CmoCh12G002080 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTGGGCTTTTTAACCCAAATGTTGACTATTGTGGGCCTATTGGGCTGACAGGTGCTTCCCTTTCCCATTTTGGGCTGGGTTCGGGTGAATATTGTGGGCTTCTAAACCAAAATGTTGCCTATTGTGGGCCAATTGGGCTGACAGCTGCGTCCCCGGGCCACCTTGGGCTGGGTTCGGGTCAATTTTTTGGGCTTTTTAACCCGAATGTTGCCTATTGTGGGCCAATTGGGTTGACTGCTTCGTCCCTGGGCCACCTTCGGCTTGGTTCGATGAATGTTTTGGGCTTTTTTGCCCAAATGTTTCCTATTATAGGCCAATTGGGCTTTGGATGATGTTCGATATTTAATCTCGGATTTCGTATTTTTAATTTCTTCTATAATATTAAAGTGTGTGTATTTTCAATAACTCTTAAAAATAGTCTAATTACTGATTGTAATTAGTTTTTAACCAAATCGTTTAATTATTAATAATTATTTTGATGCAGTAAAAACATCCTTTTAAAACATTTTGATAAAGGAAAAATGAAAAGAGACTATATATATATATATATATATATATATATTGCAATAATTAAATTAATTAATATTGTAGGGACTAATTTTAACGTACTATTTTANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGTTAATTTAGCCTTTTTTTTTGCCGGTAAACTGGGAATTAGAAGAAAAAGACACTTTTGCCCTAGTCTCGTCTTCTCCTTCAGTCTCTCTCAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGTTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGTCTCTCCGTCTTCAACCATCTCTTCTTAGTTCTTGTTTCATTAGTTTGTGAGTTCGTTCGATTTCGGGAACTTTTCGTATGAGTGGTTTGTTTAATCTGGATTTTACAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGTACGTTTCTTTATTTTCTTATTCACTTTGTTTTATCCATCTCTAAATCGTATGATAAAGTTCTTATTCCATGAATATTTGTAGTTCAGTAAATTTCTTACGTGTTATTGCCATTCAAAGTACGGCTTTCAATGAACATACTGTCTAGTTTTTGTACCTTATTGATTCTGAAGCAGGCTATGGATGATATTCTCTGAATCTCATCAATGCATCCTCTTACATTTGATAATGTATTAGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTGAGTCCATTTTCCCCCCTTTTTGGTTCAAGATTCATGTGATATATTGCTGGTCTTTTGATGTTTAAAAAGTAATATACATGAAATAGGTATCTCAAAATCTTGTTGAAGGTAACCAATCTCTGAACCAGCATAAAAGATGCACAATCTTAAAGTTTAAAATTTAACATTACGTTCTATACATTCATATATGGAAAGTAATGTTATTACTCATGCTTGGGACTTAGCAAATTCCCTTCATTCCAATCTTCCTTTAGTCTGAACGAACACGTTTATTAAGATTTTTTGCTTGACTACTCCGAACATGGATATTTACATAGCCAGCGCATGTTACATCATTTTATTTTGTATCTGAAACTTCTAAATAGTATGTATAAGAAATAAGTAGCTGGAACATGCTATTATGTTACTGAAACTTCTGTTGCTGGAAAAGTGTAAATATTCTAAAACCGTCAAGAACAACCTCGATGCGAAATTGTTCGTTGTAGGAAATTAACACCTTTTCATTTTCCATATCATGAAAAATGTTTTGGACTGTCAGCTTTGAAATACATTATGTTTAGGGCATTTATACTAATAATGTTGCAACTAGTTTCTTATCTCAAATACATTGATATTTCCCCCTGTAATTGCAGGTTATTCATGATGATGGAGCTGTATCCCTTGTGATTTAATACCTCGTTTTTAGATTACTAAAAATAATGTTAGGAAAATATAAGTATGTTAAGACACGTAATTCATGTCATCGTGATCCTATTCAAACTGATTTACTAACGCTATCCTTGAAAGTCGAACATGGGTCGAAGTTCTCACAGCTACATTATAGGTGCTCTAACCAATTATGCTATATGAGAGCTGATTCACGTTAATCTTACCACGGGGAACTACTGTTTTGTCGAGGAAAAGGGAAGAACTAGGGCCTACATATCAACATGGACAGTTCTTTTATCTGGTTATTGGGTCAAAAATCTAGATATTCTGTGATCCCCTGCCTAGGGACACGGTGGAAGAGCTCCCCTAATATATCACATTGATTTTTCTTTTAAATTTGAAGTGGCATTTGTTTAAAATGTTCCAATGTCATGCCACTGTAAAAAAAATGTTTTTTTTTACCTTGTATAGGTTTGATATTCTGTCAACTTATGTACCACACATGAGAATTATTTTTTCTTTATTTGTGGGAATGCCTTTCTTGAAATATCTTCATGAAGAACTTCTTTGACAGAGCCCTCAAATAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCCTTAAAGCATCTTGCTGGTAATCAGAATTTATGGTCTTATTATTCATGGCTTCACTTGATAAATTAATGGTTGGCACTGACTTCTCTGCACTGCATATTGCAGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGGTTGGTAAATTTACTTATTGAATTGTCAATGCTTGTCCAATTTTGCAGTTACTTTTTGTATGCATGATAAAAAGCATAGATATGGACCATATGCAAATTTGCCATGCTAGGGGTTGGCTAAGTAGTTACACATTATTGAATTTATCAAAGAAAATGAGAAAAAGTGAAAATTGTCGAACTTGATTATCAAACGAGTGATTTTTAAAGAAAAGTGAACTCGAAATGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAATGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGGTATGTTGTGCACGAAACCAAGCTATGTTCCAGTAGTCGTAATTGAAGATGTGCATGTTTGTATTATGTTTGAATTTTAGGACGTCAATGAGGATTTTTGGGAGAGGAGTCCCACGTTAGCTAATTAAAGAGTTGATCATGGGTTTATAAGTAAGAAAATACATCTTCATTGGTTTGAGGCCTTTTGGAGAAACTAAAAGTAAAGTCACGAGAGCTTAAGTTCAAAGTGGACAATGTCATACCACTGTGGTGAGTCGTTGTTCTTAACACCAATAAGCTCATACTTGAGTATTCACTTCTATATTGTGTTAATGATCACGTATTTTTACACCAAGAGCTGAACTCATCTTTATCCGTGGCACTGATACATTTTGAACACGTATCTGGCTCACCCCTTTTGTAACCCACAGCAAATTTCTTGTTTCTTTTGCTTTTTTTTTCATTCACGATCTTCATTTTCTTGACACCATGGCACACTTCGATGGACAAAATAAACCATTTATTAGCAATGGATACGGCATATTTCTCTCATCATGTCATGTACTTTCTATCTAATGCCGTTTTGTGATCGAAAATGTACTTGGATCTTATTATAGCATCAAATGTCAAAACGGCTACAGTTAGTCATCTCTTGGGTTACCAATGGAATCTGAAAAATGTGAATGTTAGATAGAAAAACAAGCATGGGATCTAATTATTGTTGTTGTTTATCTGAAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGATTGGATCCAAGTCCTTGCCTATGAATTGTGCTCCACGACATAATCTGGCTTGGGAAGGTATCGTCTGTTGTATGATTTATTTTTATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGAGTTCTCAGTGGATTTGATTGATGCATTGTACGTTTACTCTTTTTTTGTTGTGCATTTGTTTGATATTCTAG ATGTTTGGGCTTTTTAACCCAAATGTTGACTATTGTGGGCCTATTGGGCTGACAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGTTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTGTATCCCTTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCCTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAATGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGATTGGATCCAAGTCCTTGCCTATGAATTGTGCTCCACGACATAATCTGGCTTGGGAAGGTATCGTCTGTTGTATGATTTATTTTTATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGAGTTCTCAGTGGATTTGATTGATGCATTGTACGTTTACTCTTTTTTTGTTGTGCATTTGTTTGATATTCTAG ATGTTTGGGCTTTTTAACCCAAATGTTGACTATTGTGGGCCTATTGGGCTGACAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGTTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTGTATCCCTTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCCTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAATGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGA
BLAST of CmoCh12G002080 vs. Swiss-Prot
Match: EXOS5_ARATH (Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana GN=RRP46 PE=2 SV=1) HSP 1 Score: 365.9 bits (938), Expect = 4.3e-100 Identity = 178/246 (72.36%), Postives = 212/246 (86.18%), Query Frame = 1
BLAST of CmoCh12G002080 vs. Swiss-Prot
Match: EXOS5_ORYSJ (Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica GN=RRP46 PE=1 SV=2) HSP 1 Score: 294.7 bits (753), Expect = 1.2e-78 Identity = 152/241 (63.07%), Postives = 184/241 (76.35%), Query Frame = 1
BLAST of CmoCh12G002080 vs. Swiss-Prot
Match: EXOS5_HUMAN (Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 1.1e-31 Identity = 80/222 (36.04%), Postives = 126/222 (56.76%), Query Frame = 1
BLAST of CmoCh12G002080 vs. Swiss-Prot
Match: EXOS5_MOUSE (Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 9.5e-31 Identity = 78/222 (35.14%), Postives = 124/222 (55.86%), Query Frame = 1
BLAST of CmoCh12G002080 vs. Swiss-Prot
Match: RRP41_SULAC (Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rrp41 PE=3 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 5.6e-15 Identity = 65/240 (27.08%), Postives = 118/240 (49.17%), Query Frame = 1
BLAST of CmoCh12G002080 vs. TrEMBL
Match: A0A0A0LLJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374620 PE=4 SV=1) HSP 1 Score: 452.6 bits (1163), Expect = 3.9e-124 Identity = 226/246 (91.87%), Postives = 236/246 (95.93%), Query Frame = 1
BLAST of CmoCh12G002080 vs. TrEMBL
Match: M5XGB7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010603mg PE=4 SV=1) HSP 1 Score: 411.8 bits (1057), Expect = 7.6e-112 Identity = 204/246 (82.93%), Postives = 225/246 (91.46%), Query Frame = 1
BLAST of CmoCh12G002080 vs. TrEMBL
Match: V4TTQ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009310mg PE=4 SV=1) HSP 1 Score: 401.4 bits (1030), Expect = 1.0e-108 Identity = 198/246 (80.49%), Postives = 223/246 (90.65%), Query Frame = 1
BLAST of CmoCh12G002080 vs. TrEMBL
Match: A0A067GWW3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024064mg PE=4 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-107 Identity = 196/244 (80.33%), Postives = 221/244 (90.57%), Query Frame = 1
BLAST of CmoCh12G002080 vs. TrEMBL
Match: D7SUA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03440 PE=4 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-107 Identity = 196/246 (79.67%), Postives = 221/246 (89.84%), Query Frame = 1
BLAST of CmoCh12G002080 vs. TAIR10
Match: AT3G46210.1 (AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein) HSP 1 Score: 365.9 bits (938), Expect = 2.4e-101 Identity = 178/246 (72.36%), Postives = 212/246 (86.18%), Query Frame = 1
BLAST of CmoCh12G002080 vs. TAIR10
Match: AT2G07110.1 (AT2G07110.1 BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6)) HSP 1 Score: 94.0 bits (232), Expect = 1.8e-19 Identity = 54/113 (47.79%), Postives = 71/113 (62.83%), Query Frame = 1
BLAST of CmoCh12G002080 vs. TAIR10
Match: AT3G61620.1 (AT3G61620.1 3'-5'-exoribonuclease family protein) HSP 1 Score: 78.2 bits (191), Expect = 1.0e-14 Identity = 53/180 (29.44%), Postives = 93/180 (51.67%), Query Frame = 1
BLAST of CmoCh12G002080 vs. TAIR10
Match: AT4G27490.1 (AT4G27490.1 3'-5'-exoribonuclease family protein) HSP 1 Score: 61.6 bits (148), Expect = 9.8e-10 Identity = 50/171 (29.24%), Postives = 82/171 (47.95%), Query Frame = 1
BLAST of CmoCh12G002080 vs. TAIR10
Match: AT3G03710.1 (AT3G03710.1 polyribonucleotide nucleotidyltransferase, putative) HSP 1 Score: 57.8 bits (138), Expect = 1.4e-08 Identity = 46/148 (31.08%), Postives = 76/148 (51.35%), Query Frame = 1
BLAST of CmoCh12G002080 vs. NCBI nr
Match: gi|449465139|ref|XP_004150286.1| (PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus]) HSP 1 Score: 452.6 bits (1163), Expect = 5.6e-124 Identity = 226/246 (91.87%), Postives = 236/246 (95.93%), Query Frame = 1
BLAST of CmoCh12G002080 vs. NCBI nr
Match: gi|659088512|ref|XP_008445020.1| (PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis melo]) HSP 1 Score: 450.3 bits (1157), Expect = 2.8e-123 Identity = 225/246 (91.46%), Postives = 235/246 (95.53%), Query Frame = 1
BLAST of CmoCh12G002080 vs. NCBI nr
Match: gi|645226511|ref|XP_008220073.1| (PREDICTED: exosome complex exonuclease RRP46 homolog [Prunus mume]) HSP 1 Score: 412.5 bits (1059), Expect = 6.4e-112 Identity = 205/246 (83.33%), Postives = 225/246 (91.46%), Query Frame = 1
BLAST of CmoCh12G002080 vs. NCBI nr
Match: gi|596205679|ref|XP_007223780.1| (hypothetical protein PRUPE_ppa010603mg [Prunus persica]) HSP 1 Score: 411.8 bits (1057), Expect = 1.1e-111 Identity = 204/246 (82.93%), Postives = 225/246 (91.46%), Query Frame = 1
BLAST of CmoCh12G002080 vs. NCBI nr
Match: gi|567917344|ref|XP_006450678.1| (hypothetical protein CICLE_v10009310mg [Citrus clementina]) HSP 1 Score: 401.4 bits (1030), Expect = 1.5e-108 Identity = 198/246 (80.49%), Postives = 223/246 (90.65%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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