Carg03846 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03846
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Exosome complex component rrp46
Location	Cucurbita_argyrosperma_scaffold_011 : 384807 .. 388268 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTGATACTCGCTCACTCCATTCTCTTGACCAGCTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGTCTCTCCGTCTTCCATCATCTCTTCTTAGTTCTTGTTTCATTAGTTTGTGAGTTCGTTCGATTTCGGGAACTTTTCTTATGAGTGGTTTGTTTAATCTGGATTTTACAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGTACGTTTCTTTATTTTCTTATTCACTTTGTTTTATCCATCTCTAAATCGTATGATAAAGTTCTTATCCCATGAACATTTGTAGTTCAGTAAATTTCTTACGTGTTATTGCCATTCAAAGTATGGCTATCAATGAACATACTGTCTAGTTTTTGTACTTTATTGATTCTGAAGCAGGCTATGGATGATATTCTCTGAATCTCATCAATGCATCTTCTTACATTTGATAATGTATTAGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTGAGTCCATTTTCCCCCCTTTTTGGTTCAAGATTCATGTGATATATTGCTGGTCTTTTGATGTTTAAAAATCAATATACATGAAATAGTTATTACTCATGCTTGGGACTTAGCAAATTCCCTTCATTCCAATCTTCCTTTAGTCCGAACGAATACGTTTATTAAGATTTTTTGCTTGACTACTCCGGACATGGATATTTACATAGCCAGTGCATGTTACATCATTTTATTTTGTATCTGAAACTTCTGAATAGTATGTATAAGAAATAAGTAGCTGGAACATGCTATTATGTTACTGAAACTTCTGTTGCTGGAGAAGTGTAAATATTCTAAAACCATCAAGGATGACCTCGATGCGAAATTGTTCGTTGTAGGAAATTAACACCTTTTCATTTTCCATATCATGAAAAATGTTTTGGACTGTCAGCTTTGAAATACATTATGTTTAGGGCATTTATACTAATAATGTTGCAACTAGTTTCTTATCTCAAATACATTGATATTTCCGCCTGTAATTGCAGGTTATTCATGATGATGGAGCTGTATCCCTTGTGATTTAATACCTTGTTTTTAGATTGCTGAAAATAATGTTAGGAAAATATAAGTATGTTAAGACACGTAATTCATGTCATCGTGATCCTATTCAAACTGATTTACTAACGCTATCCTTGAAAGTCGAACCTGGGTCGAAGTTCTCACAGCTACATTATAGGTGCTCTAACCAATTATGCCATATAAGAGCTGATTCACGTTAATCTTACCACGGAGAACTACTGTTTTGTCGAGGAAAAGGGAAGAACTAGGGCCTACATATCAACATGGACAGTTATTTTATCTGTTCATTGGGTAAAAAATCTAGATCTTCTGGGATCCCCTGCCAAGGGACACGGTGGAAGAGCTCCCCTAATATATCAGATTGATTTTTCTTTTAAATTTGAAGTGGCATTTGTTTAAAATGTTCCAATGTCATGCCACTGTAAAAAAAACGTTTTTTTTTTTTTTTACCTTGTATAGGTTTGATATTCTGTCAACTTATGTACCACACATGAGCATTATTTTTTCTTTATTTGTGGGAATACCTTTCTTGAAATATCTTCATGAAGAACTTCTTTGACAGAGCCCTCAAATAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGGTAATCAGAATTTATGGTTTTATTATTCATGGCTTCACTTGATAAATTAATGGTTGGCACTGACTTCTCTGCACTGCATATTGCAGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGGTTAATAAATTTACTTATTGAATTGTCAATGCTTGTCCAATTTTGCAGTTACTTTTTGTATGCATGATAAAAAGCATAGATATGGACCATATGCAAATTTGCCATGCTAGGGGTTGGCTAAGTAGTTACACATTATTGAATTTATCAAAGAAAATGAGAAAAAGTGAAAATTGTCAAATTTGATTATCAAACGAGTGATTTTTAAAGAAAAGTGAACTCGAAATGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAAGGTGCAATGTCAGGTATGTTATGCACGAAACCTATAGCTATGTTCCAGTAGTCGTAATTGAAAATGTGGATGTTTGTATTATATTTGAATTTTAGGACGTCCGTGAGGATTTTTGGGAGAGGAGTCCCACATTAGCTAATTAAGGGGTTGATCGTGGGTTTATAAATAAGAAAATACATCTTTATTGGTATGAGGCCTTTTGGAGAAACTAAAAGTAAAGTCACGAGAGCTTATGCTCAAAGTGGACAATGTCATACCATTGTGGAGAGTCATTGTTCTTAACACCAATAAGCTCGTACTTGAGTATTCACTTCTATATTGTGTTAATGATCACATATTTTTACACCAAGAGCTAAACCCATCTTTATCTGTGGCTCCAATACGTTTTGAACACGTATCTGGCTCACCCCTTCTGTAACTCACAGAAAATTTCTTGTTTCTTTTGCTTTTTTATTATTTTTTTCATCCATGATCTTCATTTTCTTGACACCATTGCACACTTCGATGGACAAAATAAACCATTTATTAGCAATGGATACGGCATATTTCTCTCATCATGTCACGTACTTTCTATAATGCTTTGTTGGGATTGAAAATGTACTTGGATCTTATTATAGCATCAAAGGTCAAAACGGGTAGAGCTAGTCTTTTCTTGGGTTACCAATGGAATCTGAAAAATGTGAGGGATCTAATTATTGTTGTTGTTTATCTGAAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGCTGATTGTATCCAAGTCCTTGCCTATGAATTGTTCTCCACGACATAATCTGGCTTGGGAAGGTATCGTCTGTTGTATGATTTATTTTGATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGAGTTCTCAGTGGATTTGATTG

mRNA sequence

TCTCTGATACTCGCTCACTCCATTCTCTTGACCAGCTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAAGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGCTGATTGTATCCAAGTCCTTGCCTATGAATTGTTCTCCACGACATAATCTGGCTTGGGAAGGTATCGTCTGTTGTATGATTTATTTTGATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGAGTTCTCAGTGGATTTGATTG

Coding sequence (CDS)

ATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAAGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGCTGA

Protein sequence

MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

Homology

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BLAST of Carg03846 vs. NCBI nr
Match: XP_022951618.1 (exosome complex exonuclease RRP46 homolog [Cucurbita moschata])

HSP 1 Score: 481.9 bits (1239), Expect = 1.3e-132
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KVG 244
           KVG
Sbjct: 241 KVG 243

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BLAST of Carg03846 vs. NCBI nr
Match: XP_023002484.1 (exosome complex exonuclease RRP46 homolog [Cucurbita maxima])

HSP 1 Score: 480.3 bits (1235), Expect = 3.8e-132
Identity = 242/243 (99.59%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGSTQV GEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS
Sbjct: 181 EGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KVG 244
           KVG
Sbjct: 241 KVG 243

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BLAST of Carg03846 vs. NCBI nr
Match: XP_023538111.1 (exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 478.4 bits (1230), Expect = 1.4e-131
Identity = 241/243 (99.18%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRA+GSASWSQGDTKILAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KVG 244
           KVG
Sbjct: 241 KVG 243

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BLAST of Carg03846 vs. NCBI nr
Match: XP_022131722.1 (exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_022131723.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_022131724.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 458.4 bits (1178), Expect = 1.5e-125
Identity = 229/241 (95.02%), Postives = 235/241 (97.51%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           +GSTQV  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 KGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 240

Query: 241 K 242
           K
Sbjct: 241 K 241

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BLAST of Carg03846 vs. NCBI nr
Match: XP_004150286.1 (PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus] >KGN62820.1 hypothetical protein Csa_2G374620 [Cucumis sativus])

HSP 1 Score: 458.0 bits (1177), Expect = 2.0e-125
Identity = 226/243 (93.00%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP +SS
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

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BLAST of Carg03846 vs. TAIR10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 371.3 bits (952), Expect = 4.5e-103
Identity = 178/243 (73.25%), Postives = 212/243 (87.24%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 239

[Close]

BLAST of Carg03846 vs. TAIR10
Match: AT2G07110.1 (BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6))

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-18
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 24  LNRAHGSASW-SQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTG----------- 83
           LN  HG+ S+    DTK+L+A YGPKA TKKNEN EKA ++     K             
Sbjct: 10  LNGIHGTLSFIFSEDTKVLSAQYGPKARTKKNENAEKACLKSYGSLKPDRLVIVNAFSFS 69

Query: 84  ------QIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAL 116
                 ++ K+E+E E ILKRTLQSIC+L + PNTTTS+++QV+HD G++
Sbjct: 70  ERGLFCRLRKVEKEYETILKRTLQSICVLRVVPNTTTSVIIQVVHDGGSV 119

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BLAST of Carg03846 vs. TAIR10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-16
Identity = 53/177 (29.94%), Postives = 93/177 (52.54%), Query Frame = 0


Query: 5   RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEV 64
           R DGR  N++R +     V+++A GSA +  G+TK++AAVYGP+    K++  +     V
Sbjct: 10  RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69

Query: 65  IWKPKTGQIGKLER----------ECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA 124
           + +    Q    +R          E  +++++T+++  +  + P++   I +QV+  DG 
Sbjct: 70  LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGG 129

Query: 125 LLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYV----ILDPTKLEEQKMKASV 168
                INA+  AL DAGIP++ LAV+ S     +GY+    +LD   +E+    A V
Sbjct: 130 TRSACINAATLALADAGIPMRDLAVSCS-----AGYLNSTPLLDLNYVEDSAGGADV 181

[Close]

BLAST of Carg03846 vs. TAIR10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 48/167 (28.74%), Postives = 79/167 (47.31%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPE-- 60
           ++  R DGR  +Q RP       ++ A GSA    G+TK++ +V+GP+   K     +  
Sbjct: 30  LDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVG 89

Query: 61  ----KASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA 120
                 S      P  GQ G   +E   +L + L+ + ++   P TT  +   V+   G+
Sbjct: 90  RLNCNVSYTNFASPTLGQ-GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 149

Query: 121 LLPCAINASCAALVDAGIPLKHLAVAIS-CCLSESGYVILDPTKLEE 161
            L   I+ +  AL DAGI +  L  A+S  C+ +S  +++DP   EE
Sbjct: 150 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKS--LMIDPVTEEE 193

[Close]

BLAST of Carg03846 vs. TAIR10
Match: AT3G03710.1 (polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-09
Identity = 44/145 (30.34%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 5   RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAV-YGPKAGTKKNENPEKAS-- 64
           R DGRT +++RP+   C +L RAHGS  +++G+T+ LA V  G K   ++ +N E +   
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506

Query: 65  ----IEVIWKPKT-GQIGKLERECEM-ILKRTLQSICILTINPNT-----TTSIVVQVIH 124
               ++  + P + G++G++       I   TL    + TI P+      T  +   VI 
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566

Query: 125 DDGALLPCAINASCAALVDAGIPLK 136
            +G+    ++   C AL DAG+P+K
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPVK 591

[Close]

BLAST of Carg03846 vs. Swiss-Prot
Match: sp|Q9LX74|EXOS5_ARATH (Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP46 PE=2 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 8.1e-102
Identity = 178/243 (73.25%), Postives = 212/243 (87.24%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 239

[Close]

BLAST of Carg03846 vs. Swiss-Prot
Match: sp|Q84T68|EXOS5_ORYSJ (Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RRP46 PE=1 SV=2)

HSP 1 Score: 300.4 bits (768), Expect = 1.8e-80
Identity = 152/238 (63.87%), Postives = 184/238 (77.31%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME  R DGR  NQLRP +C+ N L+RAHGSA W+QGDT +LAAVYGPK GT+K ENPEKA
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNTTTS+++QV+ +DG+LLPCAI
Sbjct: 61  SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ++K+  HLVFPNS  S   
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTD 239
           +   Q   E  E G+ITS+T G MS +DY  C+ERG AA++++S F+R +LQ Q P D
Sbjct: 181 KEPNQ-KEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGD 237

[Close]

BLAST of Carg03846 vs. Swiss-Prot
Match: sp|Q9NQT4|EXOS5_HUMAN (Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-33
Identity = 80/219 (36.53%), Postives = 126/219 (57.53%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ + T++P T+ ++V+QV+ D G+LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLEN 193
           ++ L   ++C L   G ++LDPT  +E++ +A +                   A + +E 
Sbjct: 148 MRALFCGVACALDSDGTLVLDPTSKQEKEARAVL-----------------TFALDSVER 207

Query: 194 GIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 233
            ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQ 229

[Close]

BLAST of Carg03846 vs. Swiss-Prot
Match: sp|Q9CRA8|EXOS5_MOUSE (Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-32
Identity = 78/219 (35.62%), Postives = 124/219 (56.62%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ +  ++P T+ ++V+QV+ D G+LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLEN 193
           ++ L   ++C L   G ++LDPT  +E++ +A +     ++                 E 
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDSA-----------------EQ 207

Query: 194 GIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 233
            ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQ 229

[Close]

BLAST of Carg03846 vs. Swiss-Prot
Match: sp|Q4JB27|RRP41_SULAC (Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.0e-15
Identity = 64/237 (27.00%), Postives = 116/237 (48.95%), Query Frame = 0


Query: 5   RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKN-ENPEKASIE 64
           R DGR  ++LRP+     VL  A GSA +  G+TK++AAVYGPK    ++   P+KAS+ 
Sbjct: 16  RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75

Query: 65  VIW--------KPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAL 124
           V +        + K     + E E   +++  L+S  +L + P T   I ++V+  D   
Sbjct: 76  VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGT 135

Query: 125 LPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSP 184
              A+ A+  AL DAGIP++ L   ++   ++ G ++LD  + E+   +A +       P
Sbjct: 136 RLVALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLNEQEDMWGEADM-------P 195

Query: 185 VSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 233
           ++V+P       G+     ++     G M+ D++    E  +   + + A  + +L+
Sbjct: 196 IAVLPS-----LGQ-----VVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALK 234

[Close]

BLAST of Carg03846 vs. TrEMBL
Match: tr|A0A0A0LLJ9|A0A0A0LLJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 1.3e-125
Identity = 226/243 (93.00%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP +SS
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]

BLAST of Carg03846 vs. TrEMBL
Match: tr|A0A1S3BB90|A0A1S3BB90_CUCME (exosome complex exonuclease RRP46 homolog OS=Cucumis melo OX=3656 GN=LOC103488187 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 6.6e-125
Identity = 225/243 (92.59%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGSTQ  GEPLE+G+ITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  DSS
Sbjct: 181 EGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]

BLAST of Carg03846 vs. TrEMBL
Match: tr|M5XGB7|M5XGB7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G449000 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 2.6e-113
Identity = 204/243 (83.95%), Postives = 225/243 (92.59%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDR DGRT NQLRPLACS NVLNRAHGSASW QGDTK+L AVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRLDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLVAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
            IE+IWKPKTGQ GKLERE EMILKRTLQSICILT+NPNTTTS+++QV++DDGALLPCAI
Sbjct: 61  CIEIIWKPKTGQSGKLEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIPLKHLAVAI CCL+ESGYV+LDP+KLEEQKMKA  +LVFPNS +S++P
Sbjct: 121 NAACAALVDAGIPLKHLAVAICCCLAESGYVVLDPSKLEEQKMKAFAYLVFPNSVLSILP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           E   QV GEP+E+GIITS+TQGAMSVDDY+HCLERGRAATAKMSAFLR+SLQPQLP DSS
Sbjct: 181 EEQLQVGGEPVEHGIITSVTQGAMSVDDYLHCLERGRAATAKMSAFLRKSLQPQLPIDSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]

BLAST of Carg03846 vs. TrEMBL
Match: tr|A0A2I4GPK6|A0A2I4GPK6_9ROSI (exosome complex exonuclease RRP46 homolog OS=Juglans regia OX=51240 GN=LOC109009696 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 8.4e-112
Identity = 200/243 (82.30%), Postives = 227/243 (93.42%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           MEIDR DGRT NQLRPLACS N+LNRAHGSASWSQGDTK+LAAVYGPKAG KKNENPEKA
Sbjct: 1   MEIDRVDGRTENQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGVKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
            +EVIWKPKTGQIGKLE+E EMI+KRTLQSICILTINPNTTTS++VQV++DDG+LLPCAI
Sbjct: 61  CVEVIWKPKTGQIGKLEKEYEMIVKRTLQSICILTINPNTTTSVIVQVLNDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAAL+DAGIPLKHLAVAI CCL++SGYVILDPTKLEEQKMKA  +LVFPN  +SV+P
Sbjct: 121 NAACAALIDAGIPLKHLAVAICCCLADSGYVILDPTKLEEQKMKAFAYLVFPNLILSVLP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGS +V GEP+E+ IITS+TQGAMSVDDY+HCL+RGRAATAKMSAFLR++LQPQ+ +DSS
Sbjct: 181 EGSLKVVGEPMEHAIITSVTQGAMSVDDYLHCLDRGRAATAKMSAFLRKTLQPQISSDSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]

BLAST of Carg03846 vs. TrEMBL
Match: tr|V4TTQ0|V4TTQ0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009310mg PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 3.5e-110
Identity = 198/243 (81.48%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DR DGR  NQLRPLACSC++L+RAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKP+TGQIGK E+E E+ILKRTLQSICILTINPNTTTS+++QV+HDDGALLPCAI
Sbjct: 61  SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CC +ESGY ILDPTKLEEQKMKA  +LVFPNS +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKAFAYLVFPNSILSVLP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGS+ V GEP+E+GIITS+T GAMSVDDY HCLERGRAA+AK+S FLRRSLQ +LP D S
Sbjct: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

The following BLAST results are available for this feature:

BLAST of Carg03846 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951618.1	1.3e-132	100.00	exosome complex exonuclease RRP46 homolog [Cucurbita moschata]	[more]
XP_023002484.1	3.8e-132	99.59	exosome complex exonuclease RRP46 homolog [Cucurbita maxima]	[more]
XP_023538111.1	1.4e-131	99.18	exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022131722.1	1.5e-125	95.02	exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_0...	[more]
XP_004150286.1	2.0e-125	93.00	PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus] >KGN62820...	[more]

BLAST of Carg03846 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46210.1	4.5e-103	73.25	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT2G07110.1	2.0e-18	46.36	BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like s...	[more]
AT3G61620.1	3.2e-16	29.94	3'-5'-exoribonuclease family protein	[more]
AT4G27490.1	1.2e-10	28.74	3'-5'-exoribonuclease family protein	[more]
AT3G03710.1	8.4e-09	30.34	polyribonucleotide nucleotidyltransferase, putative	[more]

BLAST of Carg03846 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LX74\|EXOS5_ARATH	8.1e-102	73.25	Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP...	[more]
sp\|Q84T68\|EXOS5_ORYSJ	1.8e-80	63.87	Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q9NQT4\|EXOS5_HUMAN	1.6e-33	36.53	Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1	[more]
sp\|Q9CRA8\|EXOS5_MOUSE	1.4e-32	35.62	Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1	[more]
sp\|Q4JB27\|RRP41_SULAC	2.0e-15	27.00	Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 ...	[more]

BLAST of Carg03846 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLJ9\|A0A0A0LLJ9_CUCSA	1.3e-125	93.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1	[more]
tr\|A0A1S3BB90\|A0A1S3BB90_CUCME	6.6e-125	92.59	exosome complex exonuclease RRP46 homolog OS=Cucumis melo OX=3656 GN=LOC10348818...	[more]
tr\|M5XGB7\|M5XGB7_PRUPE	2.6e-113	83.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G449000 PE=4 SV=1	[more]
tr\|A0A2I4GPK6\|A0A2I4GPK6_9ROSI	8.4e-112	82.30	exosome complex exonuclease RRP46 homolog OS=Juglans regia OX=51240 GN=LOC109009...	[more]
tr\|V4TTQ0\|V4TTQ0_9ROSI	3.5e-110	81.48	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009310mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036345	ExoRNase_PH_dom2_sf
IPR020568	Ribosomal_S5_D2-typ_fold
IPR027408	PNPase/RNase_PH_dom_sf
IPR001247	ExoRNase_PH_dom1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03846-RA	Carg03846-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 13..133 e-value: 4.6E-25 score: 88.5
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	G3DSA:3.30.230.70		coord: 2..241 e-value: 2.8E-69 score: 235.2
None	No IPR available	PANTHER	PTHR11953:SF1	EXOSOME COMPLEX COMPONENT RRP46	coord: 6..235
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 6..235
None	No IPR available	CDD	cd11372	RNase_PH_RRP46	coord: 14..228 e-value: 4.48212E-81 score: 243.241
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	coord: 12..132
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	SSF55666	Ribonuclease PH domain 2-like	coord: 133..233

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03846	Cla022215	Watermelon (97103) v1	carwmB0978
Carg03846	Csa2G374620	Cucumber (Chinese Long) v2	carcuB0987
Carg03846	MELO3C011145	Melon (DHL92) v3.5.1	carmeB0955
Carg03846	ClCG08G012270	Watermelon (Charleston Gray)	carwcgB0958
Carg03846	CSPI02G22290	Wild cucumber (PI 183967)	carcpiB1010
Carg03846	Cucsa.161340	Cucumber (Gy14) v1	carcgyB1091
Carg03846	CmaCh12G002550	Cucurbita maxima (Rimu)	carcmaB1349
Carg03846	CmoCh12G002080	Cucurbita moschata (Rifu)	carcmoB1310
Carg03846	Lsi08G010880	Bottle gourd (USVL1VR-Ls)	carlsiB898
Carg03846	Cp4.1LG07g02350	Cucurbita pepo (Zucchini)	carcpeB1368
Carg03846	CsGy2G022050	Cucumber (Gy14) v2	carcgybB0960
Carg03846	MELO3C011145.2	Melon (DHL92) v3.6.1	carmedB0961
Carg03846	CsaV3_2G030910	Cucumber (Chinese Long) v3	carcucB1015
Carg03846	Cla97C08G155450	Watermelon (97103) v2	carwmbB1034
Carg03846	Bhi04G000694	Wax gourd	carwgoB1147

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03846	Silver-seed gourd	carcarB071
Carg03846	Cucurbita maxima (Rimu)	carcmaB1356
Carg03846	Cucurbita moschata (Rifu)	carcmoB1318
Carg03846	Cucurbita pepo (Zucchini)	carcpeB1351