CsGy2G019110 (gene) Cucumber (Gy14) v2

NameCsGy2G019110
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptioncalcium-binding protein-like
LocationChr2 : 28636278 .. 28636577 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTCTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTAAAGATGCCAGCCCAGAAGCCTTGCCATGA

mRNA sequence

ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTCTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTAAAGATGCCAGCCCAGAAGCCTTGCCATGA

Coding sequence (CDS)

ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTCTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTAAAGATGCCAGCCCAGAAGCCTTGCCATGA

Protein sequence

MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGAVDLEGGEIDKLLDYVMRFQAPKDVPKDASPEALP
BLAST of CsGy2G019110 vs. NCBI nr
Match: KGN62521.1 (hypothetical protein Csa_2G359900 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 5.1e-43
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0

Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
           MA SRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMG MMSFQKAHYGVA ADK
Sbjct: 1   MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61  DGDGAVDLEGGEIDKLLDYVMRFQAPKDVPKDASPEALP 100
           DGDGAVDLEGGEID L+DYVMRFQA KDVPKDASPEALP
Sbjct: 61  DGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDASPEALP 99

BLAST of CsGy2G019110 vs. NCBI nr
Match: KGN62514.1 (hypothetical protein Csa_2G357860 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 6.9e-32
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
          MAMSRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG+MMSFQKAHYGV+ ADK
Sbjct: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQAP 87
          DGDG VDL   E++ L+DYVMRFQ P
Sbjct: 61 DGDGKVDLGEAEMENLIDYVMRFQTP 86

BLAST of CsGy2G019110 vs. NCBI nr
Match: KGN62522.1 (hypothetical protein Csa_2G359910 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 8.2e-17
Identity = 50/90 (55.56%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++ AD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGAVDLEGGEIDKLLDYVMRFQAPKDV 90
          +D DG VD +  E++KL+D V+RFQ  K V
Sbjct: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 88

BLAST of CsGy2G019110 vs. NCBI nr
Match: KGN62516.1 (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 5.9e-15
Identity = 39/84 (46.43%), Postives = 65/84 (77.38%), Query Frame = 0

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
          M+ + ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD+
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQ 85
          +GDG ++ E  E+DKL+DY  +FQ
Sbjct: 61 NGDGFIEEE--ELDKLVDYAQKFQ 82

BLAST of CsGy2G019110 vs. NCBI nr
Match: XP_004152805.1 (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 7.7e-15
Identity = 39/83 (46.99%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 2   AMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKD 61
           A+  ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD++
Sbjct: 83  AIKSTRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADEN 142

Query: 62  GDGAVDLEGGEIDKLLDYVMRFQ 85
           GDG ++ E  E+DKL+DY  +FQ
Sbjct: 143 GDGFIEEE--ELDKLVDYAQKFQ 163

BLAST of CsGy2G019110 vs. TAIR10
Match: AT2G15680.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 40.4 bits (93), Expect = 7.4e-04
Identity = 19/56 (33.93%), Postives = 33/56 (58.93%), Query Frame = 0

Query: 14  EVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGAVDLE 70
           ++R      D++GDG+++ +EVM  L  +G   S +  +  V + D DGDG V++E
Sbjct: 121 DIRNSFWTFDLNGDGKISAEEVMSVLWKLGERCSLEDCNRMVRAVDADGDGLVNME 176

BLAST of CsGy2G019110 vs. TAIR10
Match: AT4G12860.1 (EF hand calcium-binding protein family)

HSP 1 Score: 40.0 bits (92), Expect = 9.7e-04
Identity = 18/60 (30.00%), Postives = 35/60 (58.33%), Query Frame = 0

Query: 10 LTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGAVDLE 69
          + R E+  + +  D +GDG++ K E+     S+G M+   + +  +A  D +GDGA+D++
Sbjct: 1  MDRGELSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMDVNGDGAMDID 60

BLAST of CsGy2G019110 vs. Swiss-Prot
Match: sp|Q0DZP5|CML17_ORYSJ (Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica OX=39947 GN=CML17 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.8e-05
Identity = 25/69 (36.23%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 14 EVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGAVDLEGGEI 73
          E+R + E  D DGDGR+T++E+ ++L  +G  +  ++    +A  D +GDG VD++  E 
Sbjct: 8  ELRRVFELFDRDGDGRITREELTESLERLGMPVHREELAATIARIDANGDGCVDMD--EF 67

Query: 74 DKLLDYVMR 83
           +L + VMR
Sbjct: 68 TQLYETVMR 74

BLAST of CsGy2G019110 vs. Swiss-Prot
Match: sp|Q5ZCK5|CML16_ORYSJ (Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica OX=39947 GN=CML16 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.4e-04
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 0

Query: 14  EVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGAVDLE 70
           E+R   + +DVDGDGR+T  E+ + L  +G   S ++    +AS D DGDG V  E
Sbjct: 104 ELRAAFDVYDVDGDGRITAAELGKVLGRIGEGCSAEECERMIASVDVDGDGCVGFE 159

BLAST of CsGy2G019110 vs. TrEMBL
Match: tr|A0A0A0LRC3|A0A0A0LRC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-43
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0

Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
           MA SRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMG MMSFQKAHYGVA ADK
Sbjct: 1   MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61  DGDGAVDLEGGEIDKLLDYVMRFQAPKDVPKDASPEALP 100
           DGDGAVDLEGGEID L+DYVMRFQA KDVPKDASPEALP
Sbjct: 61  DGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDASPEALP 99

BLAST of CsGy2G019110 vs. TrEMBL
Match: tr|A0A0A0LNG3|A0A0A0LNG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357860 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.6e-32
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
          MAMSRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG+MMSFQKAHYGV+ ADK
Sbjct: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQAP 87
          DGDG VDL   E++ L+DYVMRFQ P
Sbjct: 61 DGDGKVDLGEAEMENLIDYVMRFQTP 86

BLAST of CsGy2G019110 vs. TrEMBL
Match: tr|A0A0A0LP50|A0A0A0LP50_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359910 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.4e-17
Identity = 50/90 (55.56%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++ AD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGAVDLEGGEIDKLLDYVMRFQAPKDV 90
          +D DG VD +  E++KL+D V+RFQ  K V
Sbjct: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 88

BLAST of CsGy2G019110 vs. TrEMBL
Match: tr|A0A0A0LRC1|A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-15
Identity = 39/84 (46.43%), Postives = 65/84 (77.38%), Query Frame = 0

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
          M+ + ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD+
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQ 85
          +GDG ++ E  E+DKL+DY  +FQ
Sbjct: 61 NGDGFIEEE--ELDKLVDYAQKFQ 82

BLAST of CsGy2G019110 vs. TrEMBL
Match: tr|A0A0A0LKX1|A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.0e-12
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 6  SQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGA 65
          S+   +R+E++EI  EHD+DGDG L+  E+++A+  +G  + F KAHYG+A  D++GDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 VDLEGGEIDKLLDYVMRFQ 85
          +  +  E+DKL+DY  RFQ
Sbjct: 67 ISED--ELDKLIDYAERFQ 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN62521.15.1e-4393.94hypothetical protein Csa_2G359900 [Cucumis sativus][more]
KGN62514.16.9e-3284.88hypothetical protein Csa_2G357860 [Cucumis sativus][more]
KGN62522.18.2e-1755.56hypothetical protein Csa_2G359910 [Cucumis sativus][more]
KGN62516.15.9e-1546.43hypothetical protein Csa_2G358870 [Cucumis sativus][more]
XP_004152805.17.7e-1546.99PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT2G15680.17.4e-0433.93Calcium-binding EF-hand family protein[more]
AT4G12860.19.7e-0430.00EF hand calcium-binding protein family[more]
Match NameE-valueIdentityDescription
sp|Q0DZP5|CML17_ORYSJ3.8e-0536.23Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
sp|Q5ZCK5|CML16_ORYSJ5.4e-0441.07Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0LRC3|A0A0A0LRC3_CUCSA3.4e-4393.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359900 PE=4 SV=1[more]
tr|A0A0A0LNG3|A0A0A0LNG3_CUCSA4.6e-3284.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357860 PE=4 SV=1[more]
tr|A0A0A0LP50|A0A0A0LP50_CUCSA5.4e-1755.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359910 PE=4 SV=1[more]
tr|A0A0A0LRC1|A0A0A0LRC1_CUCSA3.9e-1546.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1[more]
tr|A0A0A0LKX1|A0A0A0LKX1_CUCSA9.0e-1245.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G019110.1CsGy2G019110.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 14..42
e-value: 3.1E-4
score: 30.1
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 14..42
e-value: 2.0E-6
score: 26.9
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 10..45
score: 13.593
IPR002048EF-hand domainCDDcd00051EFhcoord: 14..69
e-value: 7.13303E-9
score: 46.7721
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 1..30
e-value: 4.6E-5
score: 25.5
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 31..80
e-value: 7.1E-6
score: 27.8
NoneNo IPR availablePANTHERPTHR44455FAMILY NOT NAMEDcoord: 4..82
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 23..35
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 8..69

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G019110MELO3C010869Melon (DHL92) v3.5.1cgybmeB102
CsGy2G019110Lsi08G014650Bottle gourd (USVL1VR-Ls)cgyblsiB129
CsGy2G019110Cp4.1LG07g05260Cucurbita pepo (Zucchini)cgybcpeB270
CsGy2G019110Cla97C08G159400Watermelon (97103) v2cgybwmbB156
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G019110Wax gourdcgybwgoB157
CsGy2G019110Wax gourdcgybwgoB190
CsGy2G019110Cucumber (Gy14) v2cgybcgybB056
CsGy2G019110Cucumber (Gy14) v2cgybcgybB073
CsGy2G019110Cucurbita maxima (Rimu)cgybcmaB147
CsGy2G019110Cucurbita maxima (Rimu)cgybcmaB158
CsGy2G019110Cucurbita maxima (Rimu)cgybcmaB179
CsGy2G019110Cucurbita maxima (Rimu)cgybcmaB210
CsGy2G019110Cucurbita maxima (Rimu)cgybcmaB199
CsGy2G019110Cucurbita maxima (Rimu)cgybcmaB250
CsGy2G019110Cucurbita moschata (Rifu)cgybcmoB138
CsGy2G019110Cucurbita moschata (Rifu)cgybcmoB156
CsGy2G019110Cucurbita moschata (Rifu)cgybcmoB171
CsGy2G019110Cucurbita moschata (Rifu)cgybcmoB193
CsGy2G019110Cucurbita moschata (Rifu)cgybcmoB238
CsGy2G019110Cucurbita pepo (Zucchini)cgybcpeB161
CsGy2G019110Cucurbita pepo (Zucchini)cgybcpeB186
CsGy2G019110Cucurbita pepo (Zucchini)cgybcpeB224
CsGy2G019110Cucurbita pepo (Zucchini)cgybcpeB237
CsGy2G019110Cucurbita pepo (Zucchini)cgybcpeB254
CsGy2G019110Cucumber (Chinese Long) v2cgybcuB057
CsGy2G019110Cucumber (Chinese Long) v2cgybcuB073
CsGy2G019110Cucumber (Chinese Long) v2cgybcuB087
CsGy2G019110Bottle gourd (USVL1VR-Ls)cgyblsiB103
CsGy2G019110Bottle gourd (USVL1VR-Ls)cgyblsiB104
CsGy2G019110Melon (DHL92) v3.6.1cgybmedB101
CsGy2G019110Melon (DHL92) v3.5.1cgybmeB090
CsGy2G019110Melon (DHL92) v3.5.1cgybmeB128
CsGy2G019110Melon (DHL92) v3.6.1cgybmedB087
CsGy2G019110Melon (DHL92) v3.6.1cgybmedB127
CsGy2G019110Watermelon (Charleston Gray)cgybwcgB125
CsGy2G019110Watermelon (Charleston Gray)cgybwcgB131
CsGy2G019110Watermelon (Charleston Gray)cgybwcgB155
CsGy2G019110Watermelon (97103) v1cgybwmB108
CsGy2G019110Watermelon (97103) v1cgybwmB119
CsGy2G019110Watermelon (97103) v1cgybwmB142
CsGy2G019110Wild cucumber (PI 183967)cgybcpiB057
CsGy2G019110Wild cucumber (PI 183967)cgybcpiB074
CsGy2G019110Wild cucumber (PI 183967)cgybcpiB088
CsGy2G019110Silver-seed gourdcarcgybB0110
CsGy2G019110Silver-seed gourdcarcgybB0195
CsGy2G019110Silver-seed gourdcarcgybB0766
CsGy2G019110Cucumber (Chinese Long) v3cgybcucB065
CsGy2G019110Cucumber (Chinese Long) v3cgybcucB081
CsGy2G019110Watermelon (97103) v2cgybwmbB127