CsGy3G017420.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G017420.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pentatricopeptide repeat-containing protein isoform X2
Location	Chr3 : 13391187 .. 13393788 (+)
Sequence length	1355

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAATAGTGAAATTATCTTTTGAAAAATGGGTTTTGAGATATTTGGGGGCAATTTTCCGTAGAAAAATTGGGAATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGTAAGCTCTCCCTTTCTCCTTATCTCTATTTCTCTCAACTTTCGTGCTTGGTTACTGAGAAAAATTCAAAAAGAAAACGAGAAATTTGTTCTTATATACGAAGTATGCTTTGTGTGGACGATGAAATTTATTCATTTCCTTGAATAGCGATTTCGTGTTTTGCCTGGTTCCTCCTAGAGCTGGAAATTTTGATTTAAATTCGTTGAAATCTATTGACATTTGATCTCATTTGCTGGTTCAGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTAAGTCTTCTCGTCAGTTACTTCGCTGCTAGCGATGATAAACGGAAATTGGGTTTAATTTTTACGCAATTCCTGAAATTTTCTTTCACTTCTTACCCAAGAGTTATTTTGTAGGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAGCTCTCTTGTTCCTGTCTCACCAATCCTATATATCCTCCATCCATAAGTAGGGTGACATGATGCCTATTCAAATTGGATTTTCATAGTAGAAAATCTTTTCTTTCATCTTCATTGGGGGTATATTTGGGATGCATTTTCAGACTTTTGGAATTATTTTTGACAGCATAACCAAACATCAAGCAAATTTTAAATAGTACTTTTGATTTCCAACATAAATTTTCACCATATTTAAATTCAACACCAAAGTCACCCTTAATGTAATGCAGTCTCTTTTTATTTGTTATATGATGTAACTCTAAATTTACCTTCATTCATGAGCTTGAGCTTTTGGTTTCAATGGGTGATTTAACATGGTATCTAAGTGGATGGTCTAGGTGATCCTCTATTCAAATCCATGCAACATTAGTTCCTTTTCAATCAATATGTTAGTTCCTTTTCAATTAATATTGATTTTCACTTGTTCGATAGTCTATATATTTCAAGCCACAAGTGAGGGGAGTGTTAGATGGAAAATTCAATGATCTAACATTGCTTCTTGTTGCTACTTTTGAACTTGTTAACTTCTGGGTCGACCTTTTTAAGTACTGACTTCGCATTTTAGGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGGTACATTCTTACATGTTTCTTTCATGTCCATTCTTGCTCTGCCCTTTTGTCCTGAGGATGTTGCTGACGAAATGAGTTAAGCAAAATGAGTATACTATTGTAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTCGTTTTATTGCTACAGAAGTAGTTTCAACTGCATTGGTCACAAATCTCTAACCATTCCTTCCACTCCATATTGATTAAAAAAGGGATAAAAGTTATGATACATGGTGCCGATATATCATTTTTAGTTCAATCATATTGAGTTCCATGGGTAACGAAATTTAACTATGATTGACTTAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAAATATATACACATTGTAGTTCCTTGTCGAAGTTTGTCATAGCGTAGACTTTTATATCAGTTATTATTTGTAGTTTTAATAGACGAGATGACACATTGATCATAGAGCCAATTCCCTTTATTTCATCCTTGAATATTATAGTCCCCGATCCAACATATGGCCTAGGCTTATGATGAAACAAGGGAACAATTCTTGGTTTAAAATTTTCATTAACAAAATATACGAACGTGGTCTTATAACTCATGAGGAAAAAAAAGGTTGCTG

mRNA sequence

AAAAAAATAGTGAAATTATCTTTTGAAAAATGGGTTTTGAGATATTTGGGGGCAATTTTCCGTAGAAAAATTGGGAATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAAATATATACACATTGTAGTTCCTTGTCGAAGTTTGTCATAGCGTAGACTTTTATATCAGTTATTATTTGTAGTTTTAATAGACGAGATGACACATTGATCATAGAGCCAATTCCCTTTATTTCATCCTTGAATATTATAGTCCCCGATCCAACATATGGCCTAGGCTTATGATGAAACAAGGGAACAATTCTTGGTTTAAAATTTTCATTAACAAAATATACGAACGTGGTCTTATAACTCATGAGGAAAAAAAAGGTTGCTG

Coding sequence (CDS)

ATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAA

Protein sequence

MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL

Homology

[Close]

BLAST of CsGy3G017420.1 vs. NCBI nr
Match: XP_004140747.2 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus] >KGN57423.1 hypothetical protein Csa_3G184050 [Cucumis sativus])

HSP 1 Score: 623.6 bits (1607), Expect = 3.9e-175
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK
Sbjct: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300
           LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 339
           XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of CsGy3G017420.1 vs. NCBI nr
Match: XP_008439301.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Cucumis melo])

HSP 1 Score: 595.1 bits (1533), Expect = 1.5e-166
Identity = 301/338 (89.05%), Postives = 309/338 (91.42%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           M IIFTSMTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MRIIFTSMTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           S+PRIFFHKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+K
Sbjct: 181 SMPRIFFHKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300
           LMKKYPPPKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEIT   
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSED 300

Query: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 339
                             DEHMWSKSNFEHDFMGLGQL
Sbjct: 301 SSLEDDEEIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of CsGy3G017420.1 vs. NCBI nr
Match: XP_016899030.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Cucumis melo])

HSP 1 Score: 564.7 bits (1454), Expect = 2.1e-157
Identity = 281/315 (89.21%), Postives = 289/315 (91.75%), Query Frame = 0


Query: 24  YRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKL 83
           +RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKL
Sbjct: 40  FRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKL 99

Query: 84  VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 143
           VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG
Sbjct: 100 VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 159

Query: 144 QGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKL 203
           QGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKL
Sbjct: 160 QGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKL 219

Query: 204 FEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIR 263
           FEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR
Sbjct: 220 FEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIR 279

Query: 264 AKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXXXXXXXXXXXXXXXXXXXXDEHMW 323
            KYLSENGNS NGLSE  KMEHSSTNS+DEAEIT                     DEHMW
Sbjct: 280 TKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMW 339

Query: 324 SKSNFEHDFMGLGQL 339
           SKSNFEHDFMGLGQL
Sbjct: 340 SKSNFEHDFMGLGQL 354

[Close]

BLAST of CsGy3G017420.1 vs. NCBI nr
Match: XP_022945794.1 (pentatricopeptide repeat-containing protein At4g21190 [Cucurbita moschata])

HSP 1 Score: 488.0 bits (1255), Expect = 2.5e-134
Identity = 277/332 (83.43%), Postives = 292/332 (87.95%), Query Frame = 0


Query: 8   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67
           M HSL  A+LSS LAS RM TL+Y+FPV SK IESV FS   SSSVVCAAKGPRPRYPRV
Sbjct: 1   MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRV 60

Query: 68  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127
           WKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE QR
Sbjct: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQR 120

Query: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 187
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALA DGRLDEAEELWNKLFSQHLES+PRIFF
Sbjct: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAADGRLDEAEELWNKLFSQHLESMPRIFF 180

Query: 188 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 247
           HKMISLYY++ MHDKLFE+FADMEELGVQP+MAIVTK+GNVFQ+LGMLDKY+KL KKYPP
Sbjct: 181 HKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTKLGNVFQKLGMLDKYEKLKKKYPP 240

Query: 248 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXXXXXXXXX 307
           PKWEYRYI+GKRVKIRAK L ENG+SNNG  E  K EHSST  +      XXXXXXXXXX
Sbjct: 241 PKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEHSSTEELXXXXXXXXXXXXXXXX 300

Query: 308 XXXXXXXXXXXDEHMWSK-SNFEHDFMGLGQL 339
           XXXXXXXXXXX      K S FEHDFMG GQL
Sbjct: 301 XXXXXXXXXXXXXXXXXKESTFEHDFMGFGQL 332

[Close]

BLAST of CsGy3G017420.1 vs. NCBI nr
Match: XP_022140817.1 (pentatricopeptide repeat-containing protein At4g21190 [Momordica charantia])

HSP 1 Score: 483.4 bits (1243), Expect = 6.2e-133
Identity = 259/336 (77.08%), Postives = 282/336 (83.93%), Query Frame = 0


Query: 3   IIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRP 62
           ++ +SM HS  QA+LSS  AS RM TL+Y+FPV SKRIESV FSW  SS+VVCAAKGPRP
Sbjct: 8   LLRSSMAHSPVQASLSSSSASNRMRTLIYSFPVISKRIESVKFSWSASSTVVCAAKGPRP 67

Query: 63  RYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKT 122
           RYPRVWKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKT
Sbjct: 68  RYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKT 127

Query: 123 LENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESI 182
           LE QREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQ+LES+
Sbjct: 128 LEIQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQYLESM 187

Query: 183 PRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLM 242
           PR+FFHKMISLYYDQ MHDKLFEVFADMEELGVQPN  IVT +GNVFQELGM DKY+KL 
Sbjct: 188 PRMFFHKMISLYYDQGMHDKLFEVFADMEELGVQPNTEIVTMIGNVFQELGMFDKYEKLK 247

Query: 243 KKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXXXX 302
           KKYPP KWEYRY+KGKRV+IRAKYL+E GNSNNG SE  + + SS   ++EAE T     
Sbjct: 248 KKYPPLKWEYRYVKGKRVRIRAKYLNEYGNSNNGSSELDQKDDSSIKLLEEAE-TVSKDS 307

Query: 303 XXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 339
                    XXXXXXX         FE++FMG G+L
Sbjct: 308 SLEDEEMREXXXXXXXXXXXXXXXXFEYNFMGYGRL 342

[Close]

BLAST of CsGy3G017420.1 vs. TAIR10
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 365.9 bits (938), Expect = 2.6e-101
Identity = 180/256 (70.31%), Postives = 217/256 (84.77%), Query Frame = 0


Query: 26  MLTLVYTFP---VTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 85
           ML+L Y+ P   + ++   +  F+  P++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 86  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 145
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 146 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDK 205
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY + MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 206 LFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKI 265
           LFEVFADMEELGV+PN+AIV+ VG VF +L M DKY+KLMKKYPPP+WE+RYIKG+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 266 RAKYLSENGNSNNGLS 279
           +AK L+E      GLS
Sbjct: 241 KAKQLNELSEGEGGLS 256

[Close]

BLAST of CsGy3G017420.1 vs. TAIR10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 185.3 bits (469), Expect = 6.4e-47
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 67  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 126
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 127 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 186
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 187 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 246
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 247 PPKWEYRYIKGKRVKIRAKYLSEN 271
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

[Close]

BLAST of CsGy3G017420.1 vs. TAIR10
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4))

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-28
Identity = 68/185 (36.76%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 65  PRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLE 124
           PR  +  + I    K   LV+ +  + + KE VYGALD+++AWE  FP+ ++K  + +LE
Sbjct: 131 PRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLE 190

Query: 125 NQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPR 184
            + +W R++Q+ KW+LSKGQG TMG+Y  L+ AL  D R +EA  +W K     L S+P 
Sbjct: 191 KEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPW 250

Query: 185 IFFHKMISLYYDQAMHDKLFEV---FADMEELGVQ-PNMAIVTKVGNVFQELGMLDKYKK 244
               +M+ +Y+   M  +L +V   F D+E    + P+  IV  V + ++ LGMLD+ ++
Sbjct: 251 QLCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKER 310

Query: 245 LMKKY 246
           ++ KY
Sbjct: 311 VVTKY 315

[Close]

BLAST of CsGy3G017420.1 vs. Swiss-Prot
Match: sp|Q8LG95|PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.7e-100
Identity = 180/256 (70.31%), Postives = 217/256 (84.77%), Query Frame = 0


Query: 26  MLTLVYTFP---VTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 85
           ML+L Y+ P   + ++   +  F+  P++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 86  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 145
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 146 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDK 205
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY + MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 206 LFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKI 265
           LFEVFADMEELGV+PN+AIV+ VG VF +L M DKY+KLMKKYPPP+WE+RYIKG+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 266 RAKYLSENGNSNNGLS 279
           +AK L+E      GLS
Sbjct: 241 KAKQLNELSEGEGGLS 256

[Close]

BLAST of CsGy3G017420.1 vs. Swiss-Prot
Match: sp|Q2V3H0|PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-45
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 67  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 126
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 127 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 186
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 187 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 246
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 247 PPKWEYRYIKGKRVKIRAKYLSEN 271
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

[Close]

BLAST of CsGy3G017420.1 vs. TrEMBL
Match: tr|A0A0A0L6Q9|A0A0A0L6Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 2.6e-175
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK
Sbjct: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300
           LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 339
           XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of CsGy3G017420.1 vs. TrEMBL
Match: tr|A0A1S3AY30|A0A1S3AY30_CUCME (pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 595.1 bits (1533), Expect = 9.7e-167
Identity = 301/338 (89.05%), Postives = 309/338 (91.42%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           M IIFTSMTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MRIIFTSMTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           S+PRIFFHKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+K
Sbjct: 181 SMPRIFFHKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXX 300
           LMKKYPPPKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEIT   
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSED 300

Query: 301 XXXXXXXXXXXXXXXXXXDEHMWSKSNFEHDFMGLGQL 339
                             DEHMWSKSNFEHDFMGLGQL
Sbjct: 301 SSLEDDEEIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of CsGy3G017420.1 vs. TrEMBL
Match: tr|A0A1S4DTK8|A0A1S4DTK8_CUCME (pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 1.4e-157
Identity = 281/315 (89.21%), Postives = 289/315 (91.75%), Query Frame = 0


Query: 24  YRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKL 83
           +RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKL
Sbjct: 40  FRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKL 99

Query: 84  VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 143
           VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG
Sbjct: 100 VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 159

Query: 144 QGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKL 203
           QGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKL
Sbjct: 160 QGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKL 219

Query: 204 FEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIR 263
           FEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR
Sbjct: 220 FEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIR 279

Query: 264 AKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITXXXXXXXXXXXXXXXXXXXXXDEHMW 323
            KYLSENGNS NGLSE  KMEHSSTNS+DEAEIT                     DEHMW
Sbjct: 280 TKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMW 339

Query: 324 SKSNFEHDFMGLGQL 339
           SKSNFEHDFMGLGQL
Sbjct: 340 SKSNFEHDFMGLGQL 354

[Close]

BLAST of CsGy3G017420.1 vs. TrEMBL
Match: tr|A0A2I4G3X3|A0A2I4G3X3_9ROSI (pentatricopeptide repeat-containing protein At4g21190 OS=Juglans regia OX=51240 GN=LOC109004499 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.4e-109
Identity = 198/270 (73.33%), Postives = 230/270 (85.19%), Query Frame = 0


Query: 26  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 85
           MLTL Y+ P+  KR+ES+      S  VVCA+KGPRPRYPRVWKT+KRIGTISK++KL+D
Sbjct: 1   MLTLTYSLPIVIKRLESIKIPKSTSRVVVCASKGPRPRYPRVWKTRKRIGTISKSSKLID 60

Query: 86  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 145
           C+  LSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEN+ EWKRIIQ+TKWMLSKGQG
Sbjct: 61  CIMKLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENEGEWKRIIQVTKWMLSKGQG 120

Query: 146 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 205
           RTMGSYFTLLNALAEDGRLDEAEELW KLF ++LES PRIFF KMIS+YY +AMH+K+FE
Sbjct: 121 RTMGSYFTLLNALAEDGRLDEAEELWTKLFKENLESTPRIFFDKMISIYYKRAMHEKMFE 180

Query: 206 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 265
           +FADMEELGV+PN++IV+ VGNVF+ELGM+DKY KL KKYPPPKWEY+YIKGKR+KI+AK
Sbjct: 181 IFADMEELGVRPNVSIVSMVGNVFKELGMMDKYNKLKKKYPPPKWEYQYIKGKRIKIKAK 240

Query: 266 YLSENGNSNNGLSEHAKMEHSSTNSIDEAE 296
           +L E   SN   S   K + +     +EAE
Sbjct: 241 HLDEYHVSNEEASRREKTDQTLNVMHEEAE 270

[Close]

BLAST of CsGy3G017420.1 vs. TrEMBL
Match: tr|M5X1I2|M5X1I2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G302200 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 4.2e-109
Identity = 200/262 (76.34%), Postives = 228/262 (87.02%), Query Frame = 0


Query: 26  MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 85
           MLTL Y+ PV ++R+E +  S   SS V+CAAKGPRPRYPRVWK  KRIGTISK+ KLV+
Sbjct: 1   MLTLTYSLPVFTRRLEFIKISHSRSSVVLCAAKGPRPRYPRVWKANKRIGTISKSIKLVE 60

Query: 86  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 145
            +KGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ+EWKRIIQ++KWMLSKGQG
Sbjct: 61  SIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQKEWKRIIQVSKWMLSKGQG 120

Query: 146 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 205
           RTMG+YFTLLNALAEDGR++EAEELW KLFSQ+LES+PR+FF KMIS+YY   +HDK+FE
Sbjct: 121 RTMGTYFTLLNALAEDGRVEEAEELWTKLFSQYLESMPRMFFDKMISIYYRHGIHDKMFE 180

Query: 206 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 265
           +FADMEELGVQPN++IVTKVGNVFQELGMLDKY KL +KYPPPKWEYRYIKGKRVKIRA 
Sbjct: 181 IFADMEELGVQPNVSIVTKVGNVFQELGMLDKYHKLKQKYPPPKWEYRYIKGKRVKIRAN 240

Query: 266 YLSENGNSNNGLSEHAKMEHSS 288
           Y  EN  +    S+  +  HSS
Sbjct: 241 Y--ENDGAEKMPSQEKETVHSS 260

The following BLAST results are available for this feature:

BLAST of CsGy3G017420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140747.2	3.9e-175	100.00	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativu...	[more]
XP_008439301.1	1.5e-166	89.05	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Cuc...	[more]
XP_016899030.1	2.1e-157	89.21	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Cuc...	[more]
XP_022945794.1	2.5e-134	83.43	pentatricopeptide repeat-containing protein At4g21190 [Cucurbita moschata]	[more]
XP_022140817.1	6.2e-133	77.08	pentatricopeptide repeat-containing protein At4g21190 [Momordica charantia]	[more]

BLAST of CsGy3G017420.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21190.1	2.6e-101	70.31	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.1	6.4e-47	47.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G04590.2	1.7e-28	36.76	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]

BLAST of CsGy3G017420.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LG95\|PP332_ARATH	4.7e-100	70.31	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]
sp\|Q2V3H0\|PP322_ARATH	1.1e-45	47.06	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]

BLAST of CsGy3G017420.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6Q9\|A0A0A0L6Q9_CUCSA	2.6e-175	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1	[more]
tr\|A0A1S3AY30\|A0A1S3AY30_CUCME	9.7e-167	89.05	pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo...	[more]
tr\|A0A1S4DTK8\|A0A1S4DTK8_CUCME	1.4e-157	89.21	pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A2I4G3X3\|A0A2I4G3X3_9ROSI	2.4e-109	73.33	pentatricopeptide repeat-containing protein At4g21190 OS=Juglans regia OX=51240 ...	[more]
tr\|M5X1I2\|M5X1I2_PRUPE	4.2e-109	76.34	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G302200 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G017420	CsGy3G017420	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G017420.1.five_prime_UTR.1	CsGy3G017420.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G017420.1.exon.1	CsGy3G017420.1.exon.1	exon
CsGy3G017420.1.exon.2	CsGy3G017420.1.exon.2	exon
CsGy3G017420.1.exon.3	CsGy3G017420.1.exon.3	exon
CsGy3G017420.1.exon.4	CsGy3G017420.1.exon.4	exon
CsGy3G017420.1.exon.5	CsGy3G017420.1.exon.5	exon
CsGy3G017420.1.exon.6	CsGy3G017420.1.exon.6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G017420.1.CDS.1	CsGy3G017420.1.CDS.1	CDS
CsGy3G017420.1.CDS.2	CsGy3G017420.1.CDS.2	CDS
CsGy3G017420.1.CDS.3	CsGy3G017420.1.CDS.3	CDS
CsGy3G017420.1.CDS.4	CsGy3G017420.1.CDS.4	CDS
CsGy3G017420.1.CDS.5	CsGy3G017420.1.CDS.5	CDS
CsGy3G017420.1.CDS.6	CsGy3G017420.1.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G017420.1.three_prime_UTR.1	CsGy3G017420.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G017420.1	CsGy3G017420.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 73..310 e-value: 4.0E-16 score: 61.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..317
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 27..322
None	No IPR available	PANTHER	PTHR24015:SF964	SUBFAMILY NOT NAMED	coord: 27..322
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 183..217 score: 8.144
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 147..181 score: 8.977