CsaV3_2G012030 (gene) Cucumber (Chinese Long) v3

NameCsaV3_2G012030
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 9451100 .. 9452391 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAAGTTAGTATATACAGTAAATATAATGTTTGCTCTCTTTTTTCTCTTAAAAAGTGAATCAATAGAACTTTTTGTGTTTTGATTCTTCTTTCTATTTTTCTACTCTTTTGTGATTTCTTAATTCAAATTTGTTTGCGAAGACGGCTCCTTAGTTAGCCGATATGATTTATCTACTCTCTGGATCAACTTGAAGGCTTTTCTTTAACATCTTTTCTCTTGTATTTTTTTACTTTGAGCTTATGTCCAATTTTTCGTGTAAGTCTTCTTTATTGTTAATTGTTAATGTATCTATTTGACATAATTAATGGAGGTACAATAGGATGTGTCAGTCGAGTTGAGATATTCTAGTATATACTCTAATCCCATTTCTTCTTAACAAAATGCTTGATCATTGAGAATAGTGCAACGCTAATTTGTGTTGATTTTTTTTTCTTCATATCAATTGTTCTAGAGTTGAACTTTTTATACTTTCAAATAACATTTTAGTCCTTATATTTTTAATTAACACGTTTCAATTAGTTCTCGTGCTTTCAATAAAATCTCAAAGTTAGTTCATGTTTAGTTCGTATGTATGCATGTCAATTCATGATTCAAATTATAACTTTTATTTTAAGGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCTTGCCCATGGAAGATTGGTCTCCTAACCAAGTTAGCCTAAATGGAAAACTTTTCTCCATTGAGTCTGAAATGTTTAGCAATATTTTAACAACATTTTCTGTCTACAATGAAGTTGATACAAGTAATGTACCTCTTCTCTTTTCCTTTATCCATTTTTATTTTACTTGAAACCAAAGTTATATATCTTGGTACATAGCTAAAACCCTTCCATCATTTGTCACAGTTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

mRNA sequence

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAATTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

Coding sequence (CDS)

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAATTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

Protein sequence

MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVEYSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFSAVPREEIIIREEVCFVKFV
BLAST of CsaV3_2G012030 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_2G155090 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 9.7e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 AVPREEIIIREEVCFVKFV 140
           AVPREEIIIREEVCFVKFV
Sbjct: 121 AVPREEIIIREEVCFVKFV 139

BLAST of CsaV3_2G012030 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_6G002310 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-31
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 108
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 107

BLAST of CsaV3_2G012030 vs. NCBI nr
Match: KGN45908.1 (hypothetical protein Csa_6G020220 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 3.4e-16
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 0

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

BLAST of CsaV3_2G012030 vs. NCBI nr
Match: XP_008464344.1 (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 0

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS   +   D   LKF+PS F +IA ++ P F A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N ++ +F+ PS  I     ++T 
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

BLAST of CsaV3_2G012030 vs. NCBI nr
Match: XP_022156149.1 (uncharacterized protein LOC111023105 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 4.1e-14
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = 0

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSI+V N+   L ATS  TE I DE+ +K +P  FSMIA ++   F  +L +P   F  
Sbjct: 7   MFSIRVGNIGLLLHATSQLTE-IADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTA 66

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSV   H SRIS+  F  ALL+  +  SM+IH+ +  N  + +FE S     +  ++ FS
Sbjct: 67  YSVLLTHTSRISIHAFHTALLDASTSPSMTIHIHDSINRFILRFENSSHQQEKRHELIFS 126

Query: 121 AVPREE 127
            +P ++
Sbjct: 127 LLPDQD 131

BLAST of CsaV3_2G012030 vs. TrEMBL
Match: tr|A0A0A0LIE0|A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 6.4e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 AVPREEIIIREEVCFVKFV 140
           AVPREEIIIREEVCFVKFV
Sbjct: 121 AVPREEIIIREEVCFVKFV 139

BLAST of CsaV3_2G012030 vs. TrEMBL
Match: tr|A0A0A0KB76|A0A0A0KB76_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.2e-31
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 108
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 107

BLAST of CsaV3_2G012030 vs. TrEMBL
Match: tr|A0A0A0K902|A0A0A0K902_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.2e-16
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 0

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

BLAST of CsaV3_2G012030 vs. TrEMBL
Match: tr|A0A1S3CL88|A0A1S3CL88_CUCME (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 0

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS   +   D   LKF+PS F +IA ++ P F A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N ++ +F+ PS  I     ++T 
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

BLAST of CsaV3_2G012030 vs. TrEMBL
Match: tr|A0A1S4E4N8|A0A1S4E4N8_CUCME (uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 0

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +++ + DP  DATS   + I  E  +KF+P  FS+IA  + P F A L M H  F+ 
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQ-IAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFIN 62

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           Y VD +H SRISL  F +ALL+G +  SM+IHL      ++ +FE S        +++ +
Sbjct: 63  YKVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSHAPKVHHELSLT 122

Query: 121 AVPREEIIIREEVCFVKF 139
               E++    EV + KF
Sbjct: 123 PSQEEDL---GEVDYAKF 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61523.19.7e-72100.00hypothetical protein Csa_2G155090 [Cucumis sativus][more]
KGN45637.14.8e-3166.36hypothetical protein Csa_6G002310 [Cucumis sativus][more]
KGN45908.13.4e-1638.58hypothetical protein Csa_6G020220 [Cucumis sativus][more]
XP_008464344.14.4e-1639.37PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo][more]
XP_022156149.14.1e-1438.89uncharacterized protein LOC111023105 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LIE0|A0A0A0LIE0_CUCSA6.4e-72100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1[more]
tr|A0A0A0KB76|A0A0A0KB76_CUCSA3.2e-3166.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1[more]
tr|A0A0A0K902|A0A0A0K902_CUCSA2.2e-1638.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1[more]
tr|A0A1S3CL88|A0A1S3CL88_CUCME2.9e-1639.37uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=... [more]
tr|A0A1S4E4N8|A0A1S4E4N8_CUCME2.3e-1336.96uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G012030.1CsaV3_2G012030.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.70.10.10coord: 1..138
e-value: 4.9E-11
score: 44.4
NoneNo IPR availableSUPERFAMILYSSF55979DNA clampcoord: 1..109

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G012030CsGy2G009760Cucumber (Gy14) v2cgybcucB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G012030Cucumber (Gy14) v1cgycucB309
CsaV3_2G012030Wild cucumber (PI 183967)cpicucB080
CsaV3_2G012030Melon (DHL92) v3.5.1cucmeB143
CsaV3_2G012030Melon (DHL92) v3.6.1cucmedB136