CmoCh20G001390.1 (mRNA) Cucurbita moschata (Rifu)

NameCmoCh20G001390.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide (PPR) repeat protein
LocationCmo_Chr20 : 697961 .. 698282 (+)
Sequence length315
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACAGTTTTGTATTCGAAGCTTTAGATTTCACTTCGCTCAAATCGCTCGATTCCAATTCAGAAACTACGTTCGAAGAACAGAGCCAAATTCTTCCGTTCACATCAACCTCCTCACCCTGTGCTTCAACGCTCAATCGCTTCGTCAAACCAAAGAAGTCCACGCCATTTGCCTTCTCAATGGCTTGCTTCCTCATAGTGTATCACTCTGTGCTTCCCTTATTCTTAATTACGCCAAGTTTCAGCACCCAGAATCGTTCTGTACTCTGTTCCATCAAACTGTCCAGAATTGTCGTACTGCGTTCCTGTGGAATACCTTGA

mRNA sequence

ATGTTACAGTTTTGTATTCGAAGCTTTAGATTTCACTTCGCTCAAATCGCTCGATTCCAATTCAGAAACTACGTTCGAAGAACAGAGCCAAATTCTTCCGTTCACATCAACCTCCTCACCCTGTGCTTCAACGCTCAATCGCTTCGTCAAACCAAAGAAGTCCACGCCATTTGCCTTCTCAATGGCTTGCTTCCTCATAGTGTATCACTCTGTGCTTCCCTTATTCTTAATTACGCCAACACCCAGAATCGTTCTGTACTCTGTTCCATCAAACTGTCCAGAATTGTCGTACTGCGTTCCTGTGGAATACCTTGA

Coding sequence (CDS)

ATGTTACAGTTTTGTATTCGAAGCTTTAGATTTCACTTCGCTCAAATCGCTCGATTCCAATTCAGAAACTACGTTCGAAGAACAGAGCCAAATTCTTCCGTTCACATCAACCTCCTCACCCTGTGCTTCAACGCTCAATCGCTTCGTCAAACCAAAGAAGTCCACGCCATTTGCCTTCTCAATGGCTTGCTTCCTCATAGTGTATCACTCTGTGCTTCCCTTATTCTTAATTACGCCAACACCCAGAATCGTTCTGTACTCTGTTCCATCAAACTGTCCAGAATTGTCGTACTGCGTTCCTGTGGAATACCTTGA
BLAST of CmoCh20G001390.1 vs. TrEMBL
Match: A0A0A0KEH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G428560 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 1

Query: 1   MLQFCIRS-----FRFHF-AQIARFQFRNYVR----------------RTEPNSSVHINL 60
           ML+FCIRS       F F +QI RFQ+RN+++                 T+PNS +HINL
Sbjct: 1   MLEFCIRSSIVSPLPFPFPSQIIRFQYRNFLQPILVSALQSPLSPPSSSTDPNSYIHINL 60

Query: 61  LTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI 91
           LTLC   QSL QTK+VHA+ +LNG LP SVSLCASLILNYA  Q+    CS+
Sbjct: 61  LTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSL 112

BLAST of CmoCh20G001390.1 vs. TrEMBL
Match: A0A068UN38_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030050001 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1

Query: 12 HFAQIARFQFRNYVRRTEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLC 71
          HF     F      +   P S    NLL LC + QSL QTK+ HAIC+ +GLLP S+S+C
Sbjct: 19 HFHSHPPFLSPTSAKCRPPLSQPPPNLLPLCASTQSLNQTKQAHAICIHHGLLPSSISIC 78

Query: 72 ASLILNYA 80
          A+LIL YA
Sbjct: 79 AALILRYA 86

BLAST of CmoCh20G001390.1 vs. TrEMBL
Match: W9RP97_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002623 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1

Query: 35 HINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA 80
          H +LL LC  AQSLRQ  ++HA  LLNG LP S+SLCASLIL YA
Sbjct: 44 HSDLLQLCSAAQSLRQANQLHAFALLNGFLPRSLSLCASLILRYA 88

BLAST of CmoCh20G001390.1 vs. TrEMBL
Match: A0A0J8CRM9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g074060 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query: 30 PNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA 80
          PNS   I+LL L  + QSL+QTK+ HA+ LL GLLP SVSLCASLILNYA
Sbjct: 45 PNS---IDLLPLLSSLQSLQQTKQSHALALLYGLLPSSVSLCASLILNYA 91

BLAST of CmoCh20G001390.1 vs. TrEMBL
Match: A0A103Y2F8_CYNCS (Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_020459 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-06
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1

Query: 28 TEPNSSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA 80
          T P  S H N+L LC + +SL QTK+ HAI LL+G LPHS+S+ ASLIL YA
Sbjct: 34 TIPQQSHH-NILPLCSSTESLAQTKQSHAIALLSGYLPHSISISASLILQYA 84

BLAST of CmoCh20G001390.1 vs. NCBI nr
Match: gi|449445027|ref|XP_004140275.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-17
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 1

Query: 1   MLQFCIRS-----FRFHF-AQIARFQFRNYVR----------------RTEPNSSVHINL 60
           ML+FCIRS       F F +QI RFQ+RN+++                 T+PNS +HINL
Sbjct: 1   MLEFCIRSSIVSPLPFPFPSQIIRFQYRNFLQPILVSALQSPLSPPSSSTDPNSYIHINL 60

Query: 61  LTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI 91
           LTLC   QSL QTK+VHA+ +LNG LP SVSLCASLILNYA  Q+    CS+
Sbjct: 61  LTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSL 112

BLAST of CmoCh20G001390.1 vs. NCBI nr
Match: gi|659097428|ref|XP_008449620.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-14
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 1

Query: 1   MLQFCIRS-----FRFHF-AQIARFQFRNYVR----------------RTEPNSSVHINL 60
           ML+ CIRS         F +QI RF++RN+ +                 T+ NS +HINL
Sbjct: 1   MLELCIRSSIVSPLPIPFPSQITRFRYRNFHQPILVSALQSPLSPPSSSTDSNSYIHINL 60

Query: 61  LTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRSVLCSI 91
           LTLC   QSL QTK+VHA+ +LNG LP SVSLCASLILNYA  Q+    CS+
Sbjct: 61  LTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPESFCSL 112

BLAST of CmoCh20G001390.1 vs. NCBI nr
Match: gi|1009113601|ref|XP_015873236.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g14170-like [Ziziphus jujuba])

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-08
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 1

Query: 32  SSVHINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYANTQNRS 86
           +  H +LLTLC N  SLRQT +VHA  LLNGLLP SVSL ASL+LNYA   N S
Sbjct: 49  AQAHSDLLTLCSNLHSLRQTNQVHAFALLNGLLPRSVSLSASLMLNYAMFGNPS 102

BLAST of CmoCh20G001390.1 vs. NCBI nr
Match: gi|645219080|ref|XP_008233930.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Prunus mume])

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1

Query: 35 HINLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA 80
          H ++LTL  N Q+L QTK+VHA  LLNGLLPHSVSLCASL+L+YA
Sbjct: 49 HTDILTLSSNVQTLHQTKQVHASALLNGLLPHSVSLCASLMLSYA 93

BLAST of CmoCh20G001390.1 vs. NCBI nr
Match: gi|658004619|ref|XP_008337437.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Malus domestica])

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-07
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1

Query: 37  NLLTLCFNAQSLRQTKEVHAICLLNGLLPHSVSLCASLILNYA 80
           +LL L  N Q+LRQTK+VHA  LLNG+LPHSVSLCASL+L YA
Sbjct: 107 DLLXLSSNVQTLRQTKQVHASALLNGVLPHSVSLCASLMLRYA 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KEH6_CUCSA1.8e-1751.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G428560 PE=4 SV=1[more]
A0A068UN38_COFCA1.1e-0648.53Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030050001 PE=4 SV=1[more]
W9RP97_9ROSA1.4e-0666.67Uncharacterized protein OS=Morus notabilis GN=L484_002623 PE=4 SV=1[more]
A0A0J8CRM9_BETVU1.9e-0668.00Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g074060 PE=4 S... [more]
A0A103Y2F8_CYNCS3.2e-0659.62Pentatricopeptide repeat-containing protein OS=Cynara cardunculus var. scolymus ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449445027|ref|XP_004140275.1|2.6e-1751.79PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Cucumis sativu... [more]
gi|659097428|ref|XP_008449620.1|3.5e-1448.21PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitoc... [more]
gi|1009113601|ref|XP_015873236.1|2.9e-0864.81PREDICTED: pentatricopeptide repeat-containing protein At4g14170-like [Ziziphus ... [more]
gi|645219080|ref|XP_008233930.1|3.8e-0871.11PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitoc... [more]
gi|658004619|ref|XP_008337437.1|5.4e-0772.09PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitoc... [more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh20G001390CmoCh20G001390gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh20G001390.1CmoCh20G001390.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G001390.1.exon.1CmoCh20G001390.1.exon.1exon
CmoCh20G001390.1.exon.2CmoCh20G001390.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G001390.1.CDS.1CmoCh20G001390.1.CDS.1CDS
CmoCh20G001390.1.CDS.2CmoCh20G001390.1.CDS.2CDS