Carg26957 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26957
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	28S ribosomal protein S29, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_449 : 33490 .. 36438 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTATATCGCCCGCTAACATGGTGGTTCACGTTCAGGGCCTTCGGCTTACAGAGAATCACGGAGCAACGGACAGAAATCTGGTTTTCCGAATGCGCAGTGAGAAGGAAACTTGTCGGAAGCAGAATAGAGCCCTATCAAGCAAAAGGCTCTAGATCGTACTCCAAAATTTCCTTGGGCTGAGGCCTAAATGGTCCAACAAGAATCACAATTTCATTGGGCTGAGGCCTTTCTCAACTAGCAAAAGTACCATTCTATCCCCGAAACATAGAAATATAGCAACTTTTACCCCATCTGCTTGGCGCCGTGTTAGGCTGTTAGCAGTGGGCGCGCTCTTCAGAGTCCGGCGAAACCCGAAACCTCGCGTTCATCTTCATTCTCATTTCCGAGCGCCGGAAAATTTTGAGGTCAATTTTTTAGAGCATCAGCGCTGCCTCTAAGCACCACCTCTGCAATCGAAATCCTTCTCCTACCCTATCTCTTGTTTCAAATTACTCAGCTAAGACCACCAAATCCACCGTTAAGAAGGGCAAGTCCAAGGCCGACGCTAAAGCCGCCAATGATCCCTCCGCCTCCGCTGCTGCTTCAAACGAACTAGATGCGGCGCTTTCTGATGATGATCCCTCATTCGATGTTGGCACATATGGTCGCCCTCTCTTTACCTCCGCATCTTCACTCTCACAGCTCACTCGCAAGGATGCAGGCAATTATTTCTAATTCGAGTACGTATCTGAAGTCGTTTGGATCGCTAACTCATGTTTTTATTATTTTATTTTTGGTCTTCTTAACTCTCGAACCTTGTATGTGCATCAGATTTAGACATGTAGTTTATTGATATATTTCCTAATTGTTTGGAATCTTAACAAGGGAAACGATCTCTCATGATCATGATTGCTTAGGGTTGCTGGCTGGTTAATGTTTTATGCCAAGTGTTTACTGTCTTTGTGATAAGCTTTCAGGAGATCATGTGAGGACTGTGGATAATATGAAACAGTGACCCATTTACTTTACATTGTCCTCTTTGAGCTTTCCCTTTTCAATCGCGTTTATTAGAGAGAGATTTCCACACCTTATCAATAGTTCGTTCCTCACTCCAACTGATGTCAATTGCTATTGCTATGCCAAATTTGTGAACCTATACCGTTGACAGAGGGCATTGGCGTTGGGATGGTGAAAGGGGCTGATTGCATGAGGATGCCTGTGGGTTCAACTGTATATATGACTTAATTGATACGGGAATCAAGCACACACTCATGCGGCTGTTGGGGTGGTAGTTCGTTTACTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAGTGAGGCACAAATCTAAATCTACCCTTTTTTTGATTTCTAATAGTAAGTTTCTTGGATGAATTAAATCTTCCAAAATTAATTTTAATCGCAATAATATTATTGTTACTTCTTGTACAGAATGACAAGTGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAGAGAACTTGCAATGGTCAGTACTAAGAACTTGTTTGATTCATTTCGTTGTCTTCCATCCTTTTTGTAGCTTGTATGGATTCCATGGCCTGAAAATTTTAATTTTTGCTGTGAAACTTACGTCCCTCATTTCTTTTATTTATTTTTCTGGTTAAATGTTCGGGACTAAAAAATAACAGATAGCTTTCTCTTCTCCTTTCTATTAGATACCTTCCCAATTTACAATGGGGGAGGATAACCATAGAAAGCGAAAATATTAGACAGTTAATGTAATGACCTGACTTTCTGCACATGTATTGGTCGGTGTCGTCACTTAACAACAAAAAAATTATAATTTAAAATACATGCAAACATGCTAAAGATAATTTACAAGAAAAAGTCATAGCTTGGGTTACCCCTTTCTAAATAATTTTAAAACATGGAATTTAAATAAATAGTTTCACAATAAGGTAATTAAACAAAACGTTCCCATAAACTACGGATGTTCAAACCAAACTTAAAATAATAAAATCAATTAAATGGGGAAGCGTCTTAAATAATAAATTAGAATATAAAACTCTAAGTTGTCTCATGACCGTCATGACCCTGCTCGTCATTTCTATGATACAGTCTTGCCCTTACCTGAAAATCATTTTAAAACAGGATGAGTATGTAAATACCCTTTCAATTTCAACCAATCTGTAGTTGTGCACGCAGCCCGAGGACTCTCACCCCGCCACTTGAGTCTAGGGTATTTTCATATGTACCCTGCTTGGTTCAAATTTTCAACCAGTTTTTAAATTTTTAATGTTGTTTTGGAGGAGGAAAACTTGGATCATATTCTTTGAAGATGTTCTTTTGCTTGATCTATTTGGAGGTTTTTATTGACGTGTTTTGTATTCAATTAACTAGACACTAGGAGTTCCTTTCTCCATCCATTGTTTTGAGAGAGGGGGAGGTTCCTGTGGCAAGCCGTGGTTTGTGCTTTGTTATGGGGTCTTTGGGAGGAGAAGAACAATAGAACATGAAGAGGAGTTGAGAGGAGTCCTTGTGACGTTTGATCCTTCTTCAGGGTCTATGTTTCTCTTTGGGGGTTGATGACAAAGTCTTTGTCTAACTATTACATAGTTTTATTCTTCTTGATTGGCATCCCTTGGGCTCTCTTTCGCAGGTAAAAGCTTTTATTTTAGGTCTATGATGCAGGATGGCATGATGGTTGGTGCTTTATCCCATTCAACTGCTGTAGGAAAGTTGCTTCAAGACTTGCCAGATGTTCCTCTAGGTGCACGTGTTAATTTCCCTTGCTATAGTCTAGATGAAGCGGCTTCTGTTTTCCAATTTCCAGTACTACCACAGGTATGCTTATATTGTTGTTATTTTGTTTGGTGAAGGATTTAGATTATGCCCCAATTTGGATATTAGAGGAAATAAGAGTTTTAAGGAGTTAGCTGTCTTAACGTT

mRNA sequence

GGTATATCGCCCGCTAACATGGTGGTTCACGTTCAGGGCCTTCGGCTTACAGAGAATCACGGAGCAACGGACAGAAATCTGGTTTTCCGAATGCGCACTAAGACCACCAAATCCACCGTTAAGAAGGGCAAGTCCAAGGCCGACGCTAAAGCCGCCAATGATCCCTCCGCCTCCGCTGCTGCTTCAAACGAACTAGATGCGGCGCTTTCTGATGATGATCCCTCATTCGATGTTGGCACATATGCACACACTCATGCGGCTGTTGGGGTGGTAGTTCGTTTACTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAAATGACAAGTGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAGAGAACTTGCAATGGTAAAAGCTTTTATTTTAGGTCTATGATGCAGGATGGCATGATGGTTGGTGCTTTATCCCATTCAACTGCTGTAGGAAAGTTGCTTCAAGACTTGCCAGATGTTCCTCTAGGTGCACGTGTTAATTTCCCTTGCTATAGTCTAGATGAAGCGGCTTCTGTTTTCCAATTTCCAGTACTACCACAGGTATGCTTATATTGTTGTTATTTTGTTTGGTGAAGGATTTAGATTATGCCCCAATTTGGATATTAGAGGAAATAAGAGTTTTAAGGAGTTAGCTGTCTTAACGTT

Coding sequence (CDS)

GGTATATCGCCCGCTAACATGGTGGTTCACGTTCAGGGCCTTCGGCTTACAGAGAATCACGGAGCAACGGACAGAAATCTGGTTTTCCGAATGCGCACTAAGACCACCAAATCCACCGTTAAGAAGGGCAAGTCCAAGGCCGACGCTAAAGCCGCCAATGATCCCTCCGCCTCCGCTGCTGCTTCAAACGAACTAGATGCGGCGCTTTCTGATGATGATCCCTCATTCGATGTTGGCACATATGCACACACTCATGCGGCTGTTGGGGTGGTAGTTCGTTTACTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAAATGACAAGTGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAG

Protein sequence

GISPANMVVHVQGLRLTENHGATDRNLVFRMRTKTTKSTVKKGKSKADAKAANDPSASAAASNELDAALSDDDPSFDVGTYAHTHAAVGVVVRLLVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPIRC

Homology

[Close]

BLAST of Carg26957 vs. NCBI nr
Match: PQP98533.1 (28S ribosomal protein S29 mitochondrial [Prunus yedoensis var. nudiflora])

HSP 1 Score: 84.0 bits (206), Expect = 4.3e-13
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 68  ALSDDDPSFDV--GTYAHTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEP 127
           A+ DD   +D+      HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEP
Sbjct: 280 AMPDDSTLYDLVDTGIKHTHAAVGVVVRLRKELSLVKDIPVLIAIDQYNSWFTFSEYEEP 339

Query: 128 VTVRSTPPI 130
           VTVRST PI
Sbjct: 340 VTVRSTRPI 348

[Close]

BLAST of Carg26957 vs. NCBI nr
Match: XP_008230816.1 (PREDICTED: 28S ribosomal protein S29, mitochondrial [Prunus mume])

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 83  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI 130
           HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Sbjct: 297 HTHAAVGVVVRLRKELSLVKDIPVLIAIDQYNSWFTFSEYEEPVTVRSTRPI 348

[Close]

BLAST of Carg26957 vs. NCBI nr
Match: XP_008457304.1 (PREDICTED: 28S ribosomal protein S29, mitochondrial [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 83  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI 130
           HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Sbjct: 302 HTHAAVGVVVRLRKELSLVKDIPVLIAIDQYNNWFTFSEYEEPVTVRSTRPI 353

[Close]

BLAST of Carg26957 vs. NCBI nr
Match: XP_007205230.2 (28S ribosomal protein S29, mitochondrial [Prunus persica] >ONH99728.1 hypothetical protein PRUPE_6G046100 [Prunus persica])

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 83  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI 130
           HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Sbjct: 297 HTHAAVGVVVRLRKELSLVKDIPVLIAIDQYNSWFTFSEYEEPVTVRSTRPI 348

[Close]

BLAST of Carg26957 vs. NCBI nr
Match: XP_021810570.1 (28S ribosomal protein S29, mitochondrial [Prunus avium])

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 83  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI 130
           HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Sbjct: 297 HTHAAVGVVVRLRKELSLVKDIPVLIAIDQYNSWFTFSEYEEPVTVRSTRPI 348

[Close]

BLAST of Carg26957 vs. TAIR10
Match: AT1G16870.1 (mitochondrial 28S ribosomal protein S29-related)

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-12
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 84  THAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI 130
           THAAV VVVRL     +VKD+PVLI IDQ + WFTFSE+EEPVT RS  PI
Sbjct: 329 THAAVNVVVRLRKELSVVKDVPVLIVIDQYNSWFTFSEFEEPVTPRSCRPI 379

[Close]

BLAST of Carg26957 vs. TrEMBL
Match: tr|A0A251NK78|A0A251NK78_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G046100 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 83  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI 130
           HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Sbjct: 297 HTHAAVGVVVRLRKELSLVKDIPVLIAIDQYNSWFTFSEYEEPVTVRSTRPI 348

[Close]

BLAST of Carg26957 vs. TrEMBL
Match: tr|M5VYB8|M5VYB8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa006017mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 83  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI 130
           HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Sbjct: 272 HTHAAVGVVVRLRKELSLVKDIPVLIAIDQYNSWFTFSEYEEPVTVRSTRPI 323

[Close]

BLAST of Carg26957 vs. TrEMBL
Match: tr|A0A1S3C6G8|A0A1S3C6G8_CUCME (28S ribosomal protein S29, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497026 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 83  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI 130
           HTHAAVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Sbjct: 302 HTHAAVGVVVRLRKELSLVKDIPVLIAIDQYNNWFTFSEYEEPVTVRSTRPI 353

[Close]

BLAST of Carg26957 vs. TrEMBL
Match: tr|A0A0A0KG66|A0A0A0KG66_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G310480 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 83  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI 130
           HTH AVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Sbjct: 303 HTHVAVGVVVRLRKELSLVKDIPVLIAIDQYNNWFTFSEYEEPVTVRSTRPI 354

[Close]

BLAST of Carg26957 vs. TrEMBL
Match: tr|A0A0A0LVC2|A0A0A0LVC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533720 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 83  HTHAAVGVVVRL-----LVKDIPVLIAIDQNDKWFTFSEYEEPVTVRSTPPI 130
           HTH AVGVVVRL     LVKDIPVLIAIDQ + WFTFSEYEEPVTVRST PI
Sbjct: 303 HTHVAVGVVVRLRKELSLVKDIPVLIAIDQYNNWFTFSEYEEPVTVRSTRPI 354

HSP 2 Score: 53.1 bits (126), Expect = 5.3e-04
Identity = 43/81 (53.09%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 14 LRLTENHGATDRNLVFRMRTKTTKSTV---KKGKSKADAKAANDPSASAAASNELDAALS 73
          L LT N+ A           KTTKS V   KKGKS+ADAKA +DPSA AAASN+LDAALS
Sbjct: 26 LSLTSNYSA-----------KTTKSPVKKGKKGKSEADAKAGDDPSAPAAASNDLDAALS 85

Query: 74 DD------------DPSFDVG 80
          DD            D S DVG
Sbjct: 86 DDKIRARRLAAEENDTSLDVG 95

The following BLAST results are available for this feature:

BLAST of Carg26957 vs. NCBI nr


Match Name	E-value	Identity	Description
PQP98533.1	4.3e-13	68.12	28S ribosomal protein S29 mitochondrial [Prunus yedoensis var. nudiflora]	[more]
XP_008230816.1	9.5e-13	82.69	PREDICTED: 28S ribosomal protein S29, mitochondrial [Prunus mume]	[more]
XP_008457304.1	9.5e-13	82.69	PREDICTED: 28S ribosomal protein S29, mitochondrial [Cucumis melo]	[more]
XP_007205230.2	9.5e-13	82.69	28S ribosomal protein S29, mitochondrial [Prunus persica] >ONH99728.1 hypothetic...	[more]
XP_021810570.1	9.5e-13	82.69	28S ribosomal protein S29, mitochondrial [Prunus avium]	[more]

BLAST of Carg26957 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16870.1	5.7e-12	68.63	mitochondrial 28S ribosomal protein S29-related	[more]

BLAST of Carg26957 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26957 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251NK78\|A0A251NK78_PRUPE	6.3e-13	82.69	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G046100 PE=4 SV=1	[more]
tr\|M5VYB8\|M5VYB8_PRUPE	6.3e-13	82.69	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa006017mg PE=4 SV=1	[more]
tr\|A0A1S3C6G8\|A0A1S3C6G8_CUCME	6.3e-13	82.69	28S ribosomal protein S29, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497026...	[more]
tr\|A0A0A0KG66\|A0A0A0KG66_CUCSA	1.8e-12	80.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G310480 PE=4 SV=1	[more]
tr\|A0A0A0LVC2\|A0A0A0LVC2_CUCSA	1.8e-12	80.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533720 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26957-RA	Carg26957-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..65

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26957	Cla008107	Watermelon (97103) v1	carwmB0319
Carg26957	Csa1G533720	Cucumber (Chinese Long) v2	carcuB0358
Carg26957	MELO3C020493	Melon (DHL92) v3.5.1	carmeB0335
Carg26957	ClCG03G000160	Watermelon (Charleston Gray)	carwcgB0321
Carg26957	CSPI01G24460	Wild cucumber (PI 183967)	carcpiB0362
Carg26957	CmaCh01G007140	Cucurbita maxima (Rimu)	carcmaB0463
Carg26957	CmaCh13G000250	Cucurbita maxima (Rimu)	carcmaB0462
Carg26957	CmoCh01G007410	Cucurbita moschata (Rifu)	carcmoB0454
Carg26957	CmoCh13G000150	Cucurbita moschata (Rifu)	carcmoB0453
Carg26957	Lsi02G012210	Bottle gourd (USVL1VR-Ls)	carlsiB302
Carg26957	Cp4.1LG20g07780	Cucurbita pepo (Zucchini)	carcpeB0459
Carg26957	Cp4.1LG02g11100	Cucurbita pepo (Zucchini)	carcpeB0460
Carg26957	MELO3C020493.2	Melon (DHL92) v3.6.1	carmedB0343
Carg26957	CsaV3_1G036740	Cucumber (Chinese Long) v3	carcucB0362
Carg26957	Cla97C03G050970	Watermelon (97103) v2	carwmbB0338
Carg26957	Bhi08G000356	Wax gourd	carwgoB0414

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26957	Carg07030	Silver-seed gourd	carcarB350

The following block(s) are covering this gene:

None