MELO3C010869 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010869
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Calcium binding protein
Location	chr3 : 28031898 .. 28032518 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCACCAAGCAAATCATAAAAAAAAAAAAAAAAACATACGAACATTTTGCTCCAACACTAAATCGTATCATTTCTAAGAAAATGTCTCGTGCAGCAAGCAAGCTACAGCTCTCCAGGGAGGATATAAAGGAGATTTTTAGAGAGCACGACATCGATGGAGATGGTCGATTGAGCTTGAGCGAGATGGTGAAGGCCTTCGGGTTCTTTGGCAGTATTCTTCCTTTCTACAAAGCACACTATGGAATGGCTCATGCTGATGAGAATGGCGATGGTTACATCGAAGAGGAGGAGCTCGACAAGCTCGTTGACTATGCCGAGAAGTTTCAGCACAAGAGGAAGTGCTGAGGTTATATGTAATTTTCCTCAGTCTGCTGATCATAATGTCATGACACTTCCTATTTCCATGCACTACTTTAAATATTACTCTCAAGTTTAGAAGTTTTAATGTGTTGTATAAATAAATTAAAAAAAAAAAAAAAAAATGAAGAAGGGCTAGGCTACCTAGCTAGCTGAAAGTCCTGCTTTGCCTTAGCTATCAAATGGGATGTTGTCTCTGTGTTTCAAAAAATCAAATAAACAGAAAAATAAATTCATATGGATAGTTTGCCTTGTTATTGTCA

mRNA sequence

AACCACCAAGCAAATCATAAAAAAAAAAAAAAAAACATACGAACATTTTGCTCCAACACTAAATCGTATCATTTCTAAGAAAATGTCTCGTGCAGCAAGCAAGCTACAGCTCTCCAGGGAGGATATAAAGGAGATTTTTAGAGAGCACGACATCGATGGAGATGGTCGATTGAGCTTGAGCGAGATGGTGAAGGCCTTCGGGTTCTTTGGCAGTATTCTTCCTTTCTACAAAGCACACTATGGAATGGCTCATGCTGATGAGAATGGCGATGGTTACATCGAAGAGGAGGAGCTCGACAAGCTCGTTGACTATGCCGAGAAGTTTCAGCACAAGAGGAAGTGCTGAGGTTATATGTAATTTTCCTCAGTCTGCTGATCATAATGTCATGACACTTCCTATTTCCATGCACTACTTTAAATATTACTCTCAAGTTTAGAAGTTTTAATGTGTTGTATAAATAAATTAAAAAAAAAAAAAAAAAATGAAGAAGGGCTAGGCTACCTAGCTAGCTGAAAGTCCTGCTTTGCCTTAGCTATCAAATGGGATGTTGTCTCTGTGTTTCAAAAAATCAAATAAACAGAAAAATAAATTCATATGGATAGTTTGCCTTGTTATTGTCA

Coding sequence (CDS)

ATGTCTCGTGCAGCAAGCAAGCTACAGCTCTCCAGGGAGGATATAAAGGAGATTTTTAGAGAGCACGACATCGATGGAGATGGTCGATTGAGCTTGAGCGAGATGGTGAAGGCCTTCGGGTTCTTTGGCAGTATTCTTCCTTTCTACAAAGCACACTATGGAATGGCTCATGCTGATGAGAATGGCGATGGTTACATCGAAGAGGAGGAGCTCGACAAGCTCGTTGACTATGCCGAGAAGTTTCAGCACAAGAGGAAGTGCTGA

Protein sequence

MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGYIEEEELDKLVDYAEKFQHKRKC*

Homology

[Close]

BLAST of MELO3C010869 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-39
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1  MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60
          MSRAA++LQLSREDIKEIFREHDIDGDGRLS++EMVKAFG FGSILPFYKAHYGMAHADE
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 NGDGYIEEEELDKLVDYAEKFQHKRKC 88
          NGDG+IEEEELDKLVDYA+KFQHKRKC
Sbjct: 61 NGDGFIEEEELDKLVDYAQKFQHKRKC 87

[Close]

BLAST of MELO3C010869 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-27
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 6  SKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGY 65
          SK   SRE++KEIFREHDIDGDG LS+SE++KA GF G  +PFYKAHYGMA+ DENGDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 IEEEELDKLVDYAEKFQHKRK 87
          I E+ELDKL+DYAE+FQ +R+
Sbjct: 67 ISEDELDKLIDYAERFQKRRR 87

[Close]

BLAST of MELO3C010869 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.6e-20
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 5   ASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDG 64
           AS +Q SRE IKEIF+ HD D DG L+L E+ KAF F G+ILP YKA++GM +AD N DG
Sbjct: 96  ASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDG 155

Query: 65  YIEEEELDKLVDYAEKFQHKR 86
            I ++EL+KLVDYA KF +KR
Sbjct: 156 LISKDELEKLVDYAYKFFNKR 176

[Close]

BLAST of MELO3C010869 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-18
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 1   MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60
           + R +S + LSRE IKEIF+ HD + DG L+  E+ KAF F GS+ PFYKA YGM +AD 
Sbjct: 87  LDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADA 146

Query: 61  NGDGYIEEEELDKLVDYAEKFQHKR 86
           N DG I E ELDKL+DYA K   K+
Sbjct: 147 NEDGLISEAELDKLIDYASKIIKKK 171

[Close]

BLAST of MELO3C010869 vs. TrEMBL
Match: A0A0A0LKW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-17
Identity = 42/78 (53.85%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 6  SKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGY 65
          S  +L +E++KE+FREHD +GDGRLS+ E+ +AFG FG+  P Y+A +G+  AD++GDG+
Sbjct: 11 SGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDGDGF 70

Query: 66 IEEEELDKLVDYAEKFQH 84
          I E+ELDK+VDYA K ++
Sbjct: 71 ISEQELDKVVDYAIKCKY 88

[Close]

BLAST of MELO3C010869 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1  MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60
          MSRAA++LQLSREDIKEIFREHDIDGDGRLS++EMVKAFG FGSILPFYKAHYGMAHADE
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 NGDGYIEEEELDKLVDYAEKFQHKRKC 88
          NGDG+IEEEELDKLVDYA+KFQHKRKC
Sbjct: 61 NGDGFIEEEELDKLVDYAQKFQHKRKC 87

[Close]

BLAST of MELO3C010869 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 4.3e-37
Identity = 75/83 (90.36%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 5   ASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDG 64
           +++LQLSREDIKEIFREHDIDGDGRLS++EMVKAFG FGSILPFYKAHYGMAHADENGDG
Sbjct: 86  STRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDG 145

Query: 65  YIEEEELDKLVDYAEKFQHKRKC 88
           +IEEEELDKLVDYA+KFQHKRKC
Sbjct: 146 FIEEEELDKLVDYAQKFQHKRKC 168

[Close]

BLAST of MELO3C010869 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 3.7e-17
Identity = 42/75 (56.00%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 6  SKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGY 65
          S  +L +E++KE+FREHD +GDGRLS+ E+ +AFG FG+  P Y+A +G+  AD++GDG+
Sbjct: 11 SGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDGDGF 70

Query: 66 IEEEELDKLVDYAEK 81
          I E+ELDK+VDYA K
Sbjct: 71 ISEQELDKVVDYAIK 85

HSP 2 Score: 128.6 bits (322), Expect = 5.2e-27
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 6  SKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGY 65
          SK   SRE++KEIFREHDIDGDG LS+SE++KA GF G  +PFYKAHYGMA+ DENGDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 IEEEELDKLVDYAEKFQHKRK 87
          I E+ELDKL+DYAE+FQ +R+
Sbjct: 67 ISEDELDKLIDYAERFQKRRR 87

[Close]

BLAST of MELO3C010869 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-19
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 5   ASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDG 64
           AS +Q SRE IKEIF+ HD D DG L+L E+ KAF F G+ILP YKA++GM +AD N DG
Sbjct: 96  ASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDG 155

Query: 65  YIEEEELDKLVDYAEKFQHKR 86
            I ++EL+KLVDYA KF +KR
Sbjct: 156 LISKDELEKLVDYAYKFFNKR 176

[Close]

BLAST of MELO3C010869 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 5.8e-18
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 1   MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60
           + R +S + LSRE IKEIF+ HD + DG L+  E+ KAF F GS+ PFYKA YGM +AD 
Sbjct: 87  LDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADA 146

Query: 61  NGDGYIEEEELDKLVDYAEKFQHKR 86
           N DG I E ELDKL+DYA K   K+
Sbjct: 147 NEDGLISEAELDKLIDYASKIIKKK 171

The following BLAST results are available for this feature:

BLAST of MELO3C010869 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRC1_CUCSA	1.1e-39	91.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1	[more]
A0A0A0LKX1_CUCSA	3.6e-27	70.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1	[more]
A0A0A0KIY4_CUCSA	9.6e-20	61.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1	[more]
A0A0A0KMQ1_CUCSA	4.0e-18	56.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1	[more]
A0A0A0LKW4_CUCSA	2.0e-17	53.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1	[more]

BLAST of MELO3C010869 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207397\|gb\|KGN62516.1\|	1.6e-39	91.95	hypothetical protein Csa_2G358870 [Cucumis sativus]	[more]
gi\|449470198\|ref\|XP_004152805.1\|	4.3e-37	90.36	PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus]	[more]
gi\|449470198\|ref\|XP_004152805.1\|	3.7e-17	56.00	PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus]	[more]
gi\|700194513\|gb\|KGN49690.1\|	1.4e-19	61.73	hypothetical protein Csa_5G068170 [Cucumis sativus]	[more]
gi\|700194510\|gb\|KGN49687.1\|	5.8e-18	56.47	hypothetical protein Csa_5G067410 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47367	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010869T1	MELO3C010869T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47367	MU47367	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF00036	EF-hand_1	coord: 14..39 score: 6.
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 58..75 score: 0.
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 50..78 score: 42.0coord: 14..42 score:
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 10..45 score: 14.29coord: 55..81 score: 7
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 11..77 score: 3.9
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 5..73 score: 6.27
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 59..71 score: -coord: 23..35 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 6..78 score: 2.6
None	No IPR available	PANTHER	PTHR10891:SF592	CALCIUM-BINDING PROTEIN CML38-RELATED	coord: 6..78 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010869	Csa2G358860	Cucumber (Chinese Long) v2	cumeB117
MELO3C010869	Bhi04G000312	Wax gourd	mewgoB322
MELO3C010869	Cucsa.232870	Cucumber (Gy14) v1	cgymeB389
MELO3C010869	CmaCh12G005390	Cucurbita maxima (Rimu)	cmameB156
MELO3C010869	CmoCh12G004830	Cucurbita moschata (Rifu)	cmomeB146
MELO3C010869	CsGy2G019110	Cucumber (Gy14) v2	cgybmeB102
MELO3C010869	CsaV3_2G027870	Cucumber (Chinese Long) v3	cucmeB124

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
MELO3C010869	MELO3C016745	Melon (DHL92) v3.5.1	memeB128

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010869	Silver-seed gourd	carmeB0186
MELO3C010869	Silver-seed gourd	carmeB0765
MELO3C010869	Cucumber (Chinese Long) v3	cucmeB287
MELO3C010869	Watermelon (97103) v2	mewmbB293
MELO3C010869	Watermelon (97103) v2	mewmbB302
MELO3C010869	Wax gourd	mewgoB369
MELO3C010869	Melon (DHL92) v3.5.1	memeB079
MELO3C010869	Cucumber (Gy14) v1	cgymeB187
MELO3C010869	Cucumber (Gy14) v1	cgymeB380
MELO3C010869	Cucurbita maxima (Rimu)	cmameB023
MELO3C010869	Cucurbita maxima (Rimu)	cmameB412
MELO3C010869	Cucurbita maxima (Rimu)	cmameB466
MELO3C010869	Cucurbita maxima (Rimu)	cmameB727
MELO3C010869	Cucurbita moschata (Rifu)	cmomeB012
MELO3C010869	Cucurbita moschata (Rifu)	cmomeB114
MELO3C010869	Cucurbita moschata (Rifu)	cmomeB403
MELO3C010869	Cucurbita moschata (Rifu)	cmomeB718
MELO3C010869	Wild cucumber (PI 183967)	cpimeB118
MELO3C010869	Wild cucumber (PI 183967)	cpimeB280
MELO3C010869	Wild cucumber (PI 183967)	cpimeB558
MELO3C010869	Cucumber (Chinese Long) v2	cumeB290
MELO3C010869	Cucumber (Chinese Long) v2	cumeB549
MELO3C010869	Watermelon (Charleston Gray)	mewcgB295
MELO3C010869	Watermelon (Charleston Gray)	mewcgB287
MELO3C010869	Watermelon (97103) v1	mewmB300
MELO3C010869	Watermelon (97103) v1	mewmB317
MELO3C010869	Cucurbita pepo (Zucchini)	cpemeB091
MELO3C010869	Cucurbita pepo (Zucchini)	cpemeB508
MELO3C010869	Cucurbita pepo (Zucchini)	cpemeB717
MELO3C010869	Cucurbita pepo (Zucchini)	cpemeB754
MELO3C010869	Bottle gourd (USVL1VR-Ls)	lsimeB301
MELO3C010869	Bottle gourd (USVL1VR-Ls)	lsimeB469
MELO3C010869	Cucumber (Gy14) v2	cgybmeB242
MELO3C010869	Cucumber (Gy14) v2	cgybmeB486