CsGy2G009760 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G009760
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 9287865 .. 9289132 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAAGTTAGTATATACAGTAAATATAATGTTTGCTCTCTTTTTTCTCTTAAAAAGTGAATCAATAGAACTTTTTGTGTTTTGATTCTTCTTTCTATTTTTCTACTCTTTTGTGATTTCTTAATTCAAATTTGTTTGCGAAGACGGCTCCTTAGTTAGCCGATATGATTTATCTACTCTCTGGATCAACTTGAAGGCTTTTCTTTAACATCTTTTCTCTTGTATTTTTTTACTTTGAGCTTATGTCCAATTTTTCGTGTAAGTCTTCTTTATTGTTAATTGTTAATGTATCTATTTGACATAATTAATGGAGGTACAATAGGATGTGTCAGTCGAGTTGAGATATTCTAGTATATACTCTAATCCCATTTCTTCTTAACAAAATGCTTGATCATTGAGAATAGTGCAACGCTAATTTGTGTTGATTTTTTTTTCTTCATATCAATTGTTCTAGAGTTGAACTTTTTATACTTTCAAATAACATTTTAGTCCTTATATTTTTAATTAACACGTTTCAATTAGTTCTCGTGCTTTCAATAAAATCTCAAAGTTAGTTCATGTTTAGTTCGTATGTATGCATGTCAATTCATGATTCAAATTATAACTTTTATTTTAAGGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCTTGCCCATGGAAGATTGGTCTCCTAACCAAGTTAGCCTAAATGGAAAACTTTTCTCCATTGAGTCTGAAATGTTTAGCAATATTTTAACAACATTTTCTGTCTACAATGAAGTTGATACAAGTAATGTACCTCTTCTCTTTTCCTTTATCCATTTTTATTTTACTTGAAACCAAAGTTATATATCTTGGTACATAGCTAAAACCCTTCCATCATTTGTCACAGTTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAG

mRNA sequence

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAATTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAG

Coding sequence (CDS)

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAATTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAG

Protein sequence

MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVEYSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFSAVPREEIIIREE

Homology

[Close]

BLAST of CsGy2G009760 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_2G155090 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 4.0e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 AVPREEIIIREE 133
           AVPREEIIIREE
Sbjct: 121 AVPREEIIIREE 132

[Close]

BLAST of CsGy2G009760 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_6G002310 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 4.6e-31
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 108
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 107

[Close]

BLAST of CsGy2G009760 vs. NCBI nr
Match: KGN45908.1 (hypothetical protein Csa_6G020220 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsGy2G009760 vs. NCBI nr
Match: XP_008464344.1 (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 5.4e-16
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS   +   D   LKF+PS F +IA ++ P F A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N ++ +F+ PS  I     ++T 
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsGy2G009760 vs. NCBI nr
Match: XP_022156149.1 (uncharacterized protein LOC111023105 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 6.6e-14
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSI+V N+   L ATS  TE I DE+ +K +P  FSMIA ++   F  +L +P   F  
Sbjct: 7   MFSIRVGNIGLLLHATSQLTE-IADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTA 66

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSV   H SRIS+  F  ALL+  +  SM+IH+ +  N  + +FE S     +  ++ FS
Sbjct: 67  YSVLLTHTSRISIHAFHTALLDASTSPSMTIHIHDSINRFILRFENSSHQQEKRHELIFS 126

Query: 121 AVPREE 127
            +P ++
Sbjct: 127 LLPDQD 131

[Close]

BLAST of CsGy2G009760 vs. TrEMBL
Match: tr|A0A0A0LIE0|A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.6e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 AVPREEIIIREE 133
           AVPREEIIIREE
Sbjct: 121 AVPREEIIIREE 132

[Close]

BLAST of CsGy2G009760 vs. TrEMBL
Match: tr|A0A0A0KB76|A0A0A0KB76_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.0e-31
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 108
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 107

[Close]

BLAST of CsGy2G009760 vs. TrEMBL
Match: tr|A0A0A0K902|A0A0A0K902_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.7e-16
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsGy2G009760 vs. TrEMBL
Match: tr|A0A1S3CL88|A0A1S3CL88_CUCME (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.6e-16
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS   +   D   LKF+PS F +IA ++ P F A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N ++ +F+ PS  I     ++T 
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsGy2G009760 vs. TrEMBL
Match: tr|A0A1S4E4N8|A0A1S4E4N8_CUCME (uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.8e-13
Identity = 46/107 (42.99%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +++ + DP  DATS   + I  E  +KF+P  FS+IA  + P F A L M H  F+ 
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQ-IAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFIN 62

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 108
           Y VD +H SRISL  F +ALL+G +  SM+IHL      ++ +FE S
Sbjct: 63  YKVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESS 108

The following BLAST results are available for this feature:

BLAST of CsGy2G009760 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61523.1	4.0e-67	100.00	hypothetical protein Csa_2G155090 [Cucumis sativus]	[more]
KGN45637.1	4.6e-31	66.36	hypothetical protein Csa_6G002310 [Cucumis sativus]	[more]
KGN45908.1	4.2e-16	38.58	hypothetical protein Csa_6G020220 [Cucumis sativus]	[more]
XP_008464344.1	5.4e-16	39.37	PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]	[more]
XP_022156149.1	6.6e-14	38.89	uncharacterized protein LOC111023105 [Momordica charantia]	[more]

BLAST of CsGy2G009760 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G009760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G009760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIE0\|A0A0A0LIE0_CUCSA	2.6e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
tr\|A0A0A0KB76\|A0A0A0KB76_CUCSA	3.0e-31	66.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
tr\|A0A0A0K902\|A0A0A0K902_CUCSA	2.7e-16	38.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1	[more]
tr\|A0A1S3CL88\|A0A1S3CL88_CUCME	3.6e-16	39.37	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]
tr\|A0A1S4E4N8\|A0A1S4E4N8_CUCME	4.8e-13	42.99	uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G009760.1	CsGy2G009760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.70.10.10		coord: 1..131 e-value: 4.1E-11 score: 44.6
None	No IPR available	SUPERFAMILY	SSF55979	DNA clamp	coord: 1..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G009760	Csa2G155090	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G009760	CsaV3_2G012030	Cucumber (Chinese Long) v3	cgybcucB064

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G009760	Wax gourd	cgybwgoB117
CsGy2G009760	Wax gourd	cgybwgoB123
CsGy2G009760	Cucurbita moschata (Rifu)	cgybcmoB186
CsGy2G009760	Cucurbita pepo (Zucchini)	cgybcpeB175
CsGy2G009760	Cucumber (Chinese Long) v2	cgybcuB065
CsGy2G009760	Melon (DHL92) v3.5.1	cgybmeB122
CsGy2G009760	Melon (DHL92) v3.6.1	cgybmedB120
CsGy2G009760	Wild cucumber (PI 183967)	cgybcpiB056