CmoCh13G000150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G000150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	28S ribosomal S29, mitochondrial
Location	Cmo_Chr13 : 160270 .. 161511 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGCAGTGGGCGCGCTCTTCAGAGTCCGGCGAAACCCGAAACCTCGCGTTCATCTTCATTCTCATTTCCGAGCGCCGGAAAACTTTGAGGTCAATTTTTTAGAGCATCAGCGCTGCCTCTAAGCACCACCTCTGCAATCGAAATCCTTCTCCTACCCTATCTCTTGTTTCAAATTACTCAGCTAAGACCACCAAATCCACCGTTAAGAAGGGCAAGTCCAAGGCCGACGCTAAAGCCGCCGATGATCCCTCCGCCTCCGCTGCTGCTTCAGACGAATTAGATGCGGCGCTTTCTGATGATGATCCCTCATTCGATGTTGGCACATATGGTCGCCCTCTCTTTACCTCCGCATCTTCACTCTCACAGCTCACTCGCAAGGATGCAGGCAATTATTTCTAATTCAAGTACGTATCTGAAGTCGTTTGGATCGCTAACTCATGTTTTTATTATTTTATTTTTGGTCTTTTTAACTCTCGAACCTTGTATGTGCATCAGATTTAGACATGTAGTTTATTGGTATATTTCCTAATTCTATTGACAAAAGTTAAATCTCTCTAACCATGTTTGGAATCTTAACAAGGGAAACGGTCTCTCATGATCATGATTGCTTAGGGTTGCTGGCTGGTTAATGTTTTATGCCAAGTGTTTACTGTCTTGTGATAAGCTTTCAGGAGATCATGTGAGGACTGTGGATAATATGAAACAGTGACCCATTCACTTTACATTGTCCTCTTTGAGCTCTCCCTTTTCAATCGCGTTTATTAGGGAGAGATTTCCACACCCTTATAAAGAATAGTTCGTTCCCCTCTCCAACTGATGTCAATTGCTATGGCTAAGTCAAATTTCTGAACCTATACCGTTGACAGAGGGCATTGGCGTTGGGATGGTGAAAGGGGCTGATTGCATGAGGATGCCTGTGGGTTCAACTGTATATATGACTTAATTGATACTGGAATCAAGCACACTCATGCGGCTGTTGGGGTGGTTGTTCGTTTAAGAAAAGAACTATCGCTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAGTGAGGCACAAATCTAAATCTACCCTTTTTTTGATTTCTAATAGTAAGTTTCTTGGATGAATTAAATCTTCCAAAATTAATTTTAATCGCAATAATAATTGTTACTTCTTGTACAGAATGACAACTGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAG

mRNA sequence

TTAGCAGTGGGCGCGCTCTTCAGAGTCCGGCGAAACCCGAAACCTCGCGTTCATCTTCATTCTCATTTCCGAGCGCCGGAAAACTTTGAGGTCAATTTTTTAGAGCATCAGCGCTGCCTCTAAGCACCACCTCTGCAATCGAAATCCTTCTCCTACCCTATCTCTTGTTTCAAATTACTCAGCTAAGACCACCAAATCCACCGTTAAGAAGGGCAAGTCCAAGGCCGACGCTAAAGCCGCCGATGATCCCTCCGCCTCCGCTGCTGCTTCAGACGAATTAGATGCGGCGCTTTCTGATGATGATCCCTCATTCGATGTTGGCACATATGGTCGCCCTCTCTTTACCTCCGCATCTTCACTCTCACAGCTCACTCGCAAGGATGCAGGCAATTATTTCTAATTCAAAGGGCATTGGCGTTGGGATGGTGAAAGGGGCTGATTGCATGAGGATGCCTGTGGAACTATCGCTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAAATGACAACTGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAG

Coding sequence (CDS)

ATGCGGCGCTTTCTGATGATGATCCCTCATTCGATGTTGGCACATATGGTCGCCCTCTCTTTACCTCCGCATCTTCACTCTCACAGCTCACTCGCAAGGATGCAGGCAATTATTTCTAATTCAAAGGGCATTGGCGTTGGGATGGTGAAAGGGGCTGATTGCATGAGGATGCCTGTGGAACTATCGCTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAAATGACAACTGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAG

Homology

[Close]

BLAST of CmoCh13G000150 vs. TrEMBL
Match: A0A0A0LVC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533720 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-14
Identity = 48/83 (57.83%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 42  KGIGVGMVKGADCMRMPV---------------------------ELSLVKDIPVLIAID 98
           +G GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 272 EGAGVGMAKGADSMRMPEGSTLYDLIDTGIKHTHVAVGVVVRLRKELSLVKDIPVLIAID 331

[Close]

BLAST of CmoCh13G000150 vs. TrEMBL
Match: A0A0A0KG66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G310480 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-14
Identity = 48/83 (57.83%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 42  KGIGVGMVKGADCMRMPV---------------------------ELSLVKDIPVLIAID 98
           +G GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 272 EGAGVGMAKGADSMRMPEGSTLYDLIDTGIKHTHVAVGVVVRLRKELSLVKDIPVLIAID 331

[Close]

BLAST of CmoCh13G000150 vs. TrEMBL
Match: A0A067E5Y9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045329mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-11
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 42  KGIGVGMVKGADC---------------------------MRMPVELSLVKDIPVLIAID 98
           +G GVG++KG D                            +R+  ELSLVKDIPVLIAID
Sbjct: 281 EGAGVGLLKGVDSKEISEGSTLFDLVQMGINQMHASVGVVVRLRKELSLVKDIPVLIAID 340

[Close]

BLAST of CmoCh13G000150 vs. TrEMBL
Match: V4T1I9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001075mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-11
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 42  KGIGVGMVKGADC---------------------------MRMPVELSLVKDIPVLIAID 98
           +G GVG++KG D                            +R+  ELSLVKDIPVLIAID
Sbjct: 281 EGAGVGLLKGVDSKEISEGSTLFDLVQMGINQMHASVGVVVRLRKELSLVKDIPVLIAID 340

[Close]

BLAST of CmoCh13G000150 vs. TrEMBL
Match: V4T6Q6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001075mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-11
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 42  KGIGVGMVKGADC---------------------------MRMPVELSLVKDIPVLIAID 98
           +G GVG++KG D                            +R+  ELSLVKDIPVLIAID
Sbjct: 281 EGAGVGLLKGVDSKEISEGSTLFDLVQMGINQMHASVGVVVRLRKELSLVKDIPVLIAID 340

[Close]

BLAST of CmoCh13G000150 vs. TAIR10
Match: AT1G16870.1 (AT1G16870.1 mitochondrial 28S ribosomal protein S29-related)

HSP 1 Score: 63.9 bits (154), Expect = 6.3e-11
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1


Query: 55  MRMPVELSLVKDIPVLIAIDQNDNWFTFSEYEEPVTVRSTPPI 98
           +R+  ELS+VKD+PVLI IDQ ++WFTFSE+EEPVT RS  PI
Sbjct: 337 VRLRKELSVVKDVPVLIVIDQYNSWFTFSEFEEPVTPRSCRPI 379

[Close]

BLAST of CmoCh13G000150 vs. NCBI nr
Match: gi|659114941|ref|XP_008457304.1| (PREDICTED: 28S ribosomal protein S29, mitochondrial [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 48/83 (57.83%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 42  KGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVLIAID 98
           +G+GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 271 EGVGVGMAKGADSMRMPDGSTLYDLIDTGIKHTHAAVGVVVRLRKELSLVKDIPVLIAID 330

[Close]

BLAST of CmoCh13G000150 vs. NCBI nr
Match: gi|778714640|ref|XP_011657272.1| (PREDICTED: 28S ribosomal protein S29, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 9.7e-14
Identity = 48/83 (57.83%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 42  KGIGVGMVKGADCMRMPV---------------------------ELSLVKDIPVLIAID 98
           +G GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 272 EGAGVGMAKGADSMRMPEGSTLYDLIDTGIKHTHVAVGVVVRLRKELSLVKDIPVLIAID 331

[Close]

BLAST of CmoCh13G000150 vs. NCBI nr
Match: gi|778661865|ref|XP_004145300.2| (PREDICTED: 28S ribosomal protein S29, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 9.7e-14
Identity = 48/83 (57.83%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 42  KGIGVGMVKGADCMRMPV---------------------------ELSLVKDIPVLIAID 98
           +G GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 272 EGAGVGMAKGADSMRMPEGSTLYDLIDTGIKHTHVAVGVVVRLRKELSLVKDIPVLIAID 331

[Close]

BLAST of CmoCh13G000150 vs. NCBI nr
Match: gi|641830179|gb|KDO49275.1| (hypothetical protein CISIN_1g045329mg [Citrus sinensis])

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-11
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 42  KGIGVGMVKGADC---------------------------MRMPVELSLVKDIPVLIAID 98
           +G GVG++KG D                            +R+  ELSLVKDIPVLIAID
Sbjct: 281 EGAGVGLLKGVDSKEISEGSTLFDLVQMGINQMHASVGVVVRLRKELSLVKDIPVLIAID 340

[Close]

BLAST of CmoCh13G000150 vs. NCBI nr
Match: gi|567878823|ref|XP_006431970.1| (hypothetical protein CICLE_v10001075mg [Citrus clementina])

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-11
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 42  KGIGVGMVKGADC---------------------------MRMPVELSLVKDIPVLIAID 98
           +G GVG++KG D                            +R+  ELSLVKDIPVLIAID
Sbjct: 281 EGAGVGLLKGVDSKEISEGSTLFDLVQMGINQMHASVGVVVRLRKELSLVKDIPVLIAID 340

The following BLAST results are available for this feature:

BLAST of CmoCh13G000150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G000150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVC2_CUCSA	6.8e-14	57.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533720 PE=4 SV=1	[more]
A0A0A0KG66_CUCSA	6.8e-14	57.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G310480 PE=4 SV=1	[more]
A0A067E5Y9_CITSI	4.1e-11	49.40	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045329mg PE=4 SV=1	[more]
V4T1I9_9ROSI	4.1e-11	49.40	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001075mg PE=4 SV=1	[more]
V4T6Q6_9ROSI	4.1e-11	49.40	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001075mg PE=4 SV=1	[more]

BLAST of CmoCh13G000150 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16870.1	6.3e-11	67.44	mitochondrial 28S ribosomal protein S29-related	[more]

BLAST of CmoCh13G000150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114941\|ref\|XP_008457304.1\|	3.3e-14	57.83	PREDICTED: 28S ribosomal protein S29, mitochondrial [Cucumis melo]	[more]
gi\|778714640\|ref\|XP_011657272.1\|	9.7e-14	57.83	PREDICTED: 28S ribosomal protein S29, mitochondrial-like [Cucumis sativus]	[more]
gi\|778661865\|ref\|XP_004145300.2\|	9.7e-14	57.83	PREDICTED: 28S ribosomal protein S29, mitochondrial-like [Cucumis sativus]	[more]
gi\|641830179\|gb\|KDO49275.1\|	5.9e-11	49.40	hypothetical protein CISIN_1g045329mg [Citrus sinensis]	[more]
gi\|567878823\|ref\|XP_006431970.1\|	5.9e-11	49.40	hypothetical protein CICLE_v10001075mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009165	nucleotide biosynthetic process
biological_process	GO:1901566	organonitrogen compound biosynthetic process
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G000150.1	CmoCh13G000150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G000150	Cucsa.152040	Cucumber (Gy14) v1	cgycmoB0418
CmoCh13G000150	CmaCh13G000250	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G000150	CmaCh01G007140	Cucurbita maxima (Rimu)	cmacmoB458
CmoCh13G000150	Cla008107	Watermelon (97103) v1	cmowmB179
CmoCh13G000150	Csa1G533720	Cucumber (Chinese Long) v2	cmocuB204
CmoCh13G000150	MELO3C020493	Melon (DHL92) v3.5.1	cmomeB187
CmoCh13G000150	ClCG03G000160	Watermelon (Charleston Gray)	cmowcgB190
CmoCh13G000150	CSPI01G24460	Wild cucumber (PI 183967)	cmocpiB201
CmoCh13G000150	Lsi02G012210	Bottle gourd (USVL1VR-Ls)	cmolsiB201
CmoCh13G000150	Cp4.1LG20g07780	Cucurbita pepo (Zucchini)	cmocpeB202
CmoCh13G000150	Cp4.1LG02g11100	Cucurbita pepo (Zucchini)	cmocpeB206
CmoCh13G000150	MELO3C020493.2	Melon (DHL92) v3.6.1	cmomedB211
CmoCh13G000150	CsaV3_1G036740	Cucumber (Chinese Long) v3	cmocucB0236
CmoCh13G000150	Cla97C03G050970	Watermelon (97103) v2	cmowmbB215
CmoCh13G000150	Bhi08G000356	Wax gourd	cmowgoB0245
CmoCh13G000150	CsGy1G023920	Cucumber (Gy14) v2	cgybcmoB069
CmoCh13G000150	Carg07030	Silver-seed gourd	carcmoB0705
CmoCh13G000150	Carg26957	Silver-seed gourd	carcmoB0453

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G000150	CmoCh01G007410	Cucurbita moschata (Rifu)	cmocmoB173

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G000150	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G000150	Cucumber (Chinese Long) v3	cmocucB0232
CmoCh13G000150	Watermelon (97103) v2	cmowmbB209
CmoCh13G000150	Wax gourd	cmowgoB0269
CmoCh13G000150	Cucumber (Chinese Long) v2	cmocuB197
CmoCh13G000150	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G000150	Watermelon (Charleston Gray)	cmowcgB184
CmoCh13G000150	Watermelon (97103) v1	cmowmB173
CmoCh13G000150	Bottle gourd (USVL1VR-Ls)	cmolsiB191