CmoCh20G001390 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G001390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pentatricopeptide (PPR) repeat protein
Location	Cmo_Chr20 : 697961 .. 698282 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACAGTTTTGTATTCGAAGCTTTAGATTTCACTTCGCTCAAATCGCTCGATTCCAATTCAGAAACTACGTTCGAAGAACAGAGCCAAATTCTTCCGTTCACATCAACCTCCTCACCCTGTGCTTCAACGCTCAATCGCTTCGTCAAACCAAAGAAGTCCACGCCATTTGCCTTCTCAATGGCTTGCTTCCTCATAGTGTATCACTCTGTGCTTCCCTTATTCTTAATTACGCCAAGTTTCAGCACCCAGAATCGTTCTGTACTCTGTTCCATCAAACTGTCCAGAATTGTCGTACTGCGTTCCTGTGGAATACCTTGA

mRNA sequence

ATGTTACAGTTTTGTATTCGAAGCTTTAGATTTCACTTCGCTCAAATCGCTCGATTCCAATTCAGAAACTACGTTCGAAGAACAGAGCCAAATTCTTCCGTTCACATCAACCTCCTCACCCTGTGCTTCAACGCTCAATCGCTTCGTCAAACCAAAGAAGTCCACGCCATTTGCCTTCTCAATGGCTTGCTTCCTCATAGTGTATCACTCTGTGCTTCCCTTATTCTTAATTACGCCAACACCCAGAATCGTTCTGTACTCTGTTCCATCAAACTGTCCAGAATTGTCGTACTGCGTTCCTGTGGAATACCTTGA

Coding sequence (CDS)

ATGTTACAGTTTTGTATTCGAAGCTTTAGATTTCACTTCGCTCAAATCGCTCGATTCCAATTCAGAAACTACGTTCGAAGAACAGAGCCAAATTCTTCCGTTCACATCAACCTCCTCACCCTGTGCTTCAACGCTCAATCGCTTCGTCAAACCAAAGAAGTCCACGCCATTTGCCTTCTCAATGGCTTGCTTCCTCATAGTGTATCACTCTGTGCTTCCCTTATTCTTAATTACGCCAACACCCAGAATCGTTCTGTACTCTGTTCCATCAAACTGTCCAGAATTGTCGTACTGCGTTCCTGTGGAATACCTTGA

Homology

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BLAST of CmoCh20G001390 vs. TrEMBL
Match: A0A0A0KEH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G428560 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 1


Query: 1   MLQFCIRS-----FRFHF-AQIARFQFRNYVR----------------RTEPNSSVHINL 60
           ML+FCIRS       F F +QI RFQ+RN+++                 T+PNS +HINL
Sbjct: 1   MLEFCIRSSIVSPLPFPFPSQIIRFQYRNFLQPILVSALQSPLSPPSSSTDPNSYIHINL 60

Query: 61  LTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI 91
           LTLC   QSL QTK+VHA+ +LNG LP SVSLCASLILNYA  Q+    CS+
Sbjct: 61  LTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSL 112

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BLAST of CmoCh20G001390 vs. TrEMBL
Match: A0A068UN38_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030050001 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1


Query: 12 HFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLC 71
          HF     F      +   P S    NLL LC + QSL QTK+ HAIC+ +GLLP S+S+C
Sbjct: 19 HFHSHPPFLSPTSAKCRPPLSQPPPNLLPLCASTQSLNQTKQAHAICIHHGLLPSSISIC 78

Query: 72 ASLILNYA 80
          A+LIL YA
Sbjct: 79 AALILRYA 86

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BLAST of CmoCh20G001390 vs. TrEMBL
Match: W9RP97_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002623 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 35 HINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA 80
          H +LL LC  AQSLRQ  ++HA  LLNG LP S+SLCASLIL YA
Sbjct: 44 HSDLLQLCSAAQSLRQANQLHAFALLNGFLPRSLSLCASLILRYA 88

[Close]

BLAST of CmoCh20G001390 vs. TrEMBL
Match: A0A0J8CRM9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g074060 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 30 PNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA 80
          PNS   I+LL L  + QSL+QTK+ HA+ LL GLLP SVSLCASLILNYA
Sbjct: 45 PNS---IDLLPLLSSLQSLQQTKQSHALALLYGLLPSSVSLCASLILNYA 91

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BLAST of CmoCh20G001390 vs. TrEMBL
Match: A0A103Y2F8_CYNCS (Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_020459 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-06
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 28 TEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA 80
          T P  S H N+L LC + +SL QTK+ HAI LL+G LPHS+S+ ASLIL YA
Sbjct: 34 TIPQQSHH-NILPLCSSTESLAQTKQSHAIALLSGYLPHSISISASLILQYA 84

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BLAST of CmoCh20G001390 vs. NCBI nr
Match: gi|449445027|ref|XP_004140275.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-17
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 1


Query: 1   MLQFCIRS-----FRFHF-AQIARFQFRNYVR----------------RTEPNSSVHINL 60
           ML+FCIRS       F F +QI RFQ+RN+++                 T+PNS +HINL
Sbjct: 1   MLEFCIRSSIVSPLPFPFPSQIIRFQYRNFLQPILVSALQSPLSPPSSSTDPNSYIHINL 60

Query: 61  LTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI 91
           LTLC   QSL QTK+VHA+ +LNG LP SVSLCASLILNYA  Q+    CS+
Sbjct: 61  LTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSL 112

[Close]

BLAST of CmoCh20G001390 vs. NCBI nr
Match: gi|659097428|ref|XP_008449620.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-14
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 1   MLQFCIRS-----FRFHF-AQIARFQFRNYVR----------------RTEPNSSVHINL 60
           ML+ CIRS         F +QI RF++RN+ +                 T+ NS +HINL
Sbjct: 1   MLELCIRSSIVSPLPIPFPSQITRFRYRNFHQPILVSALQSPLSPPSSSTDSNSYIHINL 60

Query: 61  LTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI 91
           LTLC   QSL QTK+VHA+ +LNG LP SVSLCASLILNYA  Q+    CS+
Sbjct: 61  LTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPESFCSL 112

[Close]

BLAST of CmoCh20G001390 vs. NCBI nr
Match: gi|1009113601|ref|XP_015873236.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g14170-like [Ziziphus jujuba])

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-08
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 32  SSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRS 86
           +  H +LLTLC N  SLRQT +VHA  LLNGLLP SVSL ASL+LNYA   N S
Sbjct: 49  AQAHSDLLTLCSNLHSLRQTNQVHAFALLNGLLPRSVSLSASLMLNYAMFGNPS 102

[Close]

BLAST of CmoCh20G001390 vs. NCBI nr
Match: gi|645219080|ref|XP_008233930.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Prunus mume])

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1


Query: 35 HINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA 80
          H ++LTL  N Q+L QTK+VHA  LLNGLLPHSVSLCASL+L+YA
Sbjct: 49 HTDILTLSSNVQTLHQTKQVHASALLNGLLPHSVSLCASLMLSYA 93

[Close]

BLAST of CmoCh20G001390 vs. NCBI nr
Match: gi|658004619|ref|XP_008337437.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Malus domestica])

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-07
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1


Query: 37  NLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA 80
           +LL L  N Q+LRQTK+VHA  LLNG+LPHSVSLCASL+L YA
Sbjct: 107 DLLXLSSNVQTLRQTKQVHASALLNGVLPHSVSLCASLMLRYA 149

The following BLAST results are available for this feature:

BLAST of CmoCh20G001390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G001390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEH6_CUCSA	1.8e-17	51.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G428560 PE=4 SV=1	[more]
A0A068UN38_COFCA	1.1e-06	48.53	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030050001 PE=4 SV=1	[more]
W9RP97_9ROSA	1.4e-06	66.67	Uncharacterized protein OS=Morus notabilis GN=L484_002623 PE=4 SV=1	[more]
A0A0J8CRM9_BETVU	1.9e-06	68.00	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g074060 PE=4 S...	[more]
A0A103Y2F8_CYNCS	3.2e-06	59.62	Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus ...	[more]

BLAST of CmoCh20G001390 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh20G001390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445027\|ref\|XP_004140275.1\|	2.6e-17	51.79	PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Cucumis sativu...	[more]
gi\|659097428\|ref\|XP_008449620.1\|	3.5e-14	48.21	PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitoc...	[more]
gi\|1009113601\|ref\|XP_015873236.1\|	2.9e-08	64.81	PREDICTED: pentatricopeptide repeat-containing protein At4g14170-like [Ziziphus ...	[more]
gi\|645219080\|ref\|XP_008233930.1\|	3.8e-08	71.11	PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitoc...	[more]
gi\|658004619\|ref\|XP_008337437.1\|	5.4e-07	72.09	PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitoc...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G001390.1	CmoCh20G001390.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G001390	Cp4.1LG16g08460	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G001390	CsaV3_6G038770	Cucumber (Chinese Long) v3	cmocucB0659

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G001390	Cucurbita moschata (Rifu)	cmocmoB405
CmoCh20G001390	Cucumber (Gy14) v1	cgycmoB0161
CmoCh20G001390	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G001390	Cucurbita maxima (Rimu)	cmacmoB607
CmoCh20G001390	Wild cucumber (PI 183967)	cmocpiB557
CmoCh20G001390	Cucumber (Chinese Long) v2	cmocuB552
CmoCh20G001390	Melon (DHL92) v3.5.1	cmomeB509
CmoCh20G001390	Watermelon (Charleston Gray)	cmowcgB490
CmoCh20G001390	Watermelon (97103) v1	cmowmB520
CmoCh20G001390	Cucurbita pepo (Zucchini)	cmocpeB535
CmoCh20G001390	Bottle gourd (USVL1VR-Ls)	cmolsiB484
CmoCh20G001390	Cucumber (Gy14) v2	cgybcmoB777
CmoCh20G001390	Melon (DHL92) v3.6.1	cmomedB585
CmoCh20G001390	Silver-seed gourd	carcmoB1236
CmoCh20G001390	Watermelon (97103) v2	cmowmbB557
CmoCh20G001390	Wax gourd	cmowgoB0687