Carg20928 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20928
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_141 : 577826 .. 578236 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGAAGTCGGTTCCTTATAATCTCCGACTGCGGAAGGATCACAAGGCGTCGGCTGCAACGGAGGGTTCGAAAGGTCAAAAGCAAGCAGAAAGGGAGTTTCAGGAAAAGGGAGGCGAAGAAGTATTATCATTATATGGATGTGACAAATGTGGATGCTCTTTTGATCTTCAACCCTCTCTTCGTTCCCACCATTGCAAAGTAATTACTATTGTTATTATTATTCTTTTATTCATTTATTTATTTTATTGAAACAATTCATCTGTGCAGAACAATAACAAAAGTGAGAAAGAGGCAATGGAAAATGAAGTGGAGGAAGGGTTGGGGAAGGACAAATCTCTCAGAAAAAGAACCAGGAAGGGAATACCCACACGGGCTCCTTTCTCCTAGATTACTATTATTTTTTTT

mRNA sequence

ATGGATGAGAAGTCGGTTCCTTATAATCTCCGACTGCGGAAGGATCACAAGGCGTCGGCTGCAACGGAGGGTTCGAAAGGTCAAAAGCAAGCAGAAAGGGAGTTTCAGGAAAAGGGAGGCGAAGAAGTATTATCATTATATGGATGTGACAAATGTGGATGCTCTTTTGATCTTCAACCCTCTCTTCGTTCCCACCATTGCAAAAACAATAACAAAAGTGAGAAAGAGGCAATGGAAAATGAAGTGGAGGAAGGGTTGGGGAAGGACAAATCTCTCAGAAAAAGAACCAGGAAGGGAATACCCACACGGGCTCCTTTCTCCTAGATTACTATTATTTTTTTT

Coding sequence (CDS)

ATGGATGAGAAGTCGGTTCCTTATAATCTCCGACTGCGGAAGGATCACAAGGCGTCGGCTGCAACGGAGGGTTCGAAAGGTCAAAAGCAAGCAGAAAGGGAGTTTCAGGAAAAGGGAGGCGAAGAAGTATTATCATTATATGGATGTGACAAATGTGGATGCTCTTTTGATCTTCAACCCTCTCTTCGTTCCCACCATTGCAAAAACAATAACAAAAGTGAGAAAGAGGCAATGGAAAATGAAGTGGAGGAAGGGTTGGGGAAGGACAAATCTCTCAGAAAAAGAACCAGGAAGGGAATACCCACACGGGCTCCTTTCTCCTAG

Protein sequence

MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTRAPFS

Homology

[Close]

BLAST of Carg20928 vs. NCBI nr
Match: XP_023511836.1 (uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-51
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQP 60
           MD+KSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQP
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQP 60

Query: 61  SLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTRAPF 107
           SLRSHHCKNNNKSEKEAMENEV+EGLGKDKSLRKRTRKGIPTRAPF
Sbjct: 61  SLRSHHCKNNNKSEKEAMENEVDEGLGKDKSLRKRTRKGIPTRAPF 106

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BLAST of Carg20928 vs. NCBI nr
Match: XP_022928048.1 (uncharacterized protein LOC111434950 [Cucurbita moschata])

HSP 1 Score: 205.7 bits (522), Expect = 7.9e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQP 60
           MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQP
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQP 60

Query: 61  SLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTRAPF 107
           SLRSHHCK+NNKSE+EA ENEVEE LGKDKSLRKRTRKGIPTRAPF
Sbjct: 61  SLRSHHCKSNNKSEREATENEVEEALGKDKSLRKRTRKGIPTRAPF 106

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BLAST of Carg20928 vs. NCBI nr
Match: KGN62031.1 (hypothetical protein Csa_2G287130 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 5.7e-24
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60

Query: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTRAPF 107
           SFD++ SL SHHCK  NK+E+EAME E    LG++KS RK++RKG+P RAPF
Sbjct: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPF 109

[Close]

BLAST of Carg20928 vs. NCBI nr
Match: XP_022149553.1 (uncharacterized protein LOC111017959 [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 4.5e-21
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQP 60
           MD+KS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC F ++ 
Sbjct: 1   MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEIGLEQRCEKCGCRFGIEI 60

Query: 61  SLRSHHCKNNNKSEKEAMENEV-----EEGLGKDKSLRKRTRKGIPTRAP 106
           SL SHHCK  NK  +E MEN+V     ++     KS RKR+RKGIPTRAP
Sbjct: 61  SLHSHHCKCKNKMSEEGMENQVVPEMLDQNNNNKKSFRKRSRKGIPTRAP 107

[Close]

BLAST of Carg20928 vs. TrEMBL
Match: tr|A0A0A0LQ06|A0A0A0LQ06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60

Query: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTRAPF 107
           SFD++ SL SHHCK  NK+E+EAME E    LG++KS RK++RKG+P RAPF
Sbjct: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPF 109

The following BLAST results are available for this feature:

BLAST of Carg20928 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511836.1	1.9e-51	98.11	uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo]	[more]
XP_022928048.1	7.9e-50	96.23	uncharacterized protein LOC111434950 [Cucurbita moschata]	[more]
KGN62031.1	5.7e-24	57.14	hypothetical protein Csa_2G287130 [Cucumis sativus]	[more]
XP_022149553.1	4.5e-21	56.36	uncharacterized protein LOC111017959 [Momordica charantia]	[more]

BLAST of Carg20928 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg20928 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20928 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQ06\|A0A0A0LQ06_CUCSA	3.8e-24	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20928-RA	Carg20928-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..91
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 47..76 score: 9.099

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20928	Csa2G287130	Cucumber (Chinese Long) v2	carcuB1006
Carg20928	ClCG02G012990	Watermelon (Charleston Gray)	carwcgB0967
Carg20928	CSPI02G14520	Wild cucumber (PI 183967)	carcpiB1030
Carg20928	CmaCh20G011430	Cucurbita maxima (Rimu)	carcmaB1374
Carg20928	Cp4.1LG16g00390	Cucurbita pepo (Zucchini)	carcpeB1378
Carg20928	CsGy2G014470	Cucumber (Gy14) v2	carcgybB0979
Carg20928	CsaV3_2G017080	Cucumber (Chinese Long) v3	carcucB1036
Carg20928	Cla97C02G038660	Watermelon (97103) v2	carwmbB1045

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20928	Cucurbita maxima (Rimu)	carcmaB1371
Carg20928	Watermelon (97103) v2	carwmbB1047
Carg20928	Wax gourd	carwgoB1162