Carg22138 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22138
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein
Location	Cucurbita_argyrosperma_scaffold_229 : 250558 .. 253287 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGACAATATCGACTAAGGATGAAAAGAAGAAATATGGGAAATTGAAGACATTCTTACACATTTCTTCAATGGCGCACTCTCTTGTTCCAGCATCGCTCTCGTCCGCCTTGGCTTCCAACCGGTAAAATTCTGCCTTTCTCGCTCTCTCTTCGTCTCAATGTATGTGTTTGGTTACTGAGAAAGTTACAGAAACAAAACGAGAAAGTTGTTGCCAGTGACGAAGTGTGTTTTGCGTAAGATGATGAAATTAGAAGTCCGATTGAATATAAACGAACTACTTTTTCTTCCTTAATGTCGAATTGGATTTCGATTTGTTGAAATCTATTGATATTTGTTTTCCTTTGCTGCACAGGATGCATACTTTGATTTACTCTTTCCCAGTCATATCCAAAGGCATTGAATCTGTTAAATTTTCGTTGATTGCAAGCAGTTCAGTGGTAAGCCTTCTCATCAATTGGTTTGCTGCTAGCGAGAATCAAACTAGCCTGTTCATTTCGATTGTGGAGAAGAAATTTCTGATCAGTGGAAACTGGATATATGTATTATGAGTTGAAGCAAATCCTGACCTTCTCTTTCCCTTCTTACACAAGTATTTCGATTTATTTGCAGGTATGCGCTGCAAAAGGTCCACGGCCGAGATATCCTCGGGTCTGGAAAACCAGGAAGAGGATTGGGACCATATCCAAGGCAGCAAAGCTCGTTGATTGTGTAAGCTCTCTTAAGCTCTTGTCTCACAAGAAGCGTAATTTTGCATATTCAATTTGGAATTTCATAGCAGAAGATATTTTATTTCAGCTTGATTCAGAGTGAATTTGGGATGCATTTTGAGACTTTTGGAAGATGCATTTGATGTACTTTTAGCATTCTTAACATTACTTTCGAAAACTTCATAAAAATTTTACATAGTGCTTTTAATTGACCAAAAGCATTTTTTCTTGTTTCATGGGATCATTTGGTATGTTTCTACTTTTGAACTCAAATTCATTTGCAGGATTGAGCAGTTAATTCGATATCCTTTTATAAGTATTTACTTTTCATTTTAGGTCAAGGGACTGTCTAACGTGAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACTGTAAAAAAGGCCCTGAAGACCTTAGAGATCCAAAGAGAATGGAAGAGGATAATTCAGGTACTTTTGTTTCGTGTTCTTTCTTGCTCTGCCCTCTTATCCCGAGAATGTCTCCGATCAAATGAGTTAAACAAGTTGGGTGTACTATTGTAGTTGACGAAATGGATGTTAAGTAAAGGCCAAGGAAGAACAATGGGTAGCTATTTCACATTATTAAATGCCTTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTATTTTCTCAGCATCTGGAGAGCATGCCTCGCATATTCTTCCATAAAATGATATCCCTTTACTATGAACGGGATATGCACGACAAGTTATTTGAGGTATTCAGTTTTCTCTTCTATTGCTTATTGTTACAGAAGCAGTTTCAACTGCTTGACTAACAAAGCTCTAAGCATTTATATTTTTAGCCACAAAACTCCAAGCAATTCTTCCTTCTCTCATTATAAGAAACTTGCATGTTACGATTATTTCATATGATTTTTACTTGAATCATGTTGAACTCCGTAGATACTGAAATTTGACTGTTGTTGCCCTTAGATATTTGCTGATATGGAGGAACTTGGAGTTCAACCAAGTATGGCGATTGTCACTATGCTTGGAAATGTCTTCCAAAAGTTGGGTATGTTAGATAAATATGAAAAATTGAAGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATAAGAGGAAAGCGTGTAAAAATACGAGCAAAGAATCTGCACGAAAATGGTAGTTCCAACAATGGTTCAGGTGAACTCGACAAAAAGGAGCATAGTTCAACAGAAGAACTGTTGGAGGAAGATGATATAACTTCCCAAGATTCGAGTCTTGAAGATGATGAAATGAGTGAAGACCCAGGTGAAGCCTTGGAAGATGAAAGTATGATGTTGAAAGAATCCACTTTTGAGCACGATTTCATGGGATTTGGACAATTGTAAGTTCAAGATATAGATAATGTATTCCCCATTTCAAGTTCGTCAAAATTCTCTCCCTTCTTTCTGTAATTTTGATCATACGGGATCACCAGTAGCATTGTGATCATAGAGCCAATTCCCTCAATATTATAATGCCCGACCTAAAATATATTTTTGTTATTGAGAGTAAATGAAAGAAAATGAAAATTTTCTTAATAAGTCGTAGAAGTCAATTTCATCATCTGAGTGTGAGATAGCTGAATGTGGTGAACTAATTGCCTTCAAAAAAGGATAATAAATATGGATCCGAAACTCGTGCATATTCTGTATTAAAGTCAATCTCATTACCGTAAAACTTCTAAAGTGGTATATAGAGAACAAAATTCTAATGCACTATCATGTGGTAGGGCAGGGAGGGGAAAGGGGTTTGGGTTGTTGTCTCACTAAAAGAAAACAGAATTGTTTTTCATTCATCATCAGAACCAGAGCCTTCTGAACTTGAACTCTGCTGTTTATGTGCTTTTCCATTGGCAACAGGGCCCTTCTTTTTCACATTTTGTTCATCAGCTTCGTCTTCGCTGTACTCGCTCTCGTAATCATCATATTCTTCTTCGTCATTTTCCTCTTCCTCTTCAATT

mRNA sequence

AGGACAATATCGACTAAGGATGAAAAGAAGAAATATGGGAAATTGAAGACATTCTTACACATTTCTTCAATGGCGCACTCTCTTGTTCCAGCATCGCTCTCGTCCGCCTTGGCTTCCAACCGGATGCATACTTTGATTTACTCTTTCCCAGTCATATCCAAAGGCATTGAATCTGTTAAATTTTCGTTGATTGCAAGCAGTTCAGTGGTATGCGCTGCAAAAGGTCCACGGCCGAGATATCCTCGGGTCTGGAAAACCAGGAAGAGGATTGGGACCATATCCAAGGCAGCAAAGCTCGTTGATTGTGTCAAGGGACTGTCTAACGTGAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACTGTAAAAAAGGCCCTGAAGACCTTAGAGATCCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGTTAAGTAAAGGCCAAGGAAGAACAATGGGTAGCTATTTCACATTATTAAATGCCTTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTATTTTCTCAGCATCTGGAGAGCATGCCTCGCATATTCTTCCATAAAATGATATCCCTTTACTATGAACGGGATATGCACGACAAGTTATTTGAGATATTTGCTGATATGGAGGAACTTGGAGTTCAACCAAGTATGGCGATTGTCACTATGCTTGGAAATGTCTTCCAAAAGTTGGGTATGTTAGATAAATATGAAAAATTGAAGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATAAGAGGAAAGCGTGTAAAAATACGAGCAAAGAATCTGCACGAAAATGGTAGTTCCAACAATGGTTCAGGTGAACTCGACAAAAAGGAGCATAGTTCAACAGAAGAACTGTTGGAGGAAGATGATATAACTTCCCAAGATTCGAGTCTTGAAGATGATGAAATGAGTGAAGACCCAGGTGAAGCCTTGGAAGATGAAAGTATGATGTTGAAAGAATCCACTTTTGAGCACGATTTCATGGGATTTGGACAATTGTAAGTTCAAGATATAGATAATGTATTCCCCATTTCAAGTTCGTCAAAATTCTCTCCCTTCTTTCTGTAATTTTGATCATACGGGATCACCAGTAGCATTGTGATCATAGAGCCAATTCCCTCAATATTATAATGCCCGACCTAAAATATATTTTTGTTATTGAGAGTAAATGAAAGAAAATGAAAATTTTCTTAATAAGTCGTAGAAGTCAATTTCATCATCTGAGTGTGAGATAGCTGAATGTGGTGAACTAATTGCCTTCAAAAAAGGATAATAAATATGGATCCGAAACTCGTGCATATTCTGTATTAAAGTCAATCTCATTACCGTAAAACTTCTAAAGTGGTATATAGAGAACAAAATTCTAATGCACTATCATGTGGTAGGGCAGGGAGGGGAAAGGGGTTTGGGTTGTTGTCTCACTAAAAGAAAACAGAATTGTTTTTCATTCATCATCAGAACCAGAGCCTTCTGAACTTGAACTCTGCTGTTTATGTGCTTTTCCATTGGCAACAGGGCCCTTCTTTTTCACATTTTGTTCATCAGCTTCGTCTTCGCTGTACTCGCTCTCGTAATCATCATATTCTTCTTCGTCATTTTCCTCTTCCTCTTCAATT

Coding sequence (CDS)

ATGGCGCACTCTCTTGTTCCAGCATCGCTCTCGTCCGCCTTGGCTTCCAACCGGATGCATACTTTGATTTACTCTTTCCCAGTCATATCCAAAGGCATTGAATCTGTTAAATTTTCGTTGATTGCAAGCAGTTCAGTGGTATGCGCTGCAAAAGGTCCACGGCCGAGATATCCTCGGGTCTGGAAAACCAGGAAGAGGATTGGGACCATATCCAAGGCAGCAAAGCTCGTTGATTGTGTCAAGGGACTGTCTAACGTGAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACTGTAAAAAAGGCCCTGAAGACCTTAGAGATCCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGTTAAGTAAAGGCCAAGGAAGAACAATGGGTAGCTATTTCACATTATTAAATGCCTTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTATTTTCTCAGCATCTGGAGAGCATGCCTCGCATATTCTTCCATAAAATGATATCCCTTTACTATGAACGGGATATGCACGACAAGTTATTTGAGATATTTGCTGATATGGAGGAACTTGGAGTTCAACCAAGTATGGCGATTGTCACTATGCTTGGAAATGTCTTCCAAAAGTTGGGTATGTTAGATAAATATGAAAAATTGAAGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATAAGAGGAAAGCGTGTAAAAATACGAGCAAAGAATCTGCACGAAAATGGTAGTTCCAACAATGGTTCAGGTGAACTCGACAAAAAGGAGCATAGTTCAACAGAAGAACTGTTGGAGGAAGATGATATAACTTCCCAAGATTCGAGTCTTGAAGATGATGAAATGAGTGAAGACCCAGGTGAAGCCTTGGAAGATGAAAGTATGATGTTGAAAGAATCCACTTTTGAGCACGATTTCATGGGATTTGGACAATTGTAA

Protein sequence

MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFFHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPPPKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEHSSTEELLEEDDITSQDSSLEDDEMSEDPGEALEDESMMLKESTFEHDFMGFGQL

Homology

[Close]

BLAST of Carg22138 vs. NCBI nr
Match: XP_022945794.1 (pentatricopeptide repeat-containing protein At4g21190 [Cucurbita moschata])

HSP 1 Score: 557.4 bits (1435), Expect = 3.3e-155
Identity = 312/332 (93.98%), Postives = 312/332 (93.98%), Query Frame = 0


Query: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRV 60
           MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRV
Sbjct: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRV 60

Query: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR 120
           WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR
Sbjct: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR 120

Query: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFF 180
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALA DGRLDEAEELWNKLFSQHLESMPRIFF
Sbjct: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAADGRLDEAEELWNKLFSQHLESMPRIFF 180

Query: 181 HKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPP 240
           HKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVT LGNVFQKLGMLDKYEKLKKKYPP
Sbjct: 181 HKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTKLGNVFQKLGMLDKYEKLKKKYPP 240

Query: 241 PKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEXXXXXXXXXXXXXXXXXXXXXXX 300
           PKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKE       XXXXXXXXXXXXXXXX
Sbjct: 241 PKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEHSSTEELXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXGEALEDESMMLKESTFEHDFMGFGQL 333
           XXXXXX           KESTFEHDFMGFGQL
Sbjct: 301 XXXXXXXXXXXXXXXXXKESTFEHDFMGFGQL 332

[Close]

BLAST of Carg22138 vs. NCBI nr
Match: XP_023541679.1 (pentatricopeptide repeat-containing protein At4g21190 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 556.2 bits (1432), Expect = 7.4e-155
Identity = 312/334 (93.41%), Postives = 313/334 (93.71%), Query Frame = 0


Query: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLI--ASSSVVCAAKGPRPRYP 60
           MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLI  ASSSVVCAAKGPRPRYP
Sbjct: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASASSSVVCAAKGPRPRYP 60

Query: 61  RVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEI 120
           RVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEI
Sbjct: 61  RVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEI 120

Query: 121 QREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRI 180
           QREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRI
Sbjct: 121 QREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRI 180

Query: 181 FFHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKY 240
           FFHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKY
Sbjct: 181 FFHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKY 240

Query: 241 PPPKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEXXXXXXXXXXXXXXXXXXXXX 300
           PPPKWEYRYIRGKRVKIRAKNLHENGSSNNGSG+ DKKE        XXXXXXXXXXXXX
Sbjct: 241 PPPKWEYRYIRGKRVKIRAKNLHENGSSNNGSGDFDKKEHSSTEELLXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXGEALEDESMMLKESTFEHDFMGFGQL 333
           XXXXXXXX          LKESTFEHDFMGFGQL
Sbjct: 301 XXXXXXXXXXXXXXXXXXLKESTFEHDFMGFGQL 334

[Close]

BLAST of Carg22138 vs. NCBI nr
Match: XP_022968275.1 (pentatricopeptide repeat-containing protein At4g21190 [Cucurbita maxima])

HSP 1 Score: 544.7 bits (1402), Expect = 2.2e-151
Identity = 316/334 (94.61%), Postives = 317/334 (94.91%), Query Frame = 0


Query: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIAS--SSVVCAAKGPRPRYP 60
           MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIAS  SSVVCAAKGPRPRYP
Sbjct: 32  MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASARSSVVCAAKGPRPRYP 91

Query: 61  RVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEI 120
           RVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEI
Sbjct: 92  RVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEI 151

Query: 121 QREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRI 180
           QREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRI
Sbjct: 152 QREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRI 211

Query: 181 FFHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKY 240
           FFHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLG+VFQKLGMLDK EKLKKKY
Sbjct: 212 FFHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGDVFQKLGMLDKCEKLKKKY 271

Query: 241 PPPKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEXXXXXXXXXXXXXXXXXXXXX 300
           PPPKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDK  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 272 PPPKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKXXXXXXXXXXXXXXXXXXXXXXX 331

Query: 301 XXXXXXXXGEALEDESMMLKESTFEHDFMGFGQL 333
           XXXXXXXX            ESTFEHDFMGFGQL
Sbjct: 332 XXXXXXXXXXXXXXXXXXXXESTFEHDFMGFGQL 365

[Close]

BLAST of Carg22138 vs. NCBI nr
Match: XP_022140817.1 (pentatricopeptide repeat-containing protein At4g21190 [Momordica charantia])

HSP 1 Score: 485.0 bits (1247), Expect = 2.1e-133
Identity = 257/344 (74.71%), Postives = 279/344 (81.10%), Query Frame = 0


Query: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRV 60
           MAHS V ASLSS+ ASNRM TLIYSFPVISK IESVKFS  ASS+VVCAAKGPRPRYPRV
Sbjct: 13  MAHSPVQASLSSSSASNRMRTLIYSFPVISKRIESVKFSWSASSTVVCAAKGPRPRYPRV 72

Query: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR 120
           WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR
Sbjct: 73  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR 132

Query: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFF 180
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQ+LESMPR+FF
Sbjct: 133 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQYLESMPRMFF 192

Query: 181 HKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPP 240
           HKMISLYY++ MHDKLFE+FADMEELGVQP+  IVTM+GNVFQ+LGM DKYEKLKKKYPP
Sbjct: 193 HKMISLYYDQGMHDKLFEVFADMEELGVQPNTEIVTMIGNVFQELGMFDKYEKLKKKYPP 252

Query: 241 PKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEXXXXXXXXXXXXXXXXXXXXXXX 300
            KWEYRY++GKRV+IRAK L+E G+SNNGS ELD+K+                       
Sbjct: 253 LKWEYRYVKGKRVRIRAKYLNEYGNSNNGSSELDQKD--------------DSSIKLLEE 312

Query: 301 XXXXXXGEALEDESM------------MLKESTFEHDFMGFGQL 333
                   +LEDE M                  FE++FMG+G+L
Sbjct: 313 AETVSKDSSLEDEEMREXXXXXXXXXXXXXXXXFEYNFMGYGRL 342

[Close]

BLAST of Carg22138 vs. NCBI nr
Match: XP_004140747.2 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus] >KGN57423.1 hypothetical protein Csa_3G184050 [Cucumis sativus])

HSP 1 Score: 483.8 bits (1244), Expect = 4.7e-133
Identity = 271/332 (81.63%), Postives = 285/332 (85.84%), Query Frame = 0


Query: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRV 60
           M HSL  A+LSS LAS RM TL+Y+FPV SK IESV FS   SSSVVCAAKGPRPRYPRV
Sbjct: 8   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67

Query: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR 120
           WKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE QR
Sbjct: 68  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127

Query: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFF 180
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLES+PRIFF
Sbjct: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 187

Query: 181 HKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPP 240
           HKMISLYY++ MHDKLFE+FADMEELGVQP+MAIVT +GNVFQ+LGMLDKY+KL KKYPP
Sbjct: 188 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 247

Query: 241 PKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEXXXXXXXXXXXXXXXXXXXXXXX 300
           PKWEYRYI+GKRVKIRAK L ENG+SNNG  E  K E             XXXXXXXXXX
Sbjct: 248 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXXXXXXXXX 307

Query: 301 XXXXXXGEALEDESMMLKESTFEHDFMGFGQL 333
           XXXXXX     DE M  K S FEHDFMG GQL
Sbjct: 308 XXXXXXXXXXXDEHMWSK-SNFEHDFMGLGQL 338

[Close]

BLAST of Carg22138 vs. TAIR10
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 361.7 bits (927), Expect = 4.9e-100
Identity = 181/261 (69.35%), Postives = 218/261 (83.52%), Query Frame = 0


Query: 19  MHTLIYSFPVI---SKGIESVKFSLIASSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAK 78
           M +L YS P +   ++   +  F+   ++ VVCAA+GPRPR PRVWKTRKRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 79  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQREWKRIIQLTKWMLSK 138
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE ++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 139 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFFHKMISLYYERDMHDK 198
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY+RDMH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 199 LFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPPPKWEYRYIRGKRVKI 258
           LFE+FADMEELGV+P++AIV+M+G VF KL M DKYEKL KKYPPP+WE+RYI+G+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 259 RAKNLHENGSSNNG-SGELDK 276
           +AK L+E      G S + DK
Sbjct: 241 KAKQLNELSEGEGGLSSDEDK 261

[Close]

BLAST of Carg22138 vs. TAIR10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 175.6 bits (444), Expect = 5.0e-44
Identity = 89/197 (45.18%), Postives = 124/197 (62.94%), Query Frame = 0


Query: 60  VWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQ 119
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 120 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIF 179
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  S+PR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 180 FHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYP 239
           F +MI+LY   D+HDK+ E+FADMEEL V P       +   F++L   +  + + ++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 240 PPKWEYRYIRGKRVKIR 257
             +++Y Y  G+RV+++
Sbjct: 265 LSEYKYIYFNGERVRVK 280

[Close]

BLAST of Carg22138 vs. TAIR10
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4))

HSP 1 Score: 122.5 bits (306), Expect = 5.0e-28
Identity = 67/185 (36.22%), Postives = 109/185 (58.92%), Query Frame = 0


Query: 58  PRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE 117
           PR  +  + I    K   LV+ +  + + KE VYGALD+++AWE  FP+ ++K  + +LE
Sbjct: 131 PRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLE 190

Query: 118 IQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPR 177
            + +W R++Q+ KW+LSKGQG TMG+Y  L+ AL  D R +EA  +W K     L S+P 
Sbjct: 191 KEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPW 250

Query: 178 IFFHKMISLYYERDMHD---KLFEIFADMEELGVQ-PSMAIVTMLGNVFQKLGMLDKYEK 237
               +M+ +Y+  +M     K+ ++F D+E    + P   IV  + + ++ LGMLD+ E+
Sbjct: 251 QLCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKER 310

Query: 238 LKKKY 239
           +  KY
Sbjct: 311 VVTKY 315

[Close]

BLAST of Carg22138 vs. Swiss-Prot
Match: sp|Q8LG95|PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 8.8e-99
Identity = 181/261 (69.35%), Postives = 218/261 (83.52%), Query Frame = 0


Query: 19  MHTLIYSFPVI---SKGIESVKFSLIASSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAK 78
           M +L YS P +   ++   +  F+   ++ VVCAA+GPRPR PRVWKTRKRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 79  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQREWKRIIQLTKWMLSK 138
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE ++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 139 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFFHKMISLYYERDMHDK 198
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY+RDMH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 199 LFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPPPKWEYRYIRGKRVKI 258
           LFE+FADMEELGV+P++AIV+M+G VF KL M DKYEKL KKYPPP+WE+RYI+G+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 259 RAKNLHENGSSNNG-SGELDK 276
           +AK L+E      G S + DK
Sbjct: 241 KAKQLNELSEGEGGLSSDEDK 261

[Close]

BLAST of Carg22138 vs. Swiss-Prot
Match: sp|Q2V3H0|PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 175.6 bits (444), Expect = 8.9e-43
Identity = 89/197 (45.18%), Postives = 124/197 (62.94%), Query Frame = 0


Query: 60  VWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQ 119
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 120 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIF 179
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  S+PR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 180 FHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYP 239
           F +MI+LY   D+HDK+ E+FADMEEL V P       +   F++L   +  + + ++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 240 PPKWEYRYIRGKRVKIR 257
             +++Y Y  G+RV+++
Sbjct: 265 LSEYKYIYFNGERVRVK 280

[Close]

BLAST of Carg22138 vs. TrEMBL
Match: tr|A0A0A0L6Q9|A0A0A0L6Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 3.1e-133
Identity = 271/332 (81.63%), Postives = 285/332 (85.84%), Query Frame = 0


Query: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRV 60
           M HSL  A+LSS LAS RM TL+Y+FPV SK IESV FS   SSSVVCAAKGPRPRYPRV
Sbjct: 8   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67

Query: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR 120
           WKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE QR
Sbjct: 68  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127

Query: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFF 180
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLES+PRIFF
Sbjct: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 187

Query: 181 HKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPP 240
           HKMISLYY++ MHDKLFE+FADMEELGVQP+MAIVT +GNVFQ+LGMLDKY+KL KKYPP
Sbjct: 188 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 247

Query: 241 PKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEXXXXXXXXXXXXXXXXXXXXXXX 300
           PKWEYRYI+GKRVKIRAK L ENG+SNNG  E  K E             XXXXXXXXXX
Sbjct: 248 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXXXXXXXXX 307

Query: 301 XXXXXXGEALEDESMMLKESTFEHDFMGFGQL 333
           XXXXXX     DE M  K S FEHDFMG GQL
Sbjct: 308 XXXXXXXXXXXDEHMWSK-SNFEHDFMGLGQL 338

[Close]

BLAST of Carg22138 vs. TrEMBL
Match: tr|A0A1S3AY30|A0A1S3AY30_CUCME (pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 5.3e-133
Identity = 254/332 (76.51%), Postives = 268/332 (80.72%), Query Frame = 0


Query: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRV 60
           M H L  A+L+S  AS RM TL+Y+FPV SK IESV FS   SSSVVCAAKGPRPRYPRV
Sbjct: 8   MTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67

Query: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR 120
           WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE QR
Sbjct: 68  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127

Query: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFF 180
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LESMPRIFF
Sbjct: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFF 187

Query: 181 HKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPP 240
           HKMISLYY+R MHDKLFE+FADMEELGVQP+MAIVT +GN+FQ+LGMLDKYEKL KKYPP
Sbjct: 188 HKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPP 247

Query: 241 PKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEXXXXXXXXXXXXXXXXXXXXXXX 300
           PKWEYRYI+GKRVKIR K L ENG+S NG  E +K E                       
Sbjct: 248 PKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDE 307

Query: 301 XXXXXXGEALEDESMMLKESTFEHDFMGFGQL 333
                  E LEDE M  K S FEHDFMG GQL
Sbjct: 308 EIGKDPDEILEDEHMWSK-SNFEHDFMGLGQL 338

[Close]

BLAST of Carg22138 vs. TrEMBL
Match: tr|A0A1S4DTK8|A0A1S4DTK8_CUCME (pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 5.5e-130
Identity = 246/315 (78.10%), Postives = 258/315 (81.90%), Query Frame = 0


Query: 18  RMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLV 77
           RM TL+Y+FPV SK IESV FS   SSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLV
Sbjct: 41  RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLV 100

Query: 78  DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQREWKRIIQLTKWMLSKGQ 137
           DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE QREWKRIIQLTKWMLSKGQ
Sbjct: 101 DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 160

Query: 138 GRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFFHKMISLYYERDMHDKLF 197
           GRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LESMPRIFFHKMISLYY+R MHDKLF
Sbjct: 161 GRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLF 220

Query: 198 EIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPPPKWEYRYIRGKRVKIRA 257
           E+FADMEELGVQP+MAIVT +GN+FQ+LGMLDKYEKL KKYPPPKWEYRYI+GKRVKIR 
Sbjct: 221 EVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRT 280

Query: 258 KNLHENGSSNNGSGELDKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEALEDESMML 317
           K L ENG+S NG  E +K E                              E LEDE M  
Sbjct: 281 KYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWS 340

Query: 318 KESTFEHDFMGFGQL 333
           K S FEHDFMG GQL
Sbjct: 341 K-SNFEHDFMGLGQL 354

[Close]

BLAST of Carg22138 vs. TrEMBL
Match: tr|A0A2I4G3X3|A0A2I4G3X3_9ROSI (pentatricopeptide repeat-containing protein At4g21190 OS=Juglans regia OX=51240 GN=LOC109004499 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 6.5e-107
Identity = 193/259 (74.52%), Postives = 227/259 (87.64%), Query Frame = 0


Query: 19  MHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVD 78
           M TL YS P++ K +ES+K     S  VVCA+KGPRPRYPRVWKTRKRIGTISK++KL+D
Sbjct: 1   MLTLTYSLPIVIKRLESIKIPKSTSRVVVCASKGPRPRYPRVWKTRKRIGTISKSSKLID 60

Query: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQREWKRIIQLTKWMLSKGQG 138
           C+  LSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE + EWKRIIQ+TKWMLSKGQG
Sbjct: 61  CIMKLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEGEWKRIIQVTKWMLSKGQG 120

Query: 139 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFFHKMISLYYERDMHDKLFE 198
           RTMGSYFTLLNALAEDGRLDEAEELW KLF ++LES PRIFF KMIS+YY+R MH+K+FE
Sbjct: 121 RTMGSYFTLLNALAEDGRLDEAEELWTKLFKENLESTPRIFFDKMISIYYKRAMHEKMFE 180

Query: 199 IFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPPPKWEYRYIRGKRVKIRAK 258
           IFADMEELGV+P+++IV+M+GNVF++LGM+DKY KLKKKYPPPKWEY+YI+GKR+KI+AK
Sbjct: 181 IFADMEELGVRPNVSIVSMVGNVFKELGMMDKYNKLKKKYPPPKWEYQYIKGKRIKIKAK 240

Query: 259 NLHENGSSNNGSGELDKKE 278
           +L E   SN  +   +K +
Sbjct: 241 HLDEYHVSNEEASRREKTD 259

[Close]

BLAST of Carg22138 vs. TrEMBL
Match: tr|A0A2H5P0L6|A0A2H5P0L6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_090870 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 4.2e-106
Identity = 194/252 (76.98%), Postives = 219/252 (86.90%), Query Frame = 0


Query: 18  RMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLV 77
           RM +L YS P  +K  E +K S  A S VVCAA+GPRPRYPRVWK RKRIGTISK+AKLV
Sbjct: 16  RMLSLSYSLPPFTKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLV 75

Query: 78  DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQREWKRIIQLTKWMLSKGQ 137
            C+KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE +++WKRIIQ+TKWMLSKGQ
Sbjct: 76  TCIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQ 135

Query: 138 GRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFFHKMISLYYERDMHDKLF 197
           GRTMG+YF LLNALAEDGRLDEAEELW K+F  HLE  PRIFF KMIS+YY R MH+K+F
Sbjct: 136 GRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMF 195

Query: 198 EIFADMEELGVQPSMAIVTMLGNVFQKLGMLDKYEKLKKKYPPPKWEYRYIRGKRVKIRA 257
           EIFADMEELGV+P+++IV+M+GN FQKLGMLDKYEKLKKKYPPPKWEYRYI+GKRV+I A
Sbjct: 196 EIFADMEELGVRPNVSIVSMMGNAFQKLGMLDKYEKLKKKYPPPKWEYRYIKGKRVRIPA 255

Query: 258 KNLHENGSSNNG 270
           K  +E  S+  G
Sbjct: 256 KPKYELDSATEG 267

The following BLAST results are available for this feature:

BLAST of Carg22138 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945794.1	3.3e-155	93.98	pentatricopeptide repeat-containing protein At4g21190 [Cucurbita moschata]	[more]
XP_023541679.1	7.4e-155	93.41	pentatricopeptide repeat-containing protein At4g21190 [Cucurbita pepo subsp. pep...	[more]
XP_022968275.1	2.2e-151	94.61	pentatricopeptide repeat-containing protein At4g21190 [Cucurbita maxima]	[more]
XP_022140817.1	2.1e-133	74.71	pentatricopeptide repeat-containing protein At4g21190 [Momordica charantia]	[more]
XP_004140747.2	4.7e-133	81.63	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativu...	[more]

BLAST of Carg22138 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21190.1	4.9e-100	69.35	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.1	5.0e-44	45.18	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G04590.2	5.0e-28	36.22	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]

BLAST of Carg22138 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LG95\|PP332_ARATH	8.8e-99	69.35	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]
sp\|Q2V3H0\|PP322_ARATH	8.9e-43	45.18	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]

BLAST of Carg22138 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6Q9\|A0A0A0L6Q9_CUCSA	3.1e-133	81.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1	[more]
tr\|A0A1S3AY30\|A0A1S3AY30_CUCME	5.3e-133	76.51	pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo...	[more]
tr\|A0A1S4DTK8\|A0A1S4DTK8_CUCME	5.5e-130	78.10	pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A2I4G3X3\|A0A2I4G3X3_9ROSI	6.5e-107	74.52	pentatricopeptide repeat-containing protein At4g21190 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2H5P0L6\|A0A2H5P0L6_CITUN	4.2e-106	76.98	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_090870 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22138-RA	Carg22138-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 146..167 e-value: 0.02 score: 15.0 coord: 183..208 e-value: 0.47 score: 10.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 176..210 score: 8.243
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 140..174 score: 8.977
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 68..303 e-value: 4.1E-16 score: 61.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..310
None	No IPR available	PANTHER	PTHR24015:SF964	SUBFAMILY NOT NAMED	coord: 22..301
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 22..301

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22138	Cla006138	Watermelon (97103) v1	carwmB0736
Carg22138	Csa3G184050	Cucumber (Chinese Long) v2	carcuB0754
Carg22138	MELO3C006950	Melon (DHL92) v3.5.1	carmeB0732
Carg22138	ClCG05G008480	Watermelon (Charleston Gray)	carwcgB0715
Carg22138	CSPI03G17370	Wild cucumber (PI 183967)	carcpiB0771
Carg22138	Cucsa.108230	Cucumber (Gy14) v1	carcgyB0828
Carg22138	CmaCh18G012760	Cucurbita maxima (Rimu)	carcmaB1032
Carg22138	CmoCh18G013070	Cucurbita moschata (Rifu)	carcmoB1003
Carg22138	Lsi05G011840	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22138	Cp4.1LG09g00580	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22138	CsGy3G017420	Cucumber (Gy14) v2	carcgybB0733
Carg22138	MELO3C006950.2	Melon (DHL92) v3.6.1	carmedB0743
Carg22138	CsaV3_3G017570	Cucumber (Chinese Long) v3	carcucB0774
Carg22138	Cla97C05G090590	Watermelon (97103) v2	carwmbB0772

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22138	Melon (DHL92) v3.5.1	carmeB0734
Carg22138	Melon (DHL92) v3.6.1	carmedB0745
Carg22138	Wax gourd	carwgoB0870
Carg22138	Silver-seed gourd	carcarB583
Carg22138	Silver-seed gourd	carcarB594
Carg22138	Cucurbita maxima (Rimu)	carcmaB1031
Carg22138	Cucurbita moschata (Rifu)	carcmoB1002
Carg22138	Cucurbita pepo (Zucchini)	carcpeB1039