CSPI02G14520 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G14520
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 14312675 .. 14313442 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACAAATCTCTTCCTTATAACCTTCGACTAAGGAAAGATCACAAGTCTTCTTCTCCAACTGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGTTTCATTATCATTATTCTTCTTTCTTTATTCTTTATTATTGTTTGAGTTATTATTAATTGTTAATATCAAATTTAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGCTCACACCATTGTAAAGTAAGCTTTTTTTTTTAGTTTTTAATTTTTTTGAAATTTTGATATATTGATAAGTTTATTATAATAAATTTTTTTAGCAGAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGGAATTTTGGGAGAGAACAAATCTTTCAGAAAAAAAAGCAGGAAGGGGGTACCAAGAAGAGCACCTTTCTTTTAGATTTTTTTTTTTACCTTTTGTCTTTAAATCATAATATTGTTGTTATTGAATTTTTTTTTAGGGTTTTTAGATGTTGTGGATATAAAATATCATACTTAGAGTTAATATCTCAATTTTGAAATACTTATAAATATTGGAAAGTTTTGATGAAGGATGGTAGTCCATTAGTTGTTCATCATCTAACCCCAATATTGTTTGTATTTGTTAAATGGGAGATTAGGGTTTGGAGTTTTTTTGTTTTTTTTTTTCTTTTCAACTTGAAGTTTTGCATAGGAGAC

mRNA sequence

ATGGATGACAAATCTCTTCCTTATAACCTTCGACTAAGGAAAGATCACAAGTCTTCTTCTCCAACTGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGCTCACACCATTGTAAAAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGGAATTTTGGGAGAGAACAAATCTTTCAGAAAAAAAAGCAGGAAGGGGTTTTGCATAGGAGAC

Coding sequence (CDS)

ATGGATGACAAATCTCTTCCTTATAACCTTCGACTAAGGAAAGATCACAAGTCTTCTTCTCCAACTGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGCTCACACCATTGTAAAAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGGAATTTTGGGAGAGAACAAATCTTTCAGAAAAAAAAGCAGGAAGGGGTTTTGCATAGGAGAC

Homology

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BLAST of CSPI02G14520 vs. TrEMBL
Match: A0A0A0LQ06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287130 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60
           MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKG 103
           FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKG
Sbjct: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKG 102

[Close]

BLAST of CSPI02G14520 vs. NCBI nr
Match: gi|700206912|gb|KGN62031.1| (hypothetical protein Csa_2G287130 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60
           MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKG 103
           FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKG
Sbjct: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKG 102

The following BLAST results are available for this feature:

BLAST of CSPI02G14520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G14520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ06_CUCSA	2.0e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287130 PE=4 SV=1	[more]

BLAST of CSPI02G14520 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G14520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206912\|gb\|KGN62031.1\|	2.8e-51	100.00	hypothetical protein Csa_2G287130 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G14520.1	CSPI02G14520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 52..79 score: 10

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G14520	Csa2G287130	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G14520	ClCG02G012990	Watermelon (Charleston Gray)	cpiwcgB125
CSPI02G14520	Lsi10G005880	Bottle gourd (USVL1VR-Ls)	cpilsiB091
CSPI02G14520	CsaV3_2G017080	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G14520	Cla97C02G038660	Watermelon (97103) v2	cpiwmbB117
CSPI02G14520	CmaCh20G011430	Cucurbita maxima (Rimu)	cmacpiB548
CSPI02G14520	Cp4.1LG16g00390	Cucurbita pepo (Zucchini)	cpecpiB270
CSPI02G14520	CsGy2G014470	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G14520	Carg20928	Silver-seed gourd	carcpiB1030

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G14520	Melon (DHL92) v3.6.1	cpimedB083
CSPI02G14520	Silver-seed gourd	carcpiB1093
CSPI02G14520	Wax gourd	cpiwgoB172
CSPI02G14520	Wax gourd	cpiwgoB180
CSPI02G14520	Wax gourd	cpiwgoB185
CSPI02G14520	Cucumber (Gy14) v1	cgycpiB542
CSPI02G14520	Cucurbita maxima (Rimu)	cmacpiB587
CSPI02G14520	Cucurbita moschata (Rifu)	cmocpiB537
CSPI02G14520	Cucurbita moschata (Rifu)	cmocpiB576
CSPI02G14520	Melon (DHL92) v3.5.1	cpimeB098
CSPI02G14520	Melon (DHL92) v3.5.1	cpimeB155
CSPI02G14520	Watermelon (97103) v1	cpiwmB142
CSPI02G14520	Cucurbita pepo (Zucchini)	cpecpiB712