Cp4.1LG16g00390 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g00390
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG16 : 217782 .. 218195 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTGTTGTTGGAGAATGGATGACAAGTCGGTTCCTTATAATCTCCGACTGCGGAAGGATCACAAGGCGTCGGCTGCAACGGAGGGTTCGAAAGGTCAAAAGCAAGCAGAAAGGGAGTTTCAGGAAAAGGGAGGCGAAGAAGTATTATCATTATATGGATGTGACAAATGTGGATGCTCTTTTGATCTTCAACCCTCTCTTCGTTCGCACCATTGCAAAGTAATTATTATTCTTTTTCTTTTTCTTTTTCTTTTATTCACTTATTTATTTTATTGAAACAATTCATTTGTGCAGAACAATAATAAAAGTGAGAAAGAGGCGATGGAAAACGAAGTGGATGAAGGGTTGGGGAAGGACAAATCTCTCAGAAAAAGAACCAGGAAGGGAATACCCACACGGGCTCCTTTCTTCTAG

mRNA sequence

GGGTGTTGTTGGAGAATGGATGACAAGTCGGTTCCTTATAATCTCCGACTGCGGAAGGATCACAAGGCGTCGGCTGCAACGGAGGGTTCGAAAGGTCAAAAGCAAGCAGAAAGGGAGTTTCAGGAAAAGGGAGGCGAAGAAGTATTATCATTATATGGATGTGACAAATGTGGATGCTCTTTTGATCTTCAACCCTCTCTTCGTTCGCACCATTGCAAAAACAATAATAAAAGTGAGAAAGAGGCGATGGAAAACGAAGTGGATGAAGGGTTGGGGAAGGACAAATCTCTCAGAAAAAGAACCAGGAAGGGAATACCCACACGGGCTCCTTTCTTCTAG

Coding sequence (CDS)

ATGGATGACAAGTCGGTTCCTTATAATCTCCGACTGCGGAAGGATCACAAGGCGTCGGCTGCAACGGAGGGTTCGAAAGGTCAAAAGCAAGCAGAAAGGGAGTTTCAGGAAAAGGGAGGCGAAGAAGTATTATCATTATATGGATGTGACAAATGTGGATGCTCTTTTGATCTTCAACCCTCTCTTCGTTCGCACCATTGCAAAAACAATAATAAAAGTGAGAAAGAGGCGATGGAAAACGAAGTGGATGAAGGGTTGGGGAAGGACAAATCTCTCAGAAAAAGAACCAGGAAGGGAATACCCACACGGGCTCCTTTCTTCTAG

Protein sequence

MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVDEGLGKDKSLRKRTRKGIPTRAPFF
Homology
[Close]
BLAST of Cp4.1LG16g00390 vs. TrEMBL
Match: A0A0A0LQ06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287130 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.4e-26
Identity = 66/113 (58.41%), Postives = 85/113 (75.22%), Query Frame = 1 

Query: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60
           MDDKS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60

Query: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVDEGLGKDKSLRKRTRKGIPTRAPFF 108
           SFD++ SL SHHCK  NK+E+EAME E    LG++KS RK++RKG+P RAPFF
Sbjct: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPFF 110

[Close]
BLAST of Cp4.1LG16g00390 vs. NCBI nr
Match: gi|700206912|gb|KGN62031.1| (hypothetical protein Csa_2G287130 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 9.2e-26
Identity = 66/113 (58.41%), Postives = 85/113 (75.22%), Query Frame = 1 

Query: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60
           MDDKS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60

Query: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVDEGLGKDKSLRKRTRKGIPTRAPFF 108
           SFD++ SL SHHCK  NK+E+EAME E    LG++KS RK++RKG+P RAPFF
Sbjct: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPFF 110

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g00390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g00390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ06_CUCSA6.4e-2658.41Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287130 PE=4 SV=1[more]
BLAST of Cp4.1LG16g00390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g00390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206912|gb|KGN62031.1|9.2e-2658.41hypothetical protein Csa_2G287130 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g00390.1Cp4.1LG16g00390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 47..76
score: 9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g00390CmaCh20G011430Cucurbita maxima (Rimu)cmacpeB565
Cp4.1LG16g00390Csa2G287130Cucumber (Chinese Long) v2cpecuB268
Cp4.1LG16g00390ClCG02G012990Watermelon (Charleston Gray)cpewcgB257
Cp4.1LG16g00390CSPI02G14520Wild cucumber (PI 183967)cpecpiB270
Cp4.1LG16g00390Lsi10G005880Bottle gourd (USVL1VR-Ls)cpelsiB223
Cp4.1LG16g00390CsaV3_2G017080Cucumber (Chinese Long) v3cpecucB0335
Cp4.1LG16g00390CsGy2G014470Cucumber (Gy14) v2cgybcpeB194
Cp4.1LG16g00390Carg20928Silver-seed gourdcarcpeB1378
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g00390Cucumber (Gy14) v2cgybcpeB774
Cp4.1LG16g00390Melon (DHL92) v3.6.1cpemedB330
Cp4.1LG16g00390Silver-seed gourdcarcpeB0560
Cp4.1LG16g00390Silver-seed gourdcarcpeB1132
Cp4.1LG16g00390Silver-seed gourdcarcpeB1472
Cp4.1LG16g00390Cucumber (Chinese Long) v3cpecucB0366
Cp4.1LG16g00390Wax gourdcpewgoB0356
Cp4.1LG16g00390Cucurbita pepo (Zucchini)cpecpeB068
Cp4.1LG16g00390Cucurbita pepo (Zucchini)cpecpeB292
Cp4.1LG16g00390Cucurbita pepo (Zucchini)cpecpeB316
Cp4.1LG16g00390Cucurbita pepo (Zucchini)cpecpeB322
Cp4.1LG16g00390Cucumber (Gy14) v1cgycpeB0971
Cp4.1LG16g00390Cucurbita maxima (Rimu)cmacpeB623
Cp4.1LG16g00390Cucurbita maxima (Rimu)cmacpeB660
Cp4.1LG16g00390Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g00390Cucurbita moschata (Rifu)cmocpeB573
Cp4.1LG16g00390Watermelon (97103) v1cpewmB284
Cp4.1LG16g00390Watermelon (97103) v1cpewmB290
Cp4.1LG16g00390Melon (DHL92) v3.5.1cpemeB259