Csa2G155090 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G155090
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 9159942 .. 9161233 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAAGTTAGTATATACAGTAAATATAATGTTTGCTCTCTTTTTTCTCTTAAAAAGTGAATCAATAGAACTTTTTGTGTTTTGATTCTTCTTTCTATTTTTCTACTCTTTTGTGATTTCTTAATTCAAATTTGTTTGCGAAGACGGCTCCTTAGTTAGCCGATATGATTTATCTACTCTCTGGATCAACTTGAAGGCTTTTCTTTAACATCTTTTCTCTTGTATTTTTTTACTTTGAGCTTATGTCCAATTTTTCGTGTAAGTCTTCTTTATTGTTAATTGTTAATGTATCTATTTGACATAATTAATGGAGGTACAATAGGATGTGTCAGTCGAGTTGAGATATTCTAGTATATACTCTAATCCCATTTCTTCTTAACAAAATGCTTGATCATTGAGAATAGTGCAACGCTAATTTGTGTTGATTTTTTTTTCTTCATATCAATTGTTCTAGAGTTGAACTTTTTATACTTTCAAATAACATTTTAGTCCTTATATTTTTAATTAACACGTTTCAATTAGTTCTCGTGCTTTCAATAAAATCTCAAAGTTAGTTCATGTTTAGTTCGTATGTATGCATGTCAATTCATGATTCAAATTATAACTTTTATTTTAAGGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCTTGCCCATGGAAGATTGGTCTCCTAACCAAGTTAGCCTAAATGGAAAACTTTTCTCCATTGAGTCTGAAATGTTTAGCAATATTTTAACAACATTTTCTGTCTACAATGAAGTTGATACAAGTAATGTACCTCTTCTCTTTTCCTTTATCCATTTTTATTTTACTTGAAACCAAAGTTATATATCTTGGTACATAGCTAAAACCCTTCCATCATTTGTCACAGTTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

mRNA sequence

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAATTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

Coding sequence (CDS)

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAATTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

Protein sequence

MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVEYSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFSAVPREEIIIREEVCFVKFV*
Homology
[Close]
BLAST of Csa2G155090 vs. TrEMBL
Match: A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1 

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 AVPREEIIIREEVCFVKFV 140
           AVPREEIIIREEVCFVKFV
Sbjct: 121 AVPREEIIIREEVCFVKFV 139

[Close]
BLAST of Csa2G155090 vs. TrEMBL
Match: A0A0A0KB76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.8e-32
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 1 

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 108
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 107

[Close]
BLAST of Csa2G155090 vs. TrEMBL
Match: A0A0A0K902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-17
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 1 

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

[Close]
BLAST of Csa2G155090 vs. TrEMBL
Match: A0A0A0K9W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002290 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.4e-11
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 1 

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+   +P LD+T     + N+   +KF+P    +I   + P F A L +    F  
Sbjct: 1   MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTN 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE 106
           +SVD  H S++SL  F +A+L+G  +S+MSIHL +  N ++ +F+
Sbjct: 61  FSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQMILRFD 105

[Close]
BLAST of Csa2G155090 vs. NCBI nr
Match: gi|700206404|gb|KGN61523.1| (hypothetical protein Csa_2G155090 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1 

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 AVPREEIIIREEVCFVKFV 140
           AVPREEIIIREEVCFVKFV
Sbjct: 121 AVPREEIIIREEVCFVKFV 139

[Close]
BLAST of Csa2G155090 vs. NCBI nr
Match: gi|700190433|gb|KGN45637.1| (hypothetical protein Csa_6G002310 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-31
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 1 

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 108
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 107

[Close]
BLAST of Csa2G155090 vs. NCBI nr
Match: gi|659131763|ref|XP_008465845.1| (PREDICTED: uncharacterized protein LOC103503439 [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 1 

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D++ PFL+ T LF E  + EICLKF  ST S+I RYQ P F  M+ MP PLF E
Sbjct: 1   MFSIKIDDIYPFLETTILFVELTHKEICLKFLQSTLSIIVRYQSPIFIVMMSMPQPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE---PSILITSRGSQI 120
           YSVDRNHIS +SL    NAL++G+++++++I + E QN I   FE   PS L  +R  ++
Sbjct: 61  YSVDRNHISIVSLPPLHNALVDGETFATLNISIEEEQNKIFLTFEASSPSTLPLNR--EL 120

Query: 121 TFSAVPREE 127
           TF  VP E+
Sbjct: 121 TF-VVPMED 126

[Close]
BLAST of Csa2G155090 vs. NCBI nr
Match: gi|700190704|gb|KGN45908.1| (hypothetical protein Csa_6G020220 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 1 

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

[Close]
BLAST of Csa2G155090 vs. NCBI nr
Match: gi|659128729|ref|XP_008464344.1| (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 1 

Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS   +   D   LKF+PS F +IA ++ P F A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N ++ +F+ PS  I     ++T 
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SAVPREE 127
           S    E+
Sbjct: 121 SPPQAED 127

The following BLAST results are available for this feature:
BLAST of Csa2G155090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIE0_CUCSA1.2e-72100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1[more]
A0A0A0KB76_CUCSA7.8e-3266.36Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002310 PE=4 SV=1[more]
A0A0A0K902_CUCSA7.1e-1738.58Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1[more]
A0A0A0K9W4_CUCSA3.4e-1134.29Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002290 PE=4 SV=1[more]
BLAST of Csa2G155090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206404|gb|KGN61523.1|1.7e-72100.00hypothetical protein Csa_2G155090 [Cucumis sativus][more]
gi|700190433|gb|KGN45637.1|1.1e-3166.36hypothetical protein Csa_6G002310 [Cucumis sativus][more]
gi|659131763|ref|XP_008465845.1|1.6e-2551.16PREDICTED: uncharacterized protein LOC103503439 [Cucumis melo][more]
gi|700190704|gb|KGN45908.1|1.0e-1638.58hypothetical protein Csa_6G020220 [Cucumis sativus][more]
gi|659128729|ref|XP_008464344.1|1.3e-1639.37PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G155090.1Csa2G155090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.70.10.10coord: 1..129
score: 9.
NoneNo IPR availableunknownSSF55979DNA clampcoord: 1..109
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G155090CsGy2G009760Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G155090Melon (DHL92) v3.5.1cumeB131
Csa2G155090Melon (DHL92) v3.6.1cumedB134
Csa2G155090Cucumber (Gy14) v1cgycuB296