCAATGGGTGATTTAACATGGTATCTAAGTGGATGGTCTAGGTGATCCTCTATTCAAATCCATGCAACATTAGTTCCTTTTCAATCAATATGTTAGTTCCTTTTCAATTAATATTGATTTTCACTTGTTCGATAGTCTATATATTTCAAGCCACAAGTGAGGGGAGTGTTAGATGGAAAATTCAATGATCTAACATTGCTTCTTGTTGCTACTTTTGAACTTGTTAACTTCTGGGTCGACCTTTTTAAGTACTGACTTCGCATTTTAGGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGGTACATTCTTACATGTTTCTTTCATGTCCATTCTTGCTCTGCCCTTTTGTCCTGAGGATGTTGCTGACGAAATGAGTTAAGCAAAATGAGTATACTATTGTAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTCGTTTTATTGCTACAGAAGTAGTTTCAACTGCATTGGTCACAAATCTCTAACCATTCCTTCCACTCCATATTGATTAAAAAAGGGATAAAAGTTATGATACATGGTGCCGATATATCATTTTTAGTTCAATCATATTGAGTTCCATGGGTAACGAAATTTAACTATGATTGACTTAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAAATATATACACATTGTAGTTCCTTGTCGAAGTTTGTCATAGCGTAGACTTTTATATCAGTTATTATTTGTAGTTTTAATAGACGAGATGACACATTGATCATAGAGCCAATTCCCTTTATTTCATCCTTGAATATTATAGTCCCCGATCCAACATATGGCCTAGGCTTATGATGAAACAAGGGAACAATTCTTGGTTTAAAATTTTCATTAACAAAATATACGAACGTGGTCTTATAACTCATGAGGAAAAAAAAGGTTGCTG

mRNA sequence

AAAAAAATAGTGAAATTATCTTTTGAAAAATGGGTTTTGAGATATTTGGGGGCAATTTTCCGTAGAAAAATTGGGAATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAAATATATACACATTGTAGTTCCTTGTCGAAGTTTGTCATAGCGTAGACTTTTATATCAGTTATTATTTGTAGTTTTAATAGACGAGATGACACATTGATCATAGAGCCAATTCCCTTTATTTCATCCTTGAATATTATAGTCCCCGATCCAACATATGGCCTAGGCTTATGATGAAACAAGGGAACAATTCTTGGTTTAAAATTTTCATTAACAAAATATACGAACGTGGTCTTATAACTCATGAGGAAAAAAAAGGTTGCTG

Coding sequence (CDS)

ATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAA

Protein sequence

MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL

Homology

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BLAST of CsGy3G017420 vs. NCBI nr
Match: XP_004140747.2 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus] >KGN57423.1 hypothetical protein Csa_3G184050 [Cucumis sativus])

HSP 1 Score: 623.6 bits (1607), Expect = 3.9e-175
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK
Sbjct: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300
           LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 339
           XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 338

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BLAST of CsGy3G017420 vs. NCBI nr
Match: XP_008439301.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Cucumis melo])

HSP 1 Score: 595.1 bits (1533), Expect = 1.5e-166
Identity = 301/338 (89.05%), Postives = 309/338 (91.42%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           M IIFTSMTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MRIIFTSMTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           S+PRIFFHKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+K
Sbjct: 181 SMPRIFFHKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300
           LMKKYPPPKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEIT   
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSED 300

Query: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 339
                             DEHMWSKSNFEHDFMGLGQL
Sbjct: 301 SSLEDDEEIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 338

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BLAST of CsGy3G017420 vs. NCBI nr
Match: XP_016899030.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Cucumis melo])

HSP 1 Score: 564.7 bits (1454), Expect = 2.1e-157
Identity = 281/315 (89.21%), Postives = 289/315 (91.75%), Query Frame = 0


Query: 24  YRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKL 83
           +RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKL
Sbjct: 40  FRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKL 99

Query: 84  VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 143
           VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG
Sbjct: 100 VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 159

Query: 144 QGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKL 203
           QGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKL
Sbjct: 160 QGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKL 219

Query: 204 FEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIR 263
           FEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR
Sbjct: 220 FEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIR 279

Query: 264 AKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXXXXXXXXXXXXXXXXXXXXDEHMW 323
            KYLSENGNS NGLSE  KMEHSSTNS+DEAEIT                     DEHMW
Sbjct: 280 TKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMW 339

Query: 324 SKSNFEHDFMGLGQL 339
           SKSNFEHDFMGLGQL
Sbjct: 340 SKSNFEHDFMGLGQL 354

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BLAST of CsGy3G017420 vs. NCBI nr
Match: XP_022945794.1 (pentatricopeptide repeat-containing protein At4g21190 [Cucurbita moschata])

HSP 1 Score: 488.0 bits (1255), Expect = 2.5e-134
Identity = 277/332 (83.43%), Postives = 292/332 (87.95%), Query Frame = 0


Query: 8   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67
           M HSL  A+LSS LAS RM TL+Y+FPV SK IESV FS   SSSVVCAAKGPRPRYPRV
Sbjct: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRV 60

Query: 68  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127
           WKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE QR
Sbjct: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR 120

Query: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 187
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALA DGRLDEAEELWNKLFSQHLES+PRIFF
Sbjct: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAADGRLDEAEELWNKLFSQHLESMPRIFF 180

Query: 188 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 247
           HKMISLYY++ MHDKLFE+FADMEELGVQP+MAIVTK+GNVFQ+LGMLDKY+KL KKYPP
Sbjct: 181 HKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTKLGNVFQKLGMLDKYEKLKKKYPP 240

Query: 248 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXXXXXXXXX 307
           PKWEYRYI+GKRVKIRAK L ENG+SNNG  E  K EHSST  +      XXXXXXXXXX
Sbjct: 241 PKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEHSSTEELXXXXXXXXXXXXXXXX 300

Query: 308 XXXXXXXXXXXDEHMWSK-SNFEHDFMGLGQL 339
           XXXXXXXXXXX      K S FEHDFMG GQL
Sbjct: 301 XXXXXXXXXXXXXXXXXKESTFEHDFMGFGQL 332

[Close]

BLAST of CsGy3G017420 vs. NCBI nr
Match: XP_022140817.1 (pentatricopeptide repeat-containing protein At4g21190 [Momordica charantia])

HSP 1 Score: 483.4 bits (1243), Expect = 6.2e-133
Identity = 259/336 (77.08%), Postives = 282/336 (83.93%), Query Frame = 0


Query: 3   IIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRP 62
           ++ +SM HS  QA+LSS  AS RM TL+Y+FPV SKRIESV FSW  SS+VVCAAKGPRP
Sbjct: 8   LLRSSMAHSPVQASLSSSSASNRMRTLIYSFPVISKRIESVKFSWSASSTVVCAAKGPRP 67

Query: 63  RYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKT 122
           RYPRVWKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKT
Sbjct: 68  RYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKT 127

Query: 123 LENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESI 182
           LE QREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQ+LES+
Sbjct: 128 LEIQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQYLESM 187

Query: 183 PRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLM 242
           PR+FFHKMISLYYDQ MHDKLFEVFADMEELGVQPN  IVT +GNVFQELGM DKY+KL 
Sbjct: 188 PRMFFHKMISLYYDQGMHDKLFEVFADMEELGVQPNTEIVTMIGNVFQELGMFDKYEKLK 247

Query: 243 KKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXXXX 302
           KKYPP KWEYRY+KGKRV+IRAKYL+E GNSNNG SE  + + SS   ++EAE T     
Sbjct: 248 KKYPPLKWEYRYVKGKRVRIRAKYLNEYGNSNNGSSELDQKDDSSIKLLEEAE-TVSKDS 307

Query: 303 XXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 339
                    XXXXXXX         FE++FMG G+L
Sbjct: 308 SLEDEEMREXXXXXXXXXXXXXXXXFEYNFMGYGRL 342

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BLAST of CsGy3G017420 vs. TAIR10
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 365.9 bits (938), Expect = 2.6e-101
Identity = 180/256 (70.31%), Postives = 217/256 (84.77%), Query Frame = 0


Query: 26  MLTLVYTFP---VTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 85
           ML+L Y+ P   + ++   +  F+  P++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 86  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 145
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 146 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDK 205
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY + MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 206 LFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKI 265
           LFEVFADMEELGV+PN+AIV+ VG VF +L M DKY+KLMKKYPPP+WE+RYIKG+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 266 RAKYLSENGNSNNGLS 279
           +AK L+E      GLS
Sbjct: 241 KAKQLNELSEGEGGLS 256

[Close]

BLAST of CsGy3G017420 vs. TAIR10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 185.3 bits (469), Expect = 6.4e-47
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 67  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 126
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 127 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 186
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 187 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 246
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 247 PPKWEYRYIKGKRVKIRAKYLSEN 271
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

[Close]

BLAST of CsGy3G017420 vs. TAIR10
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4))

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-28
Identity = 68/185 (36.76%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 65  PRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE 124
           PR  +  + I    K   LV+ +  + + KE VYGALD+++AWE  FP+ ++K  + +LE
Sbjct: 131 PRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLE 190

Query: 125 NQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPR 184
            + +W R++Q+ KW+LSKGQG TMG+Y  L+ AL  D R +EA  +W K     L S+P 
Sbjct: 191 KEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPW 250

Query: 185 IFFHKMISLYYDQAMHDKLFEV---FADMEELGVQ-PNMAIVTKVGNVFQELGMLDKYKK 244
               +M+ +Y+   M  +L +V   F D+E    + P+  IV  V + ++ LGMLD+ ++
Sbjct: 251 QLCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKER 310

Query: 245 LMKKY 246
           ++ KY
Sbjct: 311 VVTKY 315

[Close]

BLAST of CsGy3G017420 vs. Swiss-Prot
Match: sp|Q8LG95|PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.7e-100
Identity = 180/256 (70.31%), Postives = 217/256 (84.77%), Query Frame = 0


Query: 26  MLTLVYTFP---VTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 85
           ML+L Y+ P   + ++   +  F+  P++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 86  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 145
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 146 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDK 205
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY + MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 206 LFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKI 265
           LFEVFADMEELGV+PN+AIV+ VG VF +L M DKY+KLMKKYPPP+WE+RYIKG+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 266 RAKYLSENGNSNNGLS 279
           +AK L+E      GLS
Sbjct: 241 KAKQLNELSEGEGGLS 256

[Close]

BLAST of CsGy3G017420 vs. Swiss-Prot
Match: sp|Q2V3H0|PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-45
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 67  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 126
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 127 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 186
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 187 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 246
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 247 PPKWEYRYIKGKRVKIRAKYLSEN 271
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

[Close]

BLAST of CsGy3G017420 vs. TrEMBL
Match: tr|A0A0A0L6Q9|A0A0A0L6Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 2.6e-175
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK
Sbjct: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300
           LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 339
           XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of CsGy3G017420 vs. TrEMBL
Match: tr|A0A1S3AY30|A0A1S3AY30_CUCME (pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 595.1 bits (1533), Expect = 9.7e-167
Identity = 301/338 (89.05%), Postives = 309/338 (91.42%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           M IIFTSMTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MRIIFTSMTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           S+PRIFFHKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+K
Sbjct: 181 SMPRIFFHKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300
           LMKKYPPPKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEIT   
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSED 300

Query: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 339
                             DEHMWSKSNFEHDFMGLGQL
Sbjct: 301 SSLEDDEEIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of CsGy3G017420 vs. TrEMBL
Match: tr|A0A1S4DTK8|A0A1S4DTK8_CUCME (pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 1.4e-157
Identity = 281/315 (89.21%), Postives = 289/315 (91.75%), Query Frame = 0


Query: 24  YRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKL 83
           +RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKL
Sbjct: 40  FRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKL 99

Query: 84  VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 143
           VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG
Sbjct: 100 VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 159

Query: 144 QGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKL 203
           QGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKL
Sbjct: 160 QGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKL 219

Query: 204 FEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIR 263
           FEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR
Sbjct: 220 FEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIR 279

Query: 264 AKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXXXXXXXXXXXXXXXXXXXXDEHMW 323
            KYLSENGNS NGLSE  KMEHSSTNS+DEAEIT                     DEHMW
Sbjct: 280 TKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMW 339

Query: 324 SKSNFEHDFMGLGQL 339
           SKSNFEHDFMGLGQL
Sbjct: 340 SKSNFEHDFMGLGQL 354

[Close]

BLAST of CsGy3G017420 vs. TrEMBL
Match: tr|A0A2I4G3X3|A0A2I4G3X3_9ROSI (pentatricopeptide repeat-containing protein At4g21190 OS=Juglans regia OX=51240 GN=LOC109004499 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.4e-109
Identity = 198/270 (73.33%), Postives = 230/270 (85.19%), Query Frame = 0


Query: 26  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 85
           MLTL Y+ P+  KR+ES+      S  VVCA+KGPRPRYPRVWKT+KRIGTISK++KL+D
Sbjct: 1   MLTLTYSLPIVIKRLESIKIPKSTSRVVVCASKGPRPRYPRVWKTRKRIGTISKSSKLID 60

Query: 86  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 145
           C+  LSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEN+ EWKRIIQ+TKWMLSKGQG
Sbjct: 61  CIMKLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEGEWKRIIQVTKWMLSKGQG 120

Query: 146 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 205
           RTMGSYFTLLNALAEDGRLDEAEELW KLF ++LES PRIFF KMIS+YY +AMH+K+FE
Sbjct: 121 RTMGSYFTLLNALAEDGRLDEAEELWTKLFKENLESTPRIFFDKMISIYYKRAMHEKMFE 180

Query: 206 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 265
           +FADMEELGV+PN++IV+ VGNVF+ELGM+DKY KL KKYPPPKWEY+YIKGKR+KI+AK
Sbjct: 181 IFADMEELGVRPNVSIVSMVGNVFKELGMMDKYNKLKKKYPPPKWEYQYIKGKRIKIKAK 240

Query: 266 YLSENGNSNNGLSEHAKMEHSSTNSIDEAE 296
           +L E   SN   S   K + +     +EAE
Sbjct: 241 HLDEYHVSNEEASRREKTDQTLNVMHEEAE 270

[Close]

BLAST of CsGy3G017420 vs. TrEMBL
Match: tr|M5X1I2|M5X1I2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G302200 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 4.2e-109
Identity = 200/262 (76.34%), Postives = 228/262 (87.02%), Query Frame = 0


Query: 26  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 85
           MLTL Y+ PV ++R+E +  S   SS V+CAAKGPRPRYPRVWK  KRIGTISK+ KLV+
Sbjct: 1   MLTLTYSLPVFTRRLEFIKISHSRSSVVLCAAKGPRPRYPRVWKANKRIGTISKSIKLVE 60

Query: 86  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 145
            +KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ+EWKRIIQ++KWMLSKGQG
Sbjct: 61  SIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQKEWKRIIQVSKWMLSKGQG 120

Query: 146 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 205
           RTMG+YFTLLNALAEDGR++EAEELW KLFSQ+LES+PR+FF KMIS+YY   +HDK+FE
Sbjct: 121 RTMGTYFTLLNALAEDGRVEEAEELWTKLFSQYLESMPRMFFDKMISIYYRHGIHDKMFE 180

Query: 206 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 265
           +FADMEELGVQPN++IVTKVGNVFQELGMLDKY KL +KYPPPKWEYRYIKGKRVKIRA 
Sbjct: 181 IFADMEELGVQPNVSIVTKVGNVFQELGMLDKYHKLKQKYPPPKWEYRYIKGKRVKIRAN 240

Query: 266 YLSENGNSNNGLSEHAKMEHSS 288
           Y  EN  +    S+  +  HSS
Sbjct: 241 Y--ENDGAEKMPSQEKETVHSS 260

The following BLAST results are available for this feature:

BLAST of CsGy3G017420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140747.2	3.9e-175	100.00	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativu...	[more]
XP_008439301.1	1.5e-166	89.05	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Cuc...	[more]
XP_016899030.1	2.1e-157	89.21	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Cuc...	[more]
XP_022945794.1	2.5e-134	83.43	pentatricopeptide repeat-containing protein At4g21190 [Cucurbita moschata]	[more]
XP_022140817.1	6.2e-133	77.08	pentatricopeptide repeat-containing protein At4g21190 [Momordica charantia]	[more]

BLAST of CsGy3G017420 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21190.1	2.6e-101	70.31	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.1	6.4e-47	47.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G04590.2	1.7e-28	36.76	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]

BLAST of CsGy3G017420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LG95\|PP332_ARATH	4.7e-100	70.31	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]
sp\|Q2V3H0\|PP322_ARATH	1.1e-45	47.06	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]

BLAST of CsGy3G017420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6Q9\|A0A0A0L6Q9_CUCSA	2.6e-175	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1	[more]
tr\|A0A1S3AY30\|A0A1S3AY30_CUCME	9.7e-167	89.05	pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo...	[more]
tr\|A0A1S4DTK8\|A0A1S4DTK8_CUCME	1.4e-157	89.21	pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A2I4G3X3\|A0A2I4G3X3_9ROSI	2.4e-109	73.33	pentatricopeptide repeat-containing protein At4g21190 OS=Juglans regia OX=51240 ...	[more]
tr\|M5X1I2\|M5X1I2_PRUPE	4.2e-109	76.34	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G302200 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
biological_process	GO:0008150	biological_process
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G017420.1	CsGy3G017420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 73..310 e-value: 4.0E-16 score: 61.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..317
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 27..322
None	No IPR available	PANTHER	PTHR24015:SF964	SUBFAMILY NOT NAMED	coord: 27..322
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 183..217 score: 8.144
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 147..181 score: 8.977

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G017420	Cla006138	Watermelon (97103) v1	cgybwmB217
CsGy3G017420	Csa3G184050	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G017420	MELO3C006950	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G017420	ClCG05G008480	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G017420	CSPI03G17370	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G017420	CmaCh18G012760	Cucurbita maxima (Rimu)	cgybcmaB352
CsGy3G017420	CmoCh18G013070	Cucurbita moschata (Rifu)	cgybcmoB324
CsGy3G017420	Lsi05G011840	Bottle gourd (USVL1VR-Ls)	cgyblsiB197
CsGy3G017420	Cp4.1LG09g00580	Cucurbita pepo (Zucchini)	cgybcpeB287
CsGy3G017420	MELO3C006950.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G017420	CsaV3_3G017570	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G017420	Cla97C05G090590	Watermelon (97103) v2	cgybwmbB196
CsGy3G017420	Carg22138	Silver-seed gourd	carcgybB0733

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G017420	Cucurbita maxima (Rimu)	cgybcmaB342
CsGy3G017420	Cucurbita moschata (Rifu)	cgybcmoB312
CsGy3G017420	Cucurbita pepo (Zucchini)	cgybcpeB327
CsGy3G017420	Melon (DHL92) v3.5.1	cgybmeB217
CsGy3G017420	Melon (DHL92) v3.6.1	cgybmedB220
CsGy3G017420	Silver-seed gourd	carcgybB0976
CsGy3G017420	Wax gourd	cgybwgoB268