CsGy2G019110.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy2G019110.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptioncalcium-binding protein-like
LocationChr2 : 28636278 .. 28636577 (+)
Sequence length300
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTCTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTAAAGATGCCAGCCCAGAAGCCTTGCCATGA

mRNA sequence

ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTCTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTAAAGATGCCAGCCCAGAAGCCTTGCCATGA

Coding sequence (CDS)

ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTCTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTAAAGATGCCAGCCCAGAAGCCTTGCCATGA

Protein sequence

MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGAVDLEGGEIDKLLDYVMRFQAPKDVPKDASPEALP
Homology
[Close]
BLAST of CsGy2G019110.1 vs. NCBI nr
Match: KGN62521.1 (hypothetical protein Csa_2G359900 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 5.1e-43
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
           MA SRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMG MMSFQKAHYGVA ADK
Sbjct: 1   MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61  DGDGAVDLEGGEIDKLLDYVMRFQAPKDVPKDASPEALP 100
           DGDGAVDLEGGEID L+DYVMRFQA KDVPKDASPEALP
Sbjct: 61  DGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDASPEALP 99

[Close]
BLAST of CsGy2G019110.1 vs. NCBI nr
Match: KGN62514.1 (hypothetical protein Csa_2G357860 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 6.9e-32
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0 

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
          MAMSRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG+MMSFQKAHYGV+ ADK
Sbjct: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQAP 87
          DGDG VDL   E++ L+DYVMRFQ P
Sbjct: 61 DGDGKVDLGEAEMENLIDYVMRFQTP 86

[Close]
BLAST of CsGy2G019110.1 vs. NCBI nr
Match: KGN62522.1 (hypothetical protein Csa_2G359910 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 8.2e-17
Identity = 50/90 (55.56%), Postives = 70/90 (77.78%), Query Frame = 0 

Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++ AD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGAVDLEGGEIDKLLDYVMRFQAPKDV 90
          +D DG VD +  E++KL+D V+RFQ  K V
Sbjct: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 88

[Close]
BLAST of CsGy2G019110.1 vs. NCBI nr
Match: KGN62516.1 (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 5.9e-15
Identity = 39/84 (46.43%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
          M+ + ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD+
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQ 85
          +GDG ++ E  E+DKL+DY  +FQ
Sbjct: 61 NGDGFIEEE--ELDKLVDYAQKFQ 82

[Close]
BLAST of CsGy2G019110.1 vs. NCBI nr
Match: XP_004152805.1 (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 7.7e-15
Identity = 39/83 (46.99%), Postives = 64/83 (77.11%), Query Frame = 0 

Query: 2   AMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKD 61
           A+  ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD++
Sbjct: 83  AIKSTRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADEN 142

Query: 62  GDGAVDLEGGEIDKLLDYVMRFQ 85
           GDG ++ E  E+DKL+DY  +FQ
Sbjct: 143 GDGFIEEE--ELDKLVDYAQKFQ 163

[Close]
BLAST of CsGy2G019110.1 vs. TAIR10
Match: AT2G15680.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 40.4 bits (93), Expect = 7.4e-04
Identity = 19/56 (33.93%), Postives = 33/56 (58.93%), Query Frame = 0 

Query: 14  EVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGAVDLE 70
           ++R      D++GDG+++ +EVM  L  +G   S +  +  V + D DGDG V++E
Sbjct: 121 DIRNSFWTFDLNGDGKISAEEVMSVLWKLGERCSLEDCNRMVRAVDADGDGLVNME 176

[Close]
BLAST of CsGy2G019110.1 vs. TAIR10
Match: AT4G12860.1 (EF hand calcium-binding protein family)

HSP 1 Score: 40.0 bits (92), Expect = 9.7e-04
Identity = 18/60 (30.00%), Postives = 35/60 (58.33%), Query Frame = 0 

Query: 10 LTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGAVDLE 69
          + R E+  + +  D +GDG++ K E+     S+G M+   + +  +A  D +GDGA+D++
Sbjct: 1  MDRGELSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMDVNGDGAMDID 60

[Close]
BLAST of CsGy2G019110.1 vs. Swiss-Prot
Match: sp|Q0DZP5|CML17_ORYSJ (Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica OX=39947 GN=CML17 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.8e-05
Identity = 25/69 (36.23%), Postives = 43/69 (62.32%), Query Frame = 0 

Query: 14 EVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGAVDLEGGEI 73
          E+R + E  D DGDGR+T++E+ ++L  +G  +  ++    +A  D +GDG VD++  E 
Sbjct: 8  ELRRVFELFDRDGDGRITREELTESLERLGMPVHREELAATIARIDANGDGCVDMD--EF 67

Query: 74 DKLLDYVMR 83
           +L + VMR
Sbjct: 68 TQLYETVMR 74

[Close]
BLAST of CsGy2G019110.1 vs. Swiss-Prot
Match: sp|Q5ZCK5|CML16_ORYSJ (Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica OX=39947 GN=CML16 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.4e-04
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 0 

Query: 14  EVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGAVDLE 70
           E+R   + +DVDGDGR+T  E+ + L  +G   S ++    +AS D DGDG V  E
Sbjct: 104 ELRAAFDVYDVDGDGRITAAELGKVLGRIGEGCSAEECERMIASVDVDGDGCVGFE 159

[Close]
BLAST of CsGy2G019110.1 vs. TrEMBL
Match: tr|A0A0A0LRC3|A0A0A0LRC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-43
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
           MA SRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMG MMSFQKAHYGVA ADK
Sbjct: 1   MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61  DGDGAVDLEGGEIDKLLDYVMRFQAPKDVPKDASPEALP 100
           DGDGAVDLEGGEID L+DYVMRFQA KDVPKDASPEALP
Sbjct: 61  DGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDASPEALP 99

[Close]
BLAST of CsGy2G019110.1 vs. TrEMBL
Match: tr|A0A0A0LNG3|A0A0A0LNG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357860 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.6e-32
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0 

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
          MAMSRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG+MMSFQKAHYGV+ ADK
Sbjct: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQAP 87
          DGDG VDL   E++ L+DYVMRFQ P
Sbjct: 61 DGDGKVDLGEAEMENLIDYVMRFQTP 86

[Close]
BLAST of CsGy2G019110.1 vs. TrEMBL
Match: tr|A0A0A0LP50|A0A0A0LP50_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359910 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.4e-17
Identity = 50/90 (55.56%), Postives = 70/90 (77.78%), Query Frame = 0 

Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++ AD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGAVDLEGGEIDKLLDYVMRFQAPKDV 90
          +D DG VD +  E++KL+D V+RFQ  K V
Sbjct: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 88

[Close]
BLAST of CsGy2G019110.1 vs. TrEMBL
Match: tr|A0A0A0LRC1|A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-15
Identity = 39/84 (46.43%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADK 60
          M+ + ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD+
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQ 85
          +GDG ++ E  E+DKL+DY  +FQ
Sbjct: 61 NGDGFIEEE--ELDKLVDYAQKFQ 82

[Close]
BLAST of CsGy2G019110.1 vs. TrEMBL
Match: tr|A0A0A0LKX1|A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.0e-12
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 0 

Query: 6  SQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVASADKDGDGA 65
          S+   +R+E++EI  EHD+DGDG L+  E+++A+  +G  + F KAHYG+A  D++GDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 VDLEGGEIDKLLDYVMRFQ 85
          +  +  E+DKL+DY  RFQ
Sbjct: 67 ISED--ELDKLIDYAERFQ 83

The following BLAST results are available for this feature:
BLAST of CsGy2G019110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62521.15.1e-4393.94hypothetical protein Csa_2G359900 [Cucumis sativus][more]
KGN62514.16.9e-3284.88hypothetical protein Csa_2G357860 [Cucumis sativus][more]
KGN62522.18.2e-1755.56hypothetical protein Csa_2G359910 [Cucumis sativus][more]
KGN62516.15.9e-1546.43hypothetical protein Csa_2G358870 [Cucumis sativus][more]
XP_004152805.17.7e-1546.99PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
BLAST of CsGy2G019110.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G15680.17.4e-0433.93Calcium-binding EF-hand family protein[more]
AT4G12860.19.7e-0430.00EF hand calcium-binding protein family[more]
BLAST of CsGy2G019110.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q0DZP5|CML17_ORYSJ3.8e-0536.23Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
sp|Q5ZCK5|CML16_ORYSJ5.4e-0441.07Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
BLAST of CsGy2G019110.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRC3|A0A0A0LRC3_CUCSA3.4e-4393.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359900 PE=4 SV=1[more]
tr|A0A0A0LNG3|A0A0A0LNG3_CUCSA4.6e-3284.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357860 PE=4 SV=1[more]
tr|A0A0A0LP50|A0A0A0LP50_CUCSA5.4e-1755.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359910 PE=4 SV=1[more]
tr|A0A0A0LRC1|A0A0A0LRC1_CUCSA3.9e-1546.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1[more]
tr|A0A0A0LKX1|A0A0A0LKX1_CUCSA9.0e-1245.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy2G019110CsGy2G019110gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G019110.1.exon.1CsGy2G019110.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G019110.1.CDS.1CsGy2G019110.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy2G019110.1CsGy2G019110.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 14..42
e-value: 3.1E-4
score: 30.1
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 14..42
e-value: 2.0E-6
score: 26.9
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 10..45
score: 13.593
IPR002048EF-hand domainCDDcd00051EFhcoord: 14..69
e-value: 7.13303E-9
score: 46.7721
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 1..30
e-value: 4.6E-5
score: 25.5
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 31..80
e-value: 7.1E-6
score: 27.8
NoneNo IPR availablePANTHERPTHR44455FAMILY NOT NAMEDcoord: 4..82
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 23..35
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 8..69