CsaV3_4G029790 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G029790
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L18
Location	chr4 : 19446396 .. 19449119 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAATAATTAATTTGTATAAAACCTAAACCATGGTTTCCTCTTTTAACCTTTTCCTACCTCTCACTCTCTCTCGCTCCGGTTGTTTGTTGTGTAGGCGATAGGCGTGTTCTTCCGGCAACTTCACGCAGCCGTTTCCCATCAAGGTCTTCCCGGATCTCTTCTTTTGTCTTTCTCTTTCTTCTTATTTCTTCACTTCAATTAACTTCAGAATAGGGTAAGTTTAGTATTAATTAGGTCAATAAATCTGAGTTGAATTCGGATTTCTAATGAAATGGAGGGTTAGACTACTGTCATTTCTCGATGCATCTAAGATATCTTACATCTTGCTGATAAATTTTGTTTCTAATTTGTTTTCCTTTTCTTTTGAAACCGTTTATTGGGTTCAGTCTGTTGCTAGAATTGTTGATAGTGTAGGAATATAAAGGAGCATTGTTTGTTACCATGATTGGGAGTTTCACTTTTATCTTTCAGTTTGGTGGGATTATTTGAGGGGCTTGCTTAAAGTGGCTACCTCGATTCTATATCGTTGAATGTATGAGGGAAAATTCGATAATGCTCTCTTCAACATGGATTTATGTTTGTGAGATTTGAACCTGTTGGAAATCTCTTTGCAGTGGCCATAGTGGGTAGAGTTTCCTCAATTTGGCTCGAGTCATTACAAATTGAAACCCTGAGAAATCCGGCACAATATAAGCTCAAATTAGTCGAAACTGAATAAATTAACTCAAACCCATTGGTGTTGTTGAAAACTGGGCCTGTCTAATCCATGCTCACTGGATTTGTTGTCCATTTTCACTACTAATATTCATTTAGCGAAAAAAATCTGCAAAATAGAACGTATATCCTTGGGGCTTGGTCTTATGAATAATGCTATTTAAATTTTTTCAAGAACAATTACCCTCTATATTTGTTGCTACTAATAATAGTAGAGCATAGCCATTACCATTGCCATTACTTTGAAAGCTATGTTAGGAATATTAAACAATGATTTGTTTCGATGCCCTTTTGTCACTTATCATTTTTGTATTTATGTGTTAGGATTCACTTCACTTGATCAGAGGTGGTTTCAGTGTTCTTTCATTGTCTTTTTCTGTACGAAATTGGTTTTTTAGGGCCAAAATGATGAATGAAAATAGGGAAAACAATAGCATTTAAACAAATATATTAATGAATAATTAACCGATTGGTAGCTTAGCTTAAGCTTGAGAGGATTGAAGATTCTGATATTGACCCTTATTTGTGTTGTTTAGAGTATAATTGAATTGGAGTAGCCAAGGGAGATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCATTGTTGCTTCAGCTGCAAGCTCACAAGAGAAGGCATTGCAGTCGAGTATGGAGTCGACAAGGGATGTTGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGGGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGACCCTTTTTTTCTTTTTCCAATTTGCTTCATTTTGGCCCTCCTTGGAAATAGTTATCTGGTTTAATTGTTGGGCTTCATCAATCAATGCTTAATATTATCTGAATTTGTAATGAAATGTGATGAGATGCATTGTTGGACTTTTTGTCTGTCTTTATGGTCGTTTATAAATGAGTTTGAGATGAATATGAACAGTGAGCAGTGTTTTTAGTTTAAGAAAAATTATAAAACTTAAACTTGAGTTATTTCCAGCTGAAGCCAAGTCTCCAATCTTTTTCATAGATCAAAATTTTGCAATTGTTGCTACCATATCACCAAAAGATTTTTTCCAATGTTAACTCGCATAAATAACTTGTACACAAATGTCAATATTATTTTAACATTCTTAAACATAAAAGAATCCAATAAACTGAAGGCCAAACATGTAATTAATGATTAAAAAAAAACCCACCTAGTATGTGCAAAACTTCATAAAATACATATCATTTTAAACCAACAATGTCACACCCCACCCGAGCACCTTCTCTTACTTGAAAAGAGGTGTGAAGCTAGCAAACATCAGTATTTTGGCAGAGCGACTGAGGAAGGGCCGAAGACCCACAAGAAGGATCCATGAAGGTCAAACACCCACAAGAAGGATCCATGAATAGTTGGTAAAGTAGAAGAACCTTCTTGTGGAAGAAACTAGTTGAGAACATGTTGAAGACCTAGAAGCCTGGATGCAGAAGATTAAAGAGTTCAAGGTTCACCAGTCGACAAAGATGTCAACTATTTAAGTGGAGGAGAATGTAACATGCATACTTGTCCTAAACGATGTTTGCCTATGGTTGTATGTTCAAATATCCTCGATTGATCTTATCTTTATGTCTTGTATTTAATTTAGCTAACTGCTCTCCTTTTTAAGTTATAAAGCTTGTATGTGACGTTTCAATATTTTCATATGCAAGTCCACCAGAGCTGAAAATGTTCAAAATGTGCAATAGGAGAGACATAGTAGTTGAATCCCTACTCAAGCTTTGTCGCACTCTTTGAAATCTAAACTTTTTGTTGCAATTGACAGTCTTTAATGCTTGTTTTAACAACGATTTCAATAAAAT

mRNA sequence

ATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCATTGTTGCTTCAGCTGCAAGCTCACAAGAGAAGGCATTGCAGTCGAGTATGGAGTCGACAAGGGATGTTGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGGGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGA

Coding sequence (CDS)

ATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCATTGTTGCTTCAGCTGCAAGCTCACAAGAGAAGGCATTGCAGTCGAGTATGGAGTCGACAAGGGATGTTGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGGGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGA

Protein sequence

MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL

Homology

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BLAST of CsaV3_4G029790 vs. NCBI nr
Match: XP_004144339.1 (PREDICTED: 50S ribosomal protein L18, cyanelle [Cucumis sativus] >KGN54729.1 hypothetical protein Csa_4G437000 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 2.4e-52
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

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BLAST of CsaV3_4G029790 vs. NCBI nr
Match: XP_008462699.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 2.9e-50
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

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BLAST of CsaV3_4G029790 vs. NCBI nr
Match: XP_022961444.1 (uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 uncharacterized protein LOC111462025 [Cucurbita moschata])

HSP 1 Score: 205.3 bits (521), Expect = 1.1e-49
Identity = 106/114 (92.98%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

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BLAST of CsaV3_4G029790 vs. NCBI nr
Match: XP_022968817.1 (uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968820.1 uncharacterized protein LOC111467940 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 2.5e-49
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEK L+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

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BLAST of CsaV3_4G029790 vs. NCBI nr
Match: XP_023515963.1 (uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.8 bits (517), Expect = 3.2e-49
Identity = 104/114 (91.23%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPY+LKMHFTNK+VSAQVIHS+TA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYILKMHFTNKYVSAQVIHSKTATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

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BLAST of CsaV3_4G029790 vs. TAIR10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-43
Identity = 89/114 (78.07%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPP ++PPRL  YLKPYVLKMHFTNKFV AQVIHS TA VA +ASSQEKAL+ +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAA+KIGK+LGERLL+K IPAV + +K+EQRYHGKVKAVIDSVREAG+KLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

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BLAST of CsaV3_4G029790 vs. TAIR10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 63.9 bits (154), Expect = 7.3e-11
Identity = 34/101 (33.66%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 11  RLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIG 70
           R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +++++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 71  KLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGI 112
           KL+ ER +   + AV    ++ +R  GK+  VID+++E GI
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

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BLAST of CsaV3_4G029790 vs. TAIR10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 44.7 bits (104), Expect = 4.6e-05
Identity = 28/96 (29.17%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 18  PYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERL 77
           P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R 
Sbjct: 197 PFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAVLAQRS 256

Query: 78  LLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKL 114
           L   I  V    ++  +  GK++ V+ ++ + G+ +
Sbjct: 257 LEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNV 292

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BLAST of CsaV3_4G029790 vs. TAIR10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04
Identity = 33/108 (30.56%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 16  LKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTR--DVAAAAKIGKLL 75
           LK YVL++  + K+++A V+      + + AS+ E  +++S+E  R  +  AAA +G++L
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 76  GERLLLKGIP-----AVCVHLKREQRYHG-----KVKAVIDSVREAGI 112
             RL ++G+       +   +K+E    G     KV AVI+S+R  G+
Sbjct: 64  AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGV 111

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BLAST of CsaV3_4G029790 vs. Swiss-Prot
Match: sp|A7HM36|RL18_FERNB (50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rplR PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 26  TNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAV 85
           + K + AQ+I     I   AAS+ EKA++  ++ T ++ AA ++GKL+ ER L KGI  V
Sbjct: 36  SEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTWNITAAKEVGKLIAERALAKGIKEV 95

Query: 86  CVHLKREQRYHGKVKAVIDSVREAGIK 113
            V  +   +YHG+VKA+ D+ REAG+K
Sbjct: 96  -VFDRGGFKYHGRVKALADAAREAGLK 121

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BLAST of CsaV3_4G029790 vs. Swiss-Prot
Match: sp|A8IAP8|RL18_AZOC5 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K + AQ+I         AASS EK L+SS+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVREAGIK 113
           G+ AV V  +    YHG+VKA+ +  RE G++
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

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BLAST of CsaV3_4G029790 vs. Swiss-Prot
Match: sp|Q89A81|RL18_BUCBP (50S ribosomal protein L18 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K + AQ+I S+ A+V ++AS+ EK + + ++ T ++ A+  IGK + ER L+K
Sbjct: 30  LVVHRTSKHIYAQIIDSKNALVLTSASTVEKEILNLVKYTGNIHASICIGKKIAERALMK 89

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVREAGIK 113
           GI  V       Q YHG+VKA+ D+ RE+G+K
Sbjct: 90  GIINVSFDRSGFQ-YHGRVKALADAARESGLK 120

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BLAST of CsaV3_4G029790 vs. Swiss-Prot
Match: sp|A1RED0|RL18_SHESW (50S ribosomal protein L18 OS=Shewanella sp. (strain W3-18-1) OX=351745 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + + AQVI+ E  +VA AAS+ EKA++  ++ST +V AA  +GK + ER + K
Sbjct: 26  LVVHRTPRHIYAQVINPEAQVVA-AASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEK 85

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVREAGIK 113
           G+ +V    +   +YHG+V A+ D+ REAG++
Sbjct: 86  GVTSVAFD-RSGFKYHGRVAALADAAREAGLQ 115

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BLAST of CsaV3_4G029790 vs. Swiss-Prot
Match: sp|P52863|RL18_VIBPR (50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI S  + V +AAS+ EKA++  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVREAGIK 113
           G+  V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

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BLAST of CsaV3_4G029790 vs. TrEMBL
Match: tr|A0A0A0L0Z6|A0A0A0L0Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-52
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of CsaV3_4G029790 vs. TrEMBL
Match: tr|A0A1S3CHJ0|A0A1S3CHJ0_CUCME (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.9e-50
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

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BLAST of CsaV3_4G029790 vs. TrEMBL
Match: tr|A0A218WXC2|A0A218WXC2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr016834 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.5e-45
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP +PPR+  +LKPYVLKMHFTNKFVSAQVIHS TA VAS+ASSQEKAL++SMEST
Sbjct: 1   MVIPPPARPPRIVDFLKPYVLKMHFTNKFVSAQVIHSPTATVASSASSQEKALRASMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+LGERLLL+GIPA+ VHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKILGERLLLQGIPAISVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of CsaV3_4G029790 vs. TrEMBL
Match: tr|G7IE75|G7IE75_MEDTR (50S ribosomal L18-like protein OS=Medicago truncatula OX=3880 GN=11445003 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.1e-44
Identity = 97/114 (85.09%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIH+ TA VAS+ASSQEKAL+SS+E+T
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETT 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLL ERL LK IPAV VHLKREQRYHGKVKAVIDS+REAG++LL
Sbjct: 61  RDVAAAAKIGKLLAERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVRLL 114

[Close]

BLAST of CsaV3_4G029790 vs. TrEMBL
Match: tr|A0A2I4H1J9|A0A2I4H1J9_9ROSI (uncharacterized protein LOC109012700 OS=Juglans regia OX=51240 GN=LOC109012700 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.7e-44
Identity = 95/114 (83.33%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPR+T YLKPYVLKMHFTNK+VS QVIH+ TA +AS+ASSQEKAL+ SMEST
Sbjct: 1   MVIPPPVRPPRITNYLKPYVLKMHFTNKYVSTQVIHAPTATIASSASSQEKALRPSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 115
           RDVAAA KIGK+LGERLLLK IPAV VHLKREQRYHGKVKAVIDS+REAG+KLL
Sbjct: 61  RDVAAAGKIGKILGERLLLKDIPAVAVHLKREQRYHGKVKAVIDSLREAGVKLL 114

The following BLAST results are available for this feature:

BLAST of CsaV3_4G029790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144339.1	2.4e-52	100.00	PREDICTED: 50S ribosomal protein L18, cyanelle [Cucumis sativus] >KGN54729.1 hyp...	[more]
XP_008462699.1	2.9e-50	96.49	PREDICTED: 50S ribosomal protein L18 [Cucumis melo]	[more]
XP_022961444.1	1.1e-49	92.98	uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 unchar...	[more]
XP_022968817.1	2.5e-49	92.11	uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharac...	[more]
XP_023515963.1	3.2e-49	91.23	uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_4G029790 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27820.1	1.1e-43	78.07	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	7.3e-11	33.66	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	4.6e-05	29.17	Ribosomal L18p/L5e family protein	[more]
AT3G45020.1	1.0e-04	30.56	Ribosomal L18p/L5e family protein	[more]

BLAST of CsaV3_4G029790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A7HM36\|RL18_FERNB	1.0e-09	42.53	50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
sp\|A8IAP8\|RL18_AZOC5	1.3e-09	43.48	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
sp\|Q89A81\|RL18_BUCBP	1.7e-09	41.30	50S ribosomal protein L18 OS=Buchnera aphidicola subsp. Baizongia pistaciae (str...	[more]
sp\|A1RED0\|RL18_SHESW	1.7e-09	41.30	50S ribosomal protein L18 OS=Shewanella sp. (strain W3-18-1) OX=351745 GN=rplR P...	[more]
sp\|P52863\|RL18_VIBPR	1.7e-09	43.48	50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1	[more]

BLAST of CsaV3_4G029790 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0Z6\|A0A0A0L0Z6_CUCSA	1.6e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1	[more]
tr\|A0A1S3CHJ0\|A0A1S3CHJ0_CUCME	1.9e-50	96.49	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1	[more]
tr\|A0A218WXC2\|A0A218WXC2_PUNGR	5.5e-45	85.96	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr016834 PE=4 SV=1	[more]
tr\|G7IE75\|G7IE75_MEDTR	2.1e-44	85.09	50S ribosomal L18-like protein OS=Medicago truncatula OX=3880 GN=11445003 PE=4 S...	[more]
tr\|A0A2I4H1J9\|A0A2I4H1J9_9ROSI	2.7e-44	83.33	uncharacterized protein LOC109012700 OS=Juglans regia OX=51240 GN=LOC109012700 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G029790.1	CsaV3_4G029790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 9..113 e-value: 8.0E-25 score: 89.5
None	No IPR available	PANTHER	PTHR12899:SF6	SUBFAMILY NOT NAMED	coord: 1..114
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 11..111 e-value: 3.52188E-27 score: 96.8403
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 13..111
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 20..113 e-value: 2.5E-16 score: 60.0
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..114

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G029790	CSPI04G19390	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G029790	Cucsa.169840	Cucumber (Gy14) v1	cgycucB271
CsaV3_4G029790	CsGy4G018290	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G029790	ClCG04G003110	Watermelon (Charleston Gray)	cucwcgB319
CsaV3_4G029790	Lsi01G020210	Bottle gourd (USVL1VR-Ls)	cuclsiB274
CsaV3_4G029790	Cla97C04G070350	Watermelon (97103) v2	cucwmbB308

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G029790	Cucurbita maxima (Rimu)	cmacucB0798
CsaV3_4G029790	Cucurbita pepo (Zucchini)	cpecucB0078