ClCG04G003110 (gene) Watermelon (Charleston Gray)

Overview
NameClCG04G003110
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description50S ribosomal protein L18
LocationCG_Chr04 : 11418801 .. 11419145 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCACGGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCTACAAGGGACGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGACTATTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTAAGGGAAGCAGGTATTAAGCTACTTTGA

mRNA sequence

ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCACGGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCTACAAGGGACGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGACTATTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTAAGGGAAGCAGGTATTAAGCTACTTTGA

Coding sequence (CDS)

ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCACGGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCTACAAGGGACGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGACTATTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTAAGGGAAGCAGGTATTAAGCTACTTTGA

Protein sequence

MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL
Homology
[Close]
BLAST of ClCG04G003110 vs. Swiss-Prot
Match: RL18_AZOC5 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=rplR PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-11
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K + AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+ AV V  +    YHG+VKA+ +  RE G++
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]
BLAST of ClCG04G003110 vs. Swiss-Prot
Match: RL18_VIBPR (50S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-11
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+  V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]
BLAST of ClCG04G003110 vs. Swiss-Prot
Match: RL18_VIBTL (50S ribosomal protein L18 OS=Vibrio tasmaniensis (strain LGP32) GN=rplR PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-11
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1 

Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVISANGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+ +V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVASVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]
BLAST of ClCG04G003110 vs. Swiss-Prot
Match: RL18_ALISL (50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplR PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-11
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T +   AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           GI  V       Q YHG+V A+ DS REAG+K
Sbjct: 86  GITNVAFDRSGFQ-YHGRVAALADSAREAGLK 116

[Close]
BLAST of ClCG04G003110 vs. Swiss-Prot
Match: RL18_VIBPA (50S ribosomal protein L18 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rplR PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-11
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+ AV       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVTAVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]
BLAST of ClCG04G003110 vs. TrEMBL
Match: A0A0A0L0Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437000 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-53
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]
BLAST of ClCG04G003110 vs. TrEMBL
Match: A0A059BKV1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00277 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.7e-48
Identity = 101/114 (88.60%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVI PP KPPR+  +LKPYVLKMHFTNKFVSAQVIHS TATVAS+ASSQEKALR SM+ST
Sbjct: 1   MVILPPAKPPRIINFLKPYVLKMHFTNKFVSAQVIHSPTATVASSASSQEKALRPSMDST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+LGERLLLKGIPAV VHLKREQKYHGKVKAVIDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKILGERLLLKGIPAVAVHLKREQKYHGKVKAVIDSVREAGVKLL 114

[Close]
BLAST of ClCG04G003110 vs. TrEMBL
Match: I1JJR9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G307100 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.8e-48
Identity = 98/114 (85.96%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+TQ+LKPYVLKMHFTNK+VSAQVIH+ TATVAS+ASSQEKALRSS+E++
Sbjct: 1   MVIPPPVRPPRITQFLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETS 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+L ERLLLK IPAV VHLKREQKYHGKVKAVIDS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKILAERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

[Close]
BLAST of ClCG04G003110 vs. TrEMBL
Match: A0A0B2SGL2_GLYSO (50S ribosomal protein L18 OS=Glycine soja GN=glysoja_026002 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.8e-48
Identity = 98/114 (85.96%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+TQ+LKPYVLKMHFTNK+VSAQVIH+ TATVAS+ASSQEKALRSS+E++
Sbjct: 1   MVIPPPVRPPRITQFLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETS 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+L ERLLLK IPAV VHLKREQKYHGKVKAVIDS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKILAERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

[Close]
BLAST of ClCG04G003110 vs. TrEMBL
Match: A0A061F2F1_THECC (Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_026668 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.3e-48
Identity = 100/114 (87.72%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+T++LKPYVLKMHFTNK+VSAQVIHS TATVAS+ASSQEKALR+SMEST
Sbjct: 123 MVIPPPVRPPRITKFLKPYVLKMHFTNKYVSAQVIHSPTATVASSASSQEKALRASMEST 182

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLK IPAV V LKREQKYHGKVKAVIDS++EAG+KLL
Sbjct: 183 RDVAAAAKIGKLLGERLLLKEIPAVSVFLKREQKYHGKVKAVIDSLKEAGVKLL 236

[Close]
BLAST of ClCG04G003110 vs. TAIR10
Match: AT5G27820.1 (AT5G27820.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 183.3 bits (464), Expect = 8.2e-47
Identity = 91/114 (79.82%), Postives = 101/114 (88.60%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPP V+PPRL  YLKPYVLKMHFTNKFV AQVIHS TATVA +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVKAVIDSVREAG+KLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]
BLAST of ClCG04G003110 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12
Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = 1 

Query: 11  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIG 70
           R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +R+++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGI 112
           KL+ ER +   + AV    ++ ++  GK+  VID+++E GI
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]
BLAST of ClCG04G003110 vs. NCBI nr
Match: gi|659125466|ref|XP_008462699.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 3.8e-54
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]
BLAST of ClCG04G003110 vs. NCBI nr
Match: gi|449453185|ref|XP_004144339.1| (PREDICTED: 50S ribosomal protein L18, cyanelle [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-53
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]
BLAST of ClCG04G003110 vs. NCBI nr
Match: gi|702361554|ref|XP_010059974.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Eucalyptus grandis])

HSP 1 Score: 198.7 bits (504), Expect = 5.3e-48
Identity = 101/114 (88.60%), Postives = 107/114 (93.86%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVI PP KPPR+  +LKPYVLKMHFTNKFVSAQVIHS TATVAS+ASSQEKALR SM+ST
Sbjct: 1   MVILPPAKPPRIINFLKPYVLKMHFTNKFVSAQVIHSPTATVASSASSQEKALRPSMDST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+LGERLLLKGIPAV VHLKREQKYHGKVKAVIDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKILGERLLLKGIPAVAVHLKREQKYHGKVKAVIDSVREAGVKLL 114

[Close]
BLAST of ClCG04G003110 vs. NCBI nr
Match: gi|571437857|ref|XP_006574357.1| (PREDICTED: uncharacterized protein LOC100526952 isoform X1 [Glycine max])

HSP 1 Score: 198.4 bits (503), Expect = 6.9e-48
Identity = 98/114 (85.96%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+TQ+LKPYVLKMHFTNK+VSAQVIH+ TATVAS+ASSQEKALRSS+E++
Sbjct: 1   MVIPPPVRPPRITQFLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETS 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+L ERLLLK IPAV VHLKREQKYHGKVKAVIDS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKILAERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

[Close]
BLAST of ClCG04G003110 vs. NCBI nr
Match: gi|590644203|ref|XP_007031018.1| (Ribosomal L18p/L5e family protein [Theobroma cacao])

HSP 1 Score: 198.0 bits (502), Expect = 9.1e-48
Identity = 100/114 (87.72%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+T++LKPYVLKMHFTNK+VSAQVIHS TATVAS+ASSQEKALR+SMEST
Sbjct: 123 MVIPPPVRPPRITKFLKPYVLKMHFTNKYVSAQVIHSPTATVASSASSQEKALRASMEST 182

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLK IPAV V LKREQKYHGKVKAVIDS++EAG+KLL
Sbjct: 183 RDVAAAAKIGKLLGERLLLKEIPAVSVFLKREQKYHGKVKAVIDSLKEAGVKLL 236

The following BLAST results are available for this feature:
BLAST of ClCG04G003110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL18_AZOC51.0e-1144.5750S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5... [more]
RL18_VIBPR1.4e-1144.5750S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1[more]
RL18_VIBTL2.3e-1143.4850S ribosomal protein L18 OS=Vibrio tasmaniensis (strain LGP32) GN=rplR PE=3 SV=... [more]
RL18_ALISL3.0e-1145.6550S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplR PE=... [more]
RL18_VIBPA3.0e-1144.5750S ribosomal protein L18 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD... [more]
BLAST of ClCG04G003110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0Z6_CUCSA1.7e-5396.49Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437000 PE=4 SV=1[more]
A0A059BKV1_EUCGR3.7e-4888.60Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00277 PE=4 SV=1[more]
I1JJR9_SOYBN4.8e-4885.96Uncharacterized protein OS=Glycine max GN=GLYMA_02G307100 PE=4 SV=1[more]
A0A0B2SGL2_GLYSO4.8e-4885.9650S ribosomal protein L18 OS=Glycine soja GN=glysoja_026002 PE=4 SV=1[more]
A0A061F2F1_THECC6.3e-4887.72Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_026668 PE=4 SV=1[more]
BLAST of ClCG04G003110 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27820.18.2e-4779.82 Ribosomal L18p/L5e family protein[more]
AT3G20230.11.0e-1233.66 Ribosomal L18p/L5e family protein[more]
BLAST of ClCG04G003110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125466|ref|XP_008462699.1|3.8e-5498.25PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo][more]
gi|449453185|ref|XP_004144339.1|2.5e-5396.49PREDICTED: 50S ribosomal protein L18, cyanelle [Cucumis sativus][more]
gi|702361554|ref|XP_010059974.1|5.3e-4888.60PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Eucalyptus grandis][more]
gi|571437857|ref|XP_006574357.1|6.9e-4885.96PREDICTED: uncharacterized protein LOC100526952 isoform X1 [Glycine max][more]
gi|590644203|ref|XP_007031018.1|9.1e-4887.72Ribosomal L18p/L5e family protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G003110.1ClCG04G003110.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 20..113
score: 4.0
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 17..113
score: 3.3
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 1..114
score: 3.0
NoneNo IPR availablePANTHERPTHR12899:SF10SUBFAMILY NOT NAMEDcoord: 1..114
score: 3.0
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 13..111
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG04G003110Csa4G437000Cucumber (Chinese Long) v2cuwcgB306
ClCG04G003110Cla006096Watermelon (97103) v1wcgwmB257
ClCG04G003110Cla97C04G070350Watermelon (97103) v2wcgwmbB200
ClCG04G003110CSPI04G19390Wild cucumber (PI 183967)cpiwcgB314
ClCG04G003110Cucsa.169840Cucumber (Gy14) v1cgywcgB304
ClCG04G003110Lsi01G020210Bottle gourd (USVL1VR-Ls)lsiwcgB138
ClCG04G003110CsGy4G018290Cucumber (Gy14) v2cgybwcgB283
ClCG04G003110CsaV3_4G029790Cucumber (Chinese Long) v3cucwcgB319
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG04G003110Wax gourdwcgwgoB398
ClCG04G003110Watermelon (Charleston Gray)wcgwcgB153
ClCG04G003110Cucurbita maxima (Rimu)cmawcgB764
ClCG04G003110Cucurbita moschata (Rifu)cmowcgB765
ClCG04G003110Melon (DHL92) v3.5.1mewcgB535
ClCG04G003110Cucurbita pepo (Zucchini)cpewcgB440
ClCG04G003110Melon (DHL92) v3.6.1medwcgB531
ClCG04G003110Silver-seed gourdcarwcgB0461