Cucsa.108230 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.108230
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold00931 : 421186 .. 423594 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGTAAGCTCTCCCTTTCTCCTTATCTCTATTTCTCTCAACTTTCGTGCTTGGTTACTGAGAAAAATTCAAAAAGAAAACGAGAAATTTGTTCTTATATACGAAGTATGCTTTGTGTGGACGATGAAATTTATTCATTTCCTTGAATAGCGATTTCGTGTTTTGCCTGGTTCCTCCTAGAGCTGGAAATTTTGATTTAAATTCGTTGAAATCTATTGACATTTGATCTCATTTGCTGGTTCAGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTAAGTCTTCTCGTCAGTTACTTCGCTGCTAGCGATGATAAACGGAAATTGGGTTTAATTTTTACGCAATTCCTGAAATTTTCTTTCACTTCTTACCCAAGAGTTATTTTGTAGGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAaGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAGCTCTCTTGTTCCTGTCTCACCAATCCTATATATCCTCCATCCATAAGTAGGGTGACATGATGCCTATTCAAATTGGATTTTCATAGTAGAAAATCTTTTCTTTCATCTTCATTGGGGGTATATTTGGGATGCATTTTCAGACTTTTGGAATTATTTTTGACAGCATAACCAAACATCAAGCAAATTTTAAATAGTACTTTTGATTTCCAACATAAATTTTCACCATATTTAAATTCAACACCAAAGTCACCCTTAATGTAATGCAGTCTCTTTTTATTTGTTATATGATGTAACTCTAAATTTACCTTCATTCATGAGCTTGAGCTTTTGGTTTCAATGGGTGATTTAACATGGTATCTAAGTGGATGGTCTAGGTGATCCTCTATTCAAATCCATGCAACATTAGTTCCTTTTCAATCAATATGTTAGTTCCTTTTCAATTAATATTGATTTTCACTTGTTCGATAGTCTATATATTTCAAGCCACAAGTGAGGGGAGTGTTAGATGGAAAATTCAATGATCTAACATTGCTTCTTGTTGCTACTTTTGAACTTGTTAACTTCTGGGTCGACCTTTTTAAGTACTGACTTCGCATTTTAGGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGGTACATTCTTACATGTTTCTTTCATGTCCATTCTTGCTCTGCCCTTTTGTCCTGAGGATGTTGCTGACGAAATGAGTTAAGCAAAATGAGTATACTATTGTAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTCGTTTTATTGCTACAGAAGTAGTTTCAACTGCATTGGTCACAAATCTCTAACCATTCCTTCCACTCCATATTGATTAAAAAaGGGATAAAAGTTATGATACATGGTGCCGATATATCATTTTTAGTTCAATCATATTGAGTTCCATGGGTAACGAAATTTAACTATGATTGACTTAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAAATATATACACATTGTAGTTCCTTGTCGAAGTTTGTCATAGCGTAGACTTTTATATCAGTTATTATTTGTAGTTTTAATAGACGAGATGACACATTGATCATAGAGCCAATTCCCTTTATTTCATCCTTGAATATTATAGTCCCCGA

mRNA sequence

TGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAAATATATACACATTGTAGTTCCTTGTCGAAGTTTGTCATAGCGTAGACTTTTATATCAGTTATTATTTGTAGTTTTAATAGACGAGATGACACATTGATCATAGAGCCAATTCCCTTTATTTCATCCTTGAATATTATAGTCCCCGA

Coding sequence (CDS)

ATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAaGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAA

Protein sequence

MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL*

Homology

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BLAST of Cucsa.108230 vs. Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 4.7e-105
Identity = 193/293 (65.87%), Postives = 236/293 (80.55%), Query Frame = 1


Query: 19  MLTLVYTFP---VTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 78
           ML+L Y+ P   + ++   +  F+  P++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 79  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 138
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 139 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDK 198
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY + MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 199 LFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKI 258
           LFEVFADMEELGV+PN+AIV+ VG VF +L M DKY+KLMKKYPPP+WE+RYIKG+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 259 RAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDE 309
           +AK L+E      GLS       S  + ID  EI SE+   ED ED+SE+ ++
Sbjct: 241 KAKQLNELSEGEGGLS-------SDEDKIDN-EIESEE---EDGEDLSEEEED 282

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BLAST of Cucsa.108230 vs. Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 189.5 bits (480), Expect = 5.9e-47
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 1


Query: 60  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 119
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 120 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 179
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 180 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 239
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 240 PPKWEYRYIKGKRVKIRAKYLSEN 264
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

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BLAST of Cucsa.108230 vs. TrEMBL
Match: A0A0A0L6Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G184050 PE=4 SV=1)

HSP 1 Score: 671.8 bits (1732), Expect = 4.3e-190
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1


Query: 1   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 60
           MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV
Sbjct: 8   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67

Query: 61  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 120
           WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR
Sbjct: 68  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127

Query: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 180
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF
Sbjct: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 187

Query: 181 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 240
           HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP
Sbjct: 188 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 247

Query: 241 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 300
           PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE
Sbjct: 248 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 307

Query: 301 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 332
           DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 308 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338

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BLAST of Cucsa.108230 vs. TrEMBL
Match: M5X1I2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009149mg PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 2.5e-113
Identity = 205/287 (71.43%), Postives = 237/287 (82.58%), Query Frame = 1


Query: 19  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 78
           MLTL Y+ PV ++R+E +  S   SS V+CAAKGPRPRYPRVWK  KRIGTISK+ KLV+
Sbjct: 1   MLTLTYSLPVFTRRLEFIKISHSRSSVVLCAAKGPRPRYPRVWKANKRIGTISKSIKLVE 60

Query: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138
            +KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ+EWKRIIQ++KWMLSKGQG
Sbjct: 61  SIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQKEWKRIIQVSKWMLSKGQG 120

Query: 139 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 198
           RTMG+YFTLLNALAEDGR++EAEELW KLFSQ+LES+PR+FF KMIS+YY   +HDK+FE
Sbjct: 121 RTMGTYFTLLNALAEDGRVEEAEELWTKLFSQYLESMPRMFFDKMISIYYRHGIHDKMFE 180

Query: 199 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 258
           +FADMEELGVQPN++IVTKVGNVFQELGMLDKY KL +KYPPPKWEYRYIKGKRVKIRA 
Sbjct: 181 IFADMEELGVQPNVSIVTKVGNVFQELGMLDKYHKLKQKYPPPKWEYRYIKGKRVKIRAN 240

Query: 259 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSED 306
           Y  EN  +    S+  +  HSS   +      +ED   E+ +  S D
Sbjct: 241 Y--ENDGAEKMPSQEKETVHSSEELLAAESNPNEDVVAEEGDQNSSD 285

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BLAST of Cucsa.108230 vs. TrEMBL
Match: E0CUT0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01450 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 5.8e-110
Identity = 200/297 (67.34%), Postives = 242/297 (81.48%), Query Frame = 1


Query: 19  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 78
           ML L Y+    ++R+++V     P S VVC AKGPRPRYPRVWKT++RIGTISK+AKLVD
Sbjct: 1   MLCLRYSPATITRRLDAVEIPKNPRSIVVCGAKGPRPRYPRVWKTRQRIGTISKSAKLVD 60

Query: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138
           C+KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE+Q+EWKRIIQ+TKWMLSKGQG
Sbjct: 61  CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQG 120

Query: 139 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 198
           RTMGSYFTLLNALAEDGRLDEAEELW KLFS++LES+PR+F+ KMIS+YY + MH+K+FE
Sbjct: 121 RTMGSYFTLLNALAEDGRLDEAEELWTKLFSENLESLPRVFYDKMISIYYRRDMHEKMFE 180

Query: 199 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 258
           +FADMEELG++PN +IV  VG+VFQ+LGMLDKY+KL KKYPPPKWEYRYIKGKRV+IRAK
Sbjct: 181 IFADMEELGIRPNTSIVKMVGDVFQKLGMLDKYEKLQKKYPPPKWEYRYIKGKRVRIRAK 240

Query: 259 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMS-EDPDEILEDEH 315
              E+ +     S+       + N I++   T   + + D+ D S +D DE + + H
Sbjct: 241 LTGESDDPGEAESDD---PGEAVNEINDK--TENSNEMHDEADSSVDDADEPIYEAH 292

[Close]

BLAST of Cucsa.108230 vs. TrEMBL
Match: A0A0D2MKB7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G069300 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 9.9e-110
Identity = 200/306 (65.36%), Postives = 243/306 (79.41%), Query Frame = 1


Query: 18  RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLV 77
           RML   Y  P+ +KR+ESV  +  P ++VVCAAKGPRPRYPRVWK++ RIGT+SK+AKLV
Sbjct: 24  RMLCCRYALPLVTKRLESVKINQRPRNTVVCAAKGPRPRYPRVWKSRNRIGTVSKSAKLV 83

Query: 78  DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 137
            CVK LSNVKEEVYGALDSFIAWELEFPLITVKKALK L+N++EWKRIIQ+ KWMLSKGQ
Sbjct: 84  TCVKQLSNVKEEVYGALDSFIAWELEFPLITVKKALKILQNEQEWKRIIQVIKWMLSKGQ 143

Query: 138 GRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLF 197
           GRTMG+YFTLLNALAEDGRL+EAEELW KLFS +LES PRIFF KMIS+YY + MH+K+F
Sbjct: 144 GRTMGTYFTLLNALAEDGRLEEAEELWVKLFSDNLESTPRIFFDKMISIYYHKDMHEKMF 203

Query: 198 EVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRA 257
           EVFADMEELGV+P++++V+ VGN FQ+LGMLDKY KL +KYPPPKWEYRYIKGKRVKI+ 
Sbjct: 204 EVFADMEELGVKPSISVVSMVGNTFQKLGMLDKYDKLKRKYPPPKWEYRYIKGKRVKIQV 263

Query: 258 KYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWS 317
           K L E      G++E  + E +S+   +EAE +S   +    ED   +     + E   +
Sbjct: 264 KQLQEFDKKAKGVTEDKETEENSSLEHEEAEASSNKIAKGVTEDNETEWIMSFKHEEPEA 323

Query: 318 KSNFEH 324
           +SN+ H
Sbjct: 324 QSNYIH 329

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BLAST of Cucsa.108230 vs. TrEMBL
Match: A0A059DJN2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02720 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.7e-109
Identity = 200/295 (67.80%), Postives = 239/295 (81.02%), Query Frame = 1


Query: 19  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 78
           ML+  Y+ PV  +R ES   S    + VVC AKGPRPRYPRVWK++K+IGTISK+AKLVD
Sbjct: 1   MLSFKYSLPVIPRRFESSQISRNIRTIVVCGAKGPRPRYPRVWKSQKKIGTISKSAKLVD 60

Query: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEN++EWKRIIQ++KWMLSKGQG
Sbjct: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEKEWKRIIQVSKWMLSKGQG 120

Query: 139 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 198
           RTMGSYFTLLNALAEDGRLDEAEELW  +FSQ+LE  PR FF+K+IS+YY + MHDK+FE
Sbjct: 121 RTMGSYFTLLNALAEDGRLDEAEELWTTIFSQNLEGTPRKFFNKVISIYYKRGMHDKMFE 180

Query: 199 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 258
           VFADMEELGV+PN++IV+ VGNVFQ+LGM+DKY+KL KKYPP KWEYRYIKGKRVKI AK
Sbjct: 181 VFADMEELGVKPNVSIVSMVGNVFQQLGMMDKYEKLTKKYPPAKWEYRYIKGKRVKISAK 240

Query: 259 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDE 314
            L+E   +N   S +       T  ++E++   E ++ + DE +  D D + E +
Sbjct: 241 RLNEFNAANESSSVNGDEIIEETKQLNESDSPLEGNTTDADETI-PDTDGVYESD 294

[Close]

BLAST of Cucsa.108230 vs. TAIR10
Match: AT4G21190.1 (AT4G21190.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 382.5 bits (981), Expect = 2.7e-106
Identity = 193/293 (65.87%), Postives = 236/293 (80.55%), Query Frame = 1


Query: 19  MLTLVYTFP---VTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 78
           ML+L Y+ P   + ++   +  F+  P++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 79  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 138
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 139 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDK 198
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY + MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 199 LFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKI 258
           LFEVFADMEELGV+PN+AIV+ VG VF +L M DKY+KLMKKYPPP+WE+RYIKG+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 259 RAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDE 309
           +AK L+E      GLS       S  + ID  EI SE+   ED ED+SE+ ++
Sbjct: 241 KAKQLNELSEGEGGLS-------SDEDKIDN-EIESEE---EDGEDLSEEEED 282

[Close]

BLAST of Cucsa.108230 vs. TAIR10
Match: AT4G18975.1 (AT4G18975.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-48
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 1


Query: 60  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 119
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 120 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 179
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 180 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 239
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 240 PPKWEYRYIKGKRVKIRAKYLSEN 264
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

[Close]

BLAST of Cucsa.108230 vs. TAIR10
Match: AT1G04590.2 (AT1G04590.2 BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4))

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-29
Identity = 68/185 (36.76%), Postives = 110/185 (59.46%), Query Frame = 1


Query: 58  PRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE 117
           PR  +  + I    K   LV+ +  + + KE VYGALD+++AWE  FP+ ++K  + +LE
Sbjct: 131 PRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLE 190

Query: 118 NQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPR 177
            + +W R++Q+ KW+LSKGQG TMG+Y  L+ AL  D R +EA  +W K     L S+P 
Sbjct: 191 KEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPW 250

Query: 178 IFFHKMISLYYDQAMHDKLFEV---FADMEELGVQ-PNMAIVTKVGNVFQELGMLDKYKK 237
               +M+ +Y+   M  +L +V   F D+E    + P+  IV  V + ++ LGMLD+ ++
Sbjct: 251 QLCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKER 310

Query: 238 LMKKY 239
           ++ KY
Sbjct: 311 VVTKY 315

[Close]

BLAST of Cucsa.108230 vs. TAIR10
Match: AT4G36680.1 (AT4G36680.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 9.1e-06
Identity = 27/112 (24.11%), Postives = 61/112 (54.46%), Query Frame = 1


Query: 123 KRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHK 182
           ++ I++ + M  KG   T  ++ T+L++L + G L+ A+ LWN++  +  E     +  +
Sbjct: 191 EKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVR 250

Query: 183 MISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKL 235
           ++S   +    +++ E+  +M  +G++P+      +   + E GMLD+ KK+
Sbjct: 251 IMSAQKESP--ERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKV 300

[Close]

BLAST of Cucsa.108230 vs. NCBI nr
Match: gi|778679730|ref|XP_004140747.2| (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus])

HSP 1 Score: 671.8 bits (1732), Expect = 6.2e-190
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1


Query: 1   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 60
           MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV
Sbjct: 8   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67

Query: 61  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 120
           WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR
Sbjct: 68  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127

Query: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 180
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF
Sbjct: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 187

Query: 181 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 240
           HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP
Sbjct: 188 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 247

Query: 241 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 300
           PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE
Sbjct: 248 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 307

Query: 301 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 332
           DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 308 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of Cucsa.108230 vs. NCBI nr
Match: gi|659077628|ref|XP_008439301.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Cucumis melo])

HSP 1 Score: 639.4 bits (1648), Expect = 3.4e-180
Identity = 312/331 (94.26%), Postives = 323/331 (97.58%), Query Frame = 1


Query: 1   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 60
           MTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV
Sbjct: 8   MTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67

Query: 61  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 120
           WKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR
Sbjct: 68  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127

Query: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 180
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFF
Sbjct: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFF 187

Query: 181 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 240
           HKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPP
Sbjct: 188 HKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPP 247

Query: 241 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 300
           PKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE
Sbjct: 248 PKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDE 307

Query: 301 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 332
           ++ +DPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 308 EIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of Cucsa.108230 vs. NCBI nr
Match: gi|596014470|ref|XP_007218738.1| (hypothetical protein PRUPE_ppa009149mg [Prunus persica])

HSP 1 Score: 416.8 bits (1070), Expect = 3.6e-113
Identity = 205/287 (71.43%), Postives = 237/287 (82.58%), Query Frame = 1


Query: 19  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 78
           MLTL Y+ PV ++R+E +  S   SS V+CAAKGPRPRYPRVWK  KRIGTISK+ KLV+
Sbjct: 1   MLTLTYSLPVFTRRLEFIKISHSRSSVVLCAAKGPRPRYPRVWKANKRIGTISKSIKLVE 60

Query: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138
            +KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ+EWKRIIQ++KWMLSKGQG
Sbjct: 61  SIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQKEWKRIIQVSKWMLSKGQG 120

Query: 139 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 198
           RTMG+YFTLLNALAEDGR++EAEELW KLFSQ+LES+PR+FF KMIS+YY   +HDK+FE
Sbjct: 121 RTMGTYFTLLNALAEDGRVEEAEELWTKLFSQYLESMPRMFFDKMISIYYRHGIHDKMFE 180

Query: 199 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 258
           +FADMEELGVQPN++IVTKVGNVFQELGMLDKY KL +KYPPPKWEYRYIKGKRVKIRA 
Sbjct: 181 IFADMEELGVQPNVSIVTKVGNVFQELGMLDKYHKLKQKYPPPKWEYRYIKGKRVKIRAN 240

Query: 259 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSED 306
           Y  EN  +    S+  +  HSS   +      +ED   E+ +  S D
Sbjct: 241 Y--ENDGAEKMPSQEKETVHSSEELLAAESNPNEDVVAEEGDQNSSD 285

[Close]

BLAST of Cucsa.108230 vs. NCBI nr
Match: gi|645258309|ref|XP_008234826.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Prunus mume])

HSP 1 Score: 416.4 bits (1069), Expect = 4.7e-113
Identity = 206/294 (70.07%), Postives = 243/294 (82.65%), Query Frame = 1


Query: 19  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 78
           MLTL Y+ PV ++R E +  S   SS VVCAAKGPRPRYPRVWK  KRIGTISK+ KLV+
Sbjct: 1   MLTLTYSLPVFTRRPEFIKISHSRSSVVVCAAKGPRPRYPRVWKANKRIGTISKSIKLVE 60

Query: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138
            +KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ+EWKRIIQ++KWMLSKGQG
Sbjct: 61  SIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQKEWKRIIQVSKWMLSKGQG 120

Query: 139 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 198
           RTMG+YFTLLNALAEDGR++EAEELW KLFSQ+LES+PR+FF KMIS+YY   +HDK+FE
Sbjct: 121 RTMGTYFTLLNALAEDGRVEEAEELWTKLFSQYLESMPRMFFDKMISIYYRHGIHDKMFE 180

Query: 199 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 258
           +FADMEELGVQPN++IVTKVGNVFQELGMLDKY KL +KYPPPKWEYRYIKGKRVKIRA 
Sbjct: 181 IFADMEELGVQPNVSIVTKVGNVFQELGMLDKYHKLKQKYPPPKWEYRYIKGKRVKIRAN 240

Query: 259 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILED 313
           Y  EN  +    S+  +  HSS   ++     +ED  + ++ D  ++  ++LE+
Sbjct: 241 Y--ENDGAEKMRSKEKETVHSSEELLEAESNPNEDVVVAEEGD--QNSSDLLEE 290

[Close]

BLAST of Cucsa.108230 vs. NCBI nr
Match: gi|694385816|ref|XP_009368722.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like [Pyrus x bretschneideri])

HSP 1 Score: 407.1 bits (1045), Expect = 2.9e-110
Identity = 200/295 (67.80%), Postives = 240/295 (81.36%), Query Frame = 1


Query: 19  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 78
           MLTL ++ P  ++ +E +  S   SS VVCA KGPRPRYPRVWK  KRIGT+SK+ KLV+
Sbjct: 1   MLTLQHSLPAFTRGLEFIKSSHSRSSVVVCAQKGPRPRYPRVWKANKRIGTVSKSLKLVE 60

Query: 79  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138
            +KGLSNVKEEVYGALDSFIAWELEFPLITVKKALK+LENQ+EWKRIIQ++KWMLSKGQG
Sbjct: 61  SIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKSLENQKEWKRIIQVSKWMLSKGQG 120

Query: 139 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 198
           RTMG+YFTLL ALAEDGR++EAEELW KLFSQ+LES+PR+FF KMIS+YY   +HDK+FE
Sbjct: 121 RTMGTYFTLLTALAEDGRIEEAEELWTKLFSQYLESMPRMFFDKMISIYYQHGLHDKMFE 180

Query: 199 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 258
           +FADMEELGVQPN++IVTKVGNVF+ELGMLDKY KL KKYPPPKWEYRYIKGKRVK+RA 
Sbjct: 181 IFADMEELGVQPNVSIVTKVGNVFKELGMLDKYNKLKKKYPPPKWEYRYIKGKRVKVRAN 240

Query: 259 YLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDE 314
           Y +++  +   +SE  +   SS   + EAE   ++  +E +E+     D  L DE
Sbjct: 241 YQNQSDGAARVISEEKETVRSSEELL-EAESNPDEQIVEAEEEDQNSND--LSDE 292

The following BLAST results are available for this feature:

BLAST of Cucsa.108230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP332_ARATH	4.7e-105	65.87	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN...	[more]
PP322_ARATH	5.9e-47	47.06	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]

BLAST of Cucsa.108230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Q9_CUCSA	4.3e-190	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G184050 PE=4 SV=1	[more]
M5X1I2_PRUPE	2.5e-113	71.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009149mg PE=4 SV=1	[more]
E0CUT0_VITVI	5.8e-110	67.34	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01450 PE=4 SV=...	[more]
A0A0D2MKB7_GOSRA	9.9e-110	65.36	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G069300 PE=4 SV=1	[more]
A0A059DJN2_EUCGR	1.7e-109	67.80	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02720 PE=4 SV=1	[more]

BLAST of Cucsa.108230 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21190.1	2.7e-106	65.87	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.1	3.3e-48	47.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G04590.2	2.6e-29	36.76	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat...	[more]
AT4G36680.1	9.1e-06	24.11	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cucsa.108230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679730\|ref\|XP_004140747.2\|	6.2e-190	100.00	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativu...	[more]
gi\|659077628\|ref\|XP_008439301.1\|	3.4e-180	94.26	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Cucumis melo]	[more]
gi\|596014470\|ref\|XP_007218738.1\|	3.6e-113	71.43	hypothetical protein PRUPE_ppa009149mg [Prunus persica]	[more]
gi\|645258309\|ref\|XP_008234826.1\|	4.7e-113	70.07	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Prunus mume]	[more]
gi\|694385816\|ref\|XP_009368722.1\|	2.9e-110	67.80	PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like [Pyrus x b...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.108230.1	Cucsa.108230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 146..167 score:
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 140..174 score: 8.977coord: 176..210 score: 8
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..7 score: 1.6E-65coord: 57..231 score: 1.6
None	No IPR available	PANTHER	PTHR24015:SF628	SUBFAMILY NOT NAMED	coord: 1..7 score: 1.6E-65coord: 57..231 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.108230	Cla006138	Watermelon (97103) v1	cgywmB152
Cucsa.108230	Csa3G184050	Cucumber (Chinese Long) v2	cgycuB132
Cucsa.108230	MELO3C006950	Melon (DHL92) v3.5.1	cgymeB142
Cucsa.108230	ClCG05G008480	Watermelon (Charleston Gray)	cgywcgB152
Cucsa.108230	CSPI03G17370	Wild cucumber (PI 183967)	cgycpiB133
Cucsa.108230	CmaCh18G012760	Cucurbita maxima (Rimu)	cgycmaB0249
Cucsa.108230	CmoCh18G013070	Cucurbita moschata (Rifu)	cgycmoB0248
Cucsa.108230	Lsi05G011840	Bottle gourd (USVL1VR-Ls)	cgylsiB143
Cucsa.108230	Cp4.1LG09g00580	Cucurbita pepo (Zucchini)	cgycpeB0240
Cucsa.108230	MELO3C006950.2	Melon (DHL92) v3.6.1	cgymedB146
Cucsa.108230	CsaV3_3G017570	Cucumber (Chinese Long) v3	cgycucB137
Cucsa.108230	Cla97C05G090590	Watermelon (97103) v2	cgywmbB147
Cucsa.108230	Carg22138	Silver-seed gourd	carcgyB0828

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.108230	Wax gourd	cgywgoB169
Cucsa.108230	Cucurbita maxima (Rimu)	cgycmaB0248
Cucsa.108230	Cucurbita maxima (Rimu)	cgycmaB0251
Cucsa.108230	Cucurbita moschata (Rifu)	cgycmoB0247
Cucsa.108230	Cucurbita moschata (Rifu)	cgycmoB0250
Cucsa.108230	Melon (DHL92) v3.5.1	cgymeB146
Cucsa.108230	Cucurbita pepo (Zucchini)	cgycpeB0241
Cucsa.108230	Cucurbita pepo (Zucchini)	cgycpeB0244
Cucsa.108230	Silver-seed gourd	carcgyB0794
Cucsa.108230	Silver-seed gourd	carcgyB1105