Lsi01G020210 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G020210
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description50S ribosomal protein L18, putative
Locationchr01 : 27642100 .. 27642444 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAAGTGATCCACTCTGAAACAGCCACTGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTTCAAAGATTGGAAAATTGTTGGGAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCCGTGAGGGAAGCAGGTATTAAGCTACTTTGA

mRNA sequence

ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAAGTGATCCACTCTGAAACAGCCACTGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTTCAAAGATTGGAAAATTGTTGGGAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCCGTGAGGGAAGCAGGTATTAAGCTACTTTGA

Coding sequence (CDS)

ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAAGTGATCCACTCTGAAACAGCCACTGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTTCAAAGATTGGAAAATTGTTGGGAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCCGTGAGGGAAGCAGGTATTAAGCTACTTTGA

Protein sequence

MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Homology
[Close]
BLAST of Lsi01G020210 vs. Swiss-Prot
Match: RL18_AZOC5 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=rplR PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-10
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLK 80
           L +H T+K + AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ AV V  +    YHG+VKA+ +  RE G++
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]
BLAST of Lsi01G020210 vs. Swiss-Prot
Match: RL18_VIBPR (50S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-10
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1 

Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLK 80
           L +H T + V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+  V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]
BLAST of Lsi01G020210 vs. Swiss-Prot
Match: RL18_VIBTL (50S ribosomal protein L18 OS=Vibrio tasmaniensis (strain LGP32) GN=rplR PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.8e-10
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1 

Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLK 80
           L +H T + V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVISANGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ +V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVASVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]
BLAST of Lsi01G020210 vs. Swiss-Prot
Match: RL18_SHEB2 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS223) GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1 

Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLK 80
           L +H T + + AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + K
Sbjct: 26  LVVHRTPRHIYAQVINPE-AQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ +V    +   KYHG+V A+ D+ REAG+K
Sbjct: 86  GVTSVAFD-RSGFKYHGRVAALADAAREAGLK 115

[Close]
BLAST of Lsi01G020210 vs. Swiss-Prot
Match: RL18_SHEB5 (50S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1 

Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIGKLLGERLLLK 80
           L +H T + + AQVI+ E A V +AAS+ EKA++  ++ST +V AA  +GK + ER + K
Sbjct: 26  LVVHRTPRHIYAQVINPE-AQVLAAASTVEKAVKELLKSTGNVDAAKAVGKFVAERAIEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ +V    +   KYHG+V A+ D+ REAG+K
Sbjct: 86  GVTSVAFD-RSGFKYHGRVAALADAAREAGLK 115

[Close]
BLAST of Lsi01G020210 vs. TrEMBL
Match: A0A0A0L0Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437000 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.0e-50
Identity = 108/114 (94.74%), Postives = 113/114 (99.12%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]
BLAST of Lsi01G020210 vs. TrEMBL
Match: A0A059BKV1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00277 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.5e-45
Identity = 99/114 (86.84%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVI PP KPPR+  +LKPYVLKMHFTNKFVSAQVIHS TATVAS+ASSQEKALR SM+ST
Sbjct: 1   MVILPPAKPPRIINFLKPYVLKMHFTNKFVSAQVIHSPTATVASSASSQEKALRPSMDST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGK+LGERLLLKGIPAV VHLKREQKYHGKVKAV+DSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKILGERLLLKGIPAVAVHLKREQKYHGKVKAVIDSVREAGVKLL 114

[Close]
BLAST of Lsi01G020210 vs. TrEMBL
Match: A0A0B2SGL2_GLYSO (50S ribosomal protein L18 OS=Glycine soja GN=glysoja_026002 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 8.5e-45
Identity = 96/114 (84.21%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+TQ+LKPYVLKMHFTNK+VSAQVIH+ TATVAS+ASSQEKALRSS+E++
Sbjct: 1   MVIPPPVRPPRITQFLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETS 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGK+L ERLLLK IPAV VHLKREQKYHGKVKAV+DS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKILAERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

[Close]
BLAST of Lsi01G020210 vs. TrEMBL
Match: I1JJR9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G307100 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 8.5e-45
Identity = 96/114 (84.21%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+TQ+LKPYVLKMHFTNK+VSAQVIH+ TATVAS+ASSQEKALRSS+E++
Sbjct: 1   MVIPPPVRPPRITQFLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETS 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGK+L ERLLLK IPAV VHLKREQKYHGKVKAV+DS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKILAERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

[Close]
BLAST of Lsi01G020210 vs. TrEMBL
Match: A0A061F2F1_THECC (Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_026668 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-44
Identity = 98/114 (85.96%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+T++LKPYVLKMHFTNK+VSAQVIHS TATVAS+ASSQEKALR+SMEST
Sbjct: 123 MVIPPPVRPPRITKFLKPYVLKMHFTNKYVSAQVIHSPTATVASSASSQEKALRASMEST 182

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERLLLK IPAV V LKREQKYHGKVKAV+DS++EAG+KLL
Sbjct: 183 RDVAAAAKIGKLLGERLLLKEIPAVSVFLKREQKYHGKVKAVIDSLKEAGVKLL 236

[Close]
BLAST of Lsi01G020210 vs. TAIR10
Match: AT5G27820.1 (AT5G27820.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 174.9 bits (442), Expect = 2.9e-44
Identity = 91/114 (79.82%), Postives = 103/114 (90.35%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPP V+PPRL  YLKPYVLKMHFTNKFV AQVIHS TATVA +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAASKIGK+LGERLL+K IPAV + +K+EQ+YHGKVKAV+DSVREAG+KLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]
BLAST of Lsi01G020210 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 33/101 (32.67%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 11  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIG 70
           R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +R+++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           KL+ ER +   + AV    ++ ++  GK+  V+D+++E GI
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]
BLAST of Lsi01G020210 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-07
Identity = 29/101 (28.71%), Postives = 53/101 (52.48%), Query Frame = 1 

Query: 11  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAASKIG 70
           R   Y++P+ L +  + +FVSA + H  T    + A +  K +++ + S  D+ A   IG
Sbjct: 127 RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 186

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           ++L ER     +       + + K+ GK++AVV S+ + GI
Sbjct: 187 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]
BLAST of Lsi01G020210 vs. NCBI nr
Match: gi|659125466|ref|XP_008462699.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 6.7e-51
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]
BLAST of Lsi01G020210 vs. NCBI nr
Match: gi|449453185|ref|XP_004144339.1| (PREDICTED: 50S ribosomal protein L18, cyanelle [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 4.3e-50
Identity = 108/114 (94.74%), Postives = 113/114 (99.12%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]
BLAST of Lsi01G020210 vs. NCBI nr
Match: gi|702361554|ref|XP_010059974.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Eucalyptus grandis])

HSP 1 Score: 188.0 bits (476), Expect = 9.4e-45
Identity = 99/114 (86.84%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVI PP KPPR+  +LKPYVLKMHFTNKFVSAQVIHS TATVAS+ASSQEKALR SM+ST
Sbjct: 1   MVILPPAKPPRIINFLKPYVLKMHFTNKFVSAQVIHSPTATVASSASSQEKALRPSMDST 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGK+LGERLLLKGIPAV VHLKREQKYHGKVKAV+DSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKILGERLLLKGIPAVAVHLKREQKYHGKVKAVIDSVREAGVKLL 114

[Close]
BLAST of Lsi01G020210 vs. NCBI nr
Match: gi|571437857|ref|XP_006574357.1| (PREDICTED: uncharacterized protein LOC100526952 isoform X1 [Glycine max])

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 96/114 (84.21%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+TQ+LKPYVLKMHFTNK+VSAQVIH+ TATVAS+ASSQEKALRSS+E++
Sbjct: 1   MVIPPPVRPPRITQFLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETS 60

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGK+L ERLLLK IPAV VHLKREQKYHGKVKAV+DS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKILAERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

[Close]
BLAST of Lsi01G020210 vs. NCBI nr
Match: gi|590644203|ref|XP_007031018.1| (Ribosomal L18p/L5e family protein [Theobroma cacao])

HSP 1 Score: 187.2 bits (474), Expect = 1.6e-44
Identity = 98/114 (85.96%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+T++LKPYVLKMHFTNK+VSAQVIHS TATVAS+ASSQEKALR+SMEST
Sbjct: 123 MVIPPPVRPPRITKFLKPYVLKMHFTNKYVSAQVIHSPTATVASSASSQEKALRASMEST 182

Query: 61  RDVAAASKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGKLLGERLLLK IPAV V LKREQKYHGKVKAV+DS++EAG+KLL
Sbjct: 183 RDVAAAAKIGKLLGERLLLKEIPAVSVFLKREQKYHGKVKAVIDSLKEAGVKLL 236

The following BLAST results are available for this feature:
BLAST of Lsi01G020210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL18_AZOC54.4e-1044.5750S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5... [more]
RL18_VIBPR5.7e-1044.5750S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1[more]
RL18_VIBTL9.8e-1043.4850S ribosomal protein L18 OS=Vibrio tasmaniensis (strain LGP32) GN=rplR PE=3 SV=... [more]
RL18_SHEB21.3e-0943.4850S ribosomal protein L18 OS=Shewanella baltica (strain OS223) GN=rplR PE=3 SV=1[more]
RL18_SHEB51.3e-0943.4850S ribosomal protein L18 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) G... [more]
BLAST of Lsi01G020210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0Z6_CUCSA3.0e-5094.74Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437000 PE=4 SV=1[more]
A0A059BKV1_EUCGR6.5e-4586.84Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00277 PE=4 SV=1[more]
A0A0B2SGL2_GLYSO8.5e-4584.2150S ribosomal protein L18 OS=Glycine soja GN=glysoja_026002 PE=4 SV=1[more]
I1JJR9_SOYBN8.5e-4584.21Uncharacterized protein OS=Glycine max GN=GLYMA_02G307100 PE=4 SV=1[more]
A0A061F2F1_THECC1.1e-4485.96Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_026668 PE=4 SV=1[more]
BLAST of Lsi01G020210 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27820.12.9e-4479.82 Ribosomal L18p/L5e family protein[more]
AT3G20230.11.2e-1032.67 Ribosomal L18p/L5e family protein[more]
AT1G08845.22.2e-0728.71 Ribosomal L18p/L5e family protein[more]
BLAST of Lsi01G020210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125466|ref|XP_008462699.1|6.7e-5196.49PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo][more]
gi|449453185|ref|XP_004144339.1|4.3e-5094.74PREDICTED: 50S ribosomal protein L18, cyanelle [Cucumis sativus][more]
gi|702361554|ref|XP_010059974.1|9.4e-4586.84PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Eucalyptus grandis][more]
gi|571437857|ref|XP_006574357.1|1.2e-4484.21PREDICTED: uncharacterized protein LOC100526952 isoform X1 [Glycine max][more]
gi|590644203|ref|XP_007031018.1|1.6e-4485.96Ribosomal L18p/L5e family protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006354 DNA-templated transcription, elongation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G020210.1Lsi01G020210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 20..113
score: 3.9
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 17..113
score: 4.6
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 1..114
score: 5.7
NoneNo IPR availablePANTHERPTHR12899:SF10SUBFAMILY NOT NAMEDcoord: 1..114
score: 5.7
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 13..111
score: 5.01

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G020210Csa4G437000Cucumber (Chinese Long) v2culsiB251
Lsi01G020210CSPI04G19390Wild cucumber (PI 183967)cpilsiB249
Lsi01G020210Cucsa.169840Cucumber (Gy14) v1cgylsiB283
Lsi01G020210Cla006096Watermelon (97103) v1lsiwmB149
Lsi01G020210ClCG04G003110Watermelon (Charleston Gray)lsiwcgB138
Lsi01G020210Cla97C04G070350Watermelon (97103) v2lsiwmbB136
Lsi01G020210CsGy4G018290Cucumber (Gy14) v2cgyblsiB238
Lsi01G020210CsaV3_4G029790Cucumber (Chinese Long) v3cuclsiB274
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G020210Wax gourdlsiwgoB173
Lsi01G020210Cucurbita maxima (Rimu)cmalsiB789
Lsi01G020210Cucurbita moschata (Rifu)cmolsiB589
Lsi01G020210Cucurbita moschata (Rifu)cmolsiB775
Lsi01G020210Cucurbita pepo (Zucchini)cpelsiB399
Lsi01G020210Melon (DHL92) v3.5.1lsimeB153
Lsi01G020210Melon (DHL92) v3.6.1lsimedB160
Lsi01G020210Silver-seed gourdcarlsiB430