ClCG04G003110.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G003110.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	50S ribosomal protein L18
Location	CG_Chr04 : 11418801 .. 11419145 (+)
Sequence length	345

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCACGGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCTACAAGGGACGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGACTATTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTAAGGGAAGCAGGTATTAAGCTACTTTGA

mRNA sequence

ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCACGGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCTACAAGGGACGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGACTATTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTAAGGGAAGCAGGTATTAAGCTACTTTGA

Coding sequence (CDS)

ATGGTGATTCCTCCTCCAGTTAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCACGGTTGCTTCGGCTGCAAGCTCACAGGAGAAGGCACTGCGGTCGAGCATGGAGTCTACAAGGGACGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGACTATTGCTTAAGGGAATCCCGGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTAAGGGAAGCAGGTATTAAGCTACTTTGA

Protein sequence

MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL

Homology

[Close]

BLAST of ClCG04G003110.1 vs. Swiss-Prot
Match: RL18_AZOC5 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=rplR PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-11
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 1


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K + AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+ AV V  +    YHG+VKA+ +  RE G++
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]

BLAST of ClCG04G003110.1 vs. Swiss-Prot
Match: RL18_VIBPR (50S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-11
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+  V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of ClCG04G003110.1 vs. Swiss-Prot
Match: RL18_VIBTL (50S ribosomal protein L18 OS=Vibrio tasmaniensis (strain LGP32) GN=rplR PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-11
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVISANGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+ +V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVASVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of ClCG04G003110.1 vs. Swiss-Prot
Match: RL18_ALISL (50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplR PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-11
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 1


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T +   AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           GI  V       Q YHG+V A+ DS REAG+K
Sbjct: 86  GITNVAFDRSGFQ-YHGRVAALADSAREAGLK 116

[Close]

BLAST of ClCG04G003110.1 vs. Swiss-Prot
Match: RL18_VIBPA (50S ribosomal protein L18 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rplR PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-11
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1


Query: 21  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVIDSVREAGIK 113
           G+ AV       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVTAVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of ClCG04G003110.1 vs. TrEMBL
Match: A0A0A0L0Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437000 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.7e-53
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of ClCG04G003110.1 vs. TrEMBL
Match: A0A059BKV1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00277 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.7e-48
Identity = 101/114 (88.60%), Postives = 107/114 (93.86%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVI PP KPPR+  +LKPYVLKMHFTNKFVSAQVIHS TATVAS+ASSQEKALR SM+ST
Sbjct: 1   MVILPPAKPPRIINFLKPYVLKMHFTNKFVSAQVIHSPTATVASSASSQEKALRPSMDST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+LGERLLLKGIPAV VHLKREQKYHGKVKAVIDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKILGERLLLKGIPAVAVHLKREQKYHGKVKAVIDSVREAGVKLL 114

[Close]

BLAST of ClCG04G003110.1 vs. TrEMBL
Match: I1JJR9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G307100 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.8e-48
Identity = 98/114 (85.96%), Postives = 110/114 (96.49%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+TQ+LKPYVLKMHFTNK+VSAQVIH+ TATVAS+ASSQEKALRSS+E++
Sbjct: 1   MVIPPPVRPPRITQFLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETS 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+L ERLLLK IPAV VHLKREQKYHGKVKAVIDS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKILAERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

[Close]

BLAST of ClCG04G003110.1 vs. TrEMBL
Match: A0A0B2SGL2_GLYSO (50S ribosomal protein L18 OS=Glycine soja GN=glysoja_026002 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.8e-48
Identity = 98/114 (85.96%), Postives = 110/114 (96.49%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+TQ+LKPYVLKMHFTNK+VSAQVIH+ TATVAS+ASSQEKALRSS+E++
Sbjct: 1   MVIPPPVRPPRITQFLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETS 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+L ERLLLK IPAV VHLKREQKYHGKVKAVIDS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKILAERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

[Close]

BLAST of ClCG04G003110.1 vs. TrEMBL
Match: A0A061F2F1_THECC (Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_026668 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.3e-48
Identity = 100/114 (87.72%), Postives = 110/114 (96.49%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+T++LKPYVLKMHFTNK+VSAQVIHS TATVAS+ASSQEKALR+SMEST
Sbjct: 123 MVIPPPVRPPRITKFLKPYVLKMHFTNKYVSAQVIHSPTATVASSASSQEKALRASMEST 182

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLK IPAV V LKREQKYHGKVKAVIDS++EAG+KLL
Sbjct: 183 RDVAAAAKIGKLLGERLLLKEIPAVSVFLKREQKYHGKVKAVIDSLKEAGVKLL 236

[Close]

BLAST of ClCG04G003110.1 vs. TAIR10
Match: AT5G27820.1 (AT5G27820.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 183.3 bits (464), Expect = 8.2e-47
Identity = 91/114 (79.82%), Postives = 101/114 (88.60%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPP V+PPRL  YLKPYVLKMHFTNKFV AQVIHS TATVA +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVKAVIDSVREAG+KLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]

BLAST of ClCG04G003110.1 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12
Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 11  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIG 70
           R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +R+++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGI 112
           KL+ ER +   + AV    ++ ++  GK+  VID+++E GI
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of ClCG04G003110.1 vs. NCBI nr
Match: gi|659125466|ref|XP_008462699.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 3.8e-54
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of ClCG04G003110.1 vs. NCBI nr
Match: gi|449453185|ref|XP_004144339.1| (PREDICTED: 50S ribosomal protein L18, cyanelle [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-53
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPP+KPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of ClCG04G003110.1 vs. NCBI nr
Match: gi|702361554|ref|XP_010059974.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Eucalyptus grandis])

HSP 1 Score: 198.7 bits (504), Expect = 5.3e-48
Identity = 101/114 (88.60%), Postives = 107/114 (93.86%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVI PP KPPR+  +LKPYVLKMHFTNKFVSAQVIHS TATVAS+ASSQEKALR SM+ST
Sbjct: 1   MVILPPAKPPRIINFLKPYVLKMHFTNKFVSAQVIHSPTATVASSASSQEKALRPSMDST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+LGERLLLKGIPAV VHLKREQKYHGKVKAVIDSVREAG+KLL
Sbjct: 61  RDVAAAAKIGKILGERLLLKGIPAVAVHLKREQKYHGKVKAVIDSVREAGVKLL 114

[Close]

BLAST of ClCG04G003110.1 vs. NCBI nr
Match: gi|571437857|ref|XP_006574357.1| (PREDICTED: uncharacterized protein LOC100526952 isoform X1 [Glycine max])

HSP 1 Score: 198.4 bits (503), Expect = 6.9e-48
Identity = 98/114 (85.96%), Postives = 110/114 (96.49%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+TQ+LKPYVLKMHFTNK+VSAQVIH+ TATVAS+ASSQEKALRSS+E++
Sbjct: 1   MVIPPPVRPPRITQFLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETS 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGK+L ERLLLK IPAV VHLKREQKYHGKVKAVIDS+REAG+KLL
Sbjct: 61  RDVAAAAKIGKILAERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114

[Close]

BLAST of ClCG04G003110.1 vs. NCBI nr
Match: gi|590644203|ref|XP_007031018.1| (Ribosomal L18p/L5e family protein [Theobroma cacao])

HSP 1 Score: 198.0 bits (502), Expect = 9.1e-48
Identity = 100/114 (87.72%), Postives = 110/114 (96.49%), Query Frame = 1


Query: 1   MVIPPPVKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60
           MVIPPPV+PPR+T++LKPYVLKMHFTNK+VSAQVIHS TATVAS+ASSQEKALR+SMEST
Sbjct: 123 MVIPPPVRPPRITKFLKPYVLKMHFTNKYVSAQVIHSPTATVASSASSQEKALRASMEST 182

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 115
           RDVAAAAKIGKLLGERLLLK IPAV V LKREQKYHGKVKAVIDS++EAG+KLL
Sbjct: 183 RDVAAAAKIGKLLGERLLLKEIPAVSVFLKREQKYHGKVKAVIDSLKEAGVKLL 236

The following BLAST results are available for this feature:

BLAST of ClCG04G003110.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL18_AZOC5	1.0e-11	44.57	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
RL18_VIBPR	1.4e-11	44.57	50S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1	[more]
RL18_VIBTL	2.3e-11	43.48	50S ribosomal protein L18 OS=Vibrio tasmaniensis (strain LGP32) GN=rplR PE=3 SV=...	[more]
RL18_ALISL	3.0e-11	45.65	50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplR PE=...	[more]
RL18_VIBPA	3.0e-11	44.57	50S ribosomal protein L18 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD...	[more]

BLAST of ClCG04G003110.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Z6_CUCSA	1.7e-53	96.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437000 PE=4 SV=1	[more]
A0A059BKV1_EUCGR	3.7e-48	88.60	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00277 PE=4 SV=1	[more]
I1JJR9_SOYBN	4.8e-48	85.96	Uncharacterized protein OS=Glycine max GN=GLYMA_02G307100 PE=4 SV=1	[more]
A0A0B2SGL2_GLYSO	4.8e-48	85.96	50S ribosomal protein L18 OS=Glycine soja GN=glysoja_026002 PE=4 SV=1	[more]
A0A061F2F1_THECC	6.3e-48	87.72	Ribosomal L18p/L5e family protein OS=Theobroma cacao GN=TCM_026668 PE=4 SV=1	[more]

BLAST of ClCG04G003110.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27820.1	8.2e-47	79.82	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	1.0e-12	33.66	Ribosomal L18p/L5e family protein	[more]

BLAST of ClCG04G003110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125466\|ref\|XP_008462699.1\|	3.8e-54	98.25	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]	[more]
gi\|449453185\|ref\|XP_004144339.1\|	2.5e-53	96.49	PREDICTED: 50S ribosomal protein L18, cyanelle [Cucumis sativus]	[more]
gi\|702361554\|ref\|XP_010059974.1\|	5.3e-48	88.60	PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Eucalyptus grandis]	[more]
gi\|571437857\|ref\|XP_006574357.1\|	6.9e-48	85.96	PREDICTED: uncharacterized protein LOC100526952 isoform X1 [Glycine max]	[more]
gi\|590644203\|ref\|XP_007031018.1\|	9.1e-48	87.72	Ribosomal L18p/L5e family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG04G003110	ClCG04G003110	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG04G003110.1	ClCG04G003110.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G003110.1.cds1	ClCG04G003110.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 20..113 score: 4.0
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 17..113 score: 3.3
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..114 score: 3.0
None	No IPR available	PANTHER	PTHR12899:SF10	SUBFAMILY NOT NAMED	coord: 1..114 score: 3.0
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 13..111 score: 2.4