CmoCh12G002080 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G002080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	polyribonucleotide nucleotidyltransferase, putative
Location	Cmo_Chr12 : 1370979 .. 1375449 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGGCTTTTTAACCCAAATGTTGACTATTGTGGGCCTATTGGGCTGACAGGTGCTTCCCTTTCCCATTTTGGGCTGGGTTCGGGTGAATATTGTGGGCTTCTAAACCAAAATGTTGCCTATTGTGGGCCAATTGGGCTGACAGCTGCGTCCCCGGGCCACCTTGGGCTGGGTTCGGGTCAATTTTTTGGGCTTTTTAACCCGAATGTTGCCTATTGTGGGCCAATTGGGTTGACTGCTTCGTCCCTGGGCCACCTTCGGCTTGGTTCGATGAATGTTTTGGGCTTTTTTGCCCAAATGTTTCCTATTATAGGCCAATTGGGCTTTGGATGATGTTCGATATTTAATCTCGGATTTCGTATTTTTAATTTCTTCTATAATATTAAAGTGTGTGTATTTTCAATAACTCTTAAAAATAGTCTAATTACTGATTGTAATTAGTTTTTAACCAAATCGTTTAATTATTAATAATTATTTTGATGCAGTAAAAACATCCTTTTAAAACATTTTGATAAAGGAAAAATGAAAAGAGACTATATATATATATATATATATATATATATTGCAATAATTAAATTAATTAATATTGTAGGGACTAATTTTAACGTACTATTTTANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGTTAATTTAGCCTTTTTTTTTGCCGGTAAACTGGGAATTAGAAGAAAAAGACACTTTTGCCCTAGTCTCGTCTTCTCCTTCAGTCTCTCTCAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGTTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGTCTCTCCGTCTTCAACCATCTCTTCTTAGTTCTTGTTTCATTAGTTTGTGAGTTCGTTCGATTTCGGGAACTTTTCGTATGAGTGGTTTGTTTAATCTGGATTTTACAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGTACGTTTCTTTATTTTCTTATTCACTTTGTTTTATCCATCTCTAAATCGTATGATAAAGTTCTTATTCCATGAATATTTGTAGTTCAGTAAATTTCTTACGTGTTATTGCCATTCAAAGTACGGCTTTCAATGAACATACTGTCTAGTTTTTGTACCTTATTGATTCTGAAGCAGGCTATGGATGATATTCTCTGAATCTCATCAATGCATCCTCTTACATTTGATAATGTATTAGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTGAGTCCATTTTCCCCCCTTTTTGGTTCAAGATTCATGTGATATATTGCTGGTCTTTTGATGTTTAAAAAGTAATATACATGAAATAGGTATCTCAAAATCTTGTTGAAGGTAACCAATCTCTGAACCAGCATAAAAGATGCACAATCTTAAAGTTTAAAATTTAACATTACGTTCTATACATTCATATATGGAAAGTAATGTTATTACTCATGCTTGGGACTTAGCAAATTCCCTTCATTCCAATCTTCCTTTAGTCTGAACGAACACGTTTATTAAGATTTTTTGCTTGACTACTCCGAACATGGATATTTACATAGCCAGCGCATGTTACATCATTTTATTTTGTATCTGAAACTTCTAAATAGTATGTATAAGAAATAAGTAGCTGGAACATGCTATTATGTTACTGAAACTTCTGTTGCTGGAAAAGTGTAAATATTCTAAAACCGTCAAGAACAACCTCGATGCGAAATTGTTCGTTGTAGGAAATTAACACCTTTTCATTTTCCATATCATGAAAAATGTTTTGGACTGTCAGCTTTGAAATACATTATGTTTAGGGCATTTATACTAATAATGTTGCAACTAGTTTCTTATCTCAAATACATTGATATTTCCCCCTGTAATTGCAGGTTATTCATGATGATGGAGCTGTATCCCTTGTGATTTAATACCTCGTTTTTAGATTACTAAAAATAATGTTAGGAAAATATAAGTATGTTAAGACACGTAATTCATGTCATCGTGATCCTATTCAAACTGATTTACTAACGCTATCCTTGAAAGTCGAACATGGGTCGAAGTTCTCACAGCTACATTATAGGTGCTCTAACCAATTATGCTATATGAGAGCTGATTCACGTTAATCTTACCACGGGGAACTACTGTTTTGTCGAGGAAAAGGGAAGAACTAGGGCCTACATATCAACATGGACAGTTCTTTTATCTGGTTATTGGGTCAAAAATCTAGATATTCTGTGATCCCCTGCCTAGGGACACGGTGGAAGAGCTCCCCTAATATATCACATTGATTTTTCTTTTAAATTTGAAGTGGCATTTGTTTAAAATGTTCCAATGTCATGCCACTGTAAAAAAAATGTTTTTTTTTACCTTGTATAGGTTTGATATTCTGTCAACTTATGTACCACACATGAGAATTATTTTTTCTTTATTTGTGGGAATGCCTTTCTTGAAATATCTTCATGAAGAACTTCTTTGACAGAGCCCTCAAATAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCCTTAAAGCATCTTGCTGGTAATCAGAATTTATGGTCTTATTATTCATGGCTTCACTTGATAAATTAATGGTTGGCACTGACTTCTCTGCACTGCATATTGCAGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGGTTGGTAAATTTACTTATTGAATTGTCAATGCTTGTCCAATTTTGCAGTTACTTTTTGTATGCATGATAAAAAGCATAGATATGGACCATATGCAAATTTGCCATGCTAGGGGTTGGCTAAGTAGTTACACATTATTGAATTTATCAAAGAAAATGAGAAAAAGTGAAAATTGTCGAACTTGATTATCAAACGAGTGATTTTTAAAGAAAAGTGAACTCGAAATGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAATGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGGTATGTTGTGCACGAAACCAAGCTATGTTCCAGTAGTCGTAATTGAAGATGTGCATGTTTGTATTATGTTTGAATTTTAGGACGTCAATGAGGATTTTTGGGAGAGGAGTCCCACGTTAGCTAATTAAAGAGTTGATCATGGGTTTATAAGTAAGAAAATACATCTTCATTGGTTTGAGGCCTTTTGGAGAAACTAAAAGTAAAGTCACGAGAGCTTAAGTTCAAAGTGGACAATGTCATACCACTGTGGTGAGTCGTTGTTCTTAACACCAATAAGCTCATACTTGAGTATTCACTTCTATATTGTGTTAATGATCACGTATTTTTACACCAAGAGCTGAACTCATCTTTATCCGTGGCACTGATACATTTTGAACACGTATCTGGCTCACCCCTTTTGTAACCCACAGCAAATTTCTTGTTTCTTTTGCTTTTTTTTTCATTCACGATCTTCATTTTCTTGACACCATGGCACACTTCGATGGACAAAATAAACCATTTATTAGCAATGGATACGGCATATTTCTCTCATCATGTCATGTACTTTCTATCTAATGCCGTTTTGTGATCGAAAATGTACTTGGATCTTATTATAGCATCAAATGTCAAAACGGCTACAGTTAGTCATCTCTTGGGTTACCAATGGAATCTGAAAAATGTGAATGTTAGATAGAAAAACAAGCATGGGATCTAATTATTGTTGTTGTTTATCTGAAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGATTGGATCCAAGTCCTTGCCTATGAATTGTGCTCCACGACATAATCTGGCTTGGGAAGGTATCGTCTGTTGTATGATTTATTTTTATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGAGTTCTCAGTGGATTTGATTGATGCATTGTACGTTTACTCTTTTTTTGTTGTGCATTTGTTTGATATTCTAG

mRNA sequence

ATGTTTGGGCTTTTTAACCCAAATGTTGACTATTGTGGGCCTATTGGGCTGACAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGTTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTGTATCCCTTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCCTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAATGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGATTGGATCCAAGTCCTTGCCTATGAATTGTGCTCCACGACATAATCTGGCTTGGGAAGGTATCGTCTGTTGTATGATTTATTTTTATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGAGTTCTCAGTGGATTTGATTGATGCATTGTACGTTTACTCTTTTTTTGTTGTGCATTTGTTTGATATTCTAG

Coding sequence (CDS)

ATGTTTGGGCTTTTTAACCCAAATGTTGACTATTGTGGGCCTATTGGGCTGACAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGTTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTGTATCCCTTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCCTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAATGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGA

Homology

[Close]

BLAST of CmoCh12G002080 vs. Swiss-Prot
Match: EXOS5_ARATH (Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana GN=RRP46 PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.3e-100
Identity = 178/246 (72.36%), Postives = 212/246 (86.18%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+   LLP
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           V+PEGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q     
Sbjct: 181 VLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----Q 239

Query: 308 DSSKVG 314
            SSK G
Sbjct: 241 SSSKAG 239

[Close]

BLAST of CmoCh12G002080 vs. Swiss-Prot
Match: EXOS5_ORYSJ (Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica GN=RRP46 PE=1 SV=2)

HSP 1 Score: 294.7 bits (753), Expect = 1.2e-78
Identity = 152/241 (63.07%), Postives = 184/241 (76.35%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           ME  R DGR  NQLRP +C+ N L+RAHGSA W+QGDT +LAAVYGPK GT+K ENPEKA
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
           SIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNTTTS+++QV+ +DG+   LLP
Sbjct: 61  SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGS---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ++K+  HLVFPNS  S
Sbjct: 121 CAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
              +   Q   E  E G+ITS+T G MS +DY  C+ERG AA++++S F+R +LQ Q P 
Sbjct: 181 ASSKEPNQ-KEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPG 237

Query: 308 D 309
           D
Sbjct: 241 D 237

[Close]

BLAST of CmoCh12G002080 vs. Swiss-Prot
Match: EXOS5_HUMAN (Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-31
Identity = 80/222 (36.04%), Postives = 126/222 (56.76%), Query Frame = 1


Query: 81  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 140
           LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 141 GKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLPCAINASCAALVDA 200
           G  E+  E +++ T +++ + T++P T+ ++V+QV+ D G+   LL C +NA+C ALVDA
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGS---LLACCLNAACMALVDA 147

Query: 201 GIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEP 260
           G+P++ L   ++C L   G ++LDPT  +E++ +A +                   A + 
Sbjct: 148 GVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVL-----------------TFALDS 207

Query: 261 LENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 303
           +E  ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 VERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQ 229

[Close]

BLAST of CmoCh12G002080 vs. Swiss-Prot
Match: EXOS5_MOUSE (Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.5e-31
Identity = 78/222 (35.14%), Postives = 124/222 (55.86%), Query Frame = 1


Query: 81  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 140
           LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 141 GKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLPCAINASCAALVDA 200
           G  E+  E +++ T +++ +  ++P T+ ++V+QV+ D G+   LL C +NA+C ALVDA
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGS---LLACCLNAACMALVDA 147

Query: 201 GIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEP 260
           G+P++ L   ++C L   G ++LDPT  +E++ +A +     ++                
Sbjct: 148 GVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDSA---------------- 207

Query: 261 LENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 303
            E  ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 -EQKLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQ 229

[Close]

BLAST of CmoCh12G002080 vs. Swiss-Prot
Match: RRP41_SULAC (Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rrp41 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.6e-15
Identity = 65/240 (27.08%), Postives = 118/240 (49.17%), Query Frame = 1


Query: 72  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKN-ENPEKASIE 131
           R DGR  ++LRP+     VL  A GSA +  G+TK++AAVYGPK    ++   P+KAS+ 
Sbjct: 16  RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75

Query: 132 VIW--------KPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAV 191
           V +        + K     + E E   +++  L+S  +L + P T   I ++V+  D   
Sbjct: 76  VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGT 135

Query: 192 SLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFP 251
            L+   A+ A+  AL DAGIP++ L   ++   ++ G ++LD  + E+   +A +     
Sbjct: 136 RLV---ALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLNEQEDMWGEADM----- 195

Query: 252 NSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 303
             P++V+P       G+     ++     G M+ D++    E  +   + + A  + +L+
Sbjct: 196 --PIAVLPS-----LGQ-----VVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALK 234

[Close]

BLAST of CmoCh12G002080 vs. TrEMBL
Match: A0A0A0LLJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374620 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 3.9e-124
Identity = 226/246 (91.87%), Postives = 236/246 (95.93%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           V+PEGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP 
Sbjct: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240

Query: 308 DSSKVG 314
           +SSK G
Sbjct: 241 NSSKAG 243

[Close]

BLAST of CmoCh12G002080 vs. TrEMBL
Match: M5XGB7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010603mg PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 7.6e-112
Identity = 204/246 (82.93%), Postives = 225/246 (91.46%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           MEIDR DGRT NQLRPLACS NVLNRAHGSASW QGDTK+L AVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRLDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLVAVYGPKAGTKKNENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
            IE+IWKPKTGQ GKLERE EMILKRTLQSICILT+NPNTTTS+++QV++DDGA   LLP
Sbjct: 61  CIEIIWKPKTGQSGKLEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGA---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINA+CAALVDAGIPLKHLAVAI CCL+ESGYV+LDP+KLEEQKMKA  +LVFPNS +S
Sbjct: 121 CAINAACAALVDAGIPLKHLAVAICCCLAESGYVVLDPSKLEEQKMKAFAYLVFPNSVLS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           ++PE   QV GEP+E+GIITS+TQGAMSVDDY+HCLERGRAATAKMSAFLR+SLQPQLP 
Sbjct: 181 ILPEEQLQVGGEPVEHGIITSVTQGAMSVDDYLHCLERGRAATAKMSAFLRKSLQPQLPI 240

Query: 308 DSSKVG 314
           DSSK G
Sbjct: 241 DSSKAG 243

[Close]

BLAST of CmoCh12G002080 vs. TrEMBL
Match: V4TTQ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009310mg PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 1.0e-108
Identity = 198/246 (80.49%), Postives = 223/246 (90.65%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           ME+DR DGR  NQLRPLACSC++L+RAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
           SIEVIWKP+TGQIGK E+E E+ILKRTLQSICILTINPNTTTS+++QV+HDDGA   LLP
Sbjct: 61  SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINA+CAALVDAGIP+KHLAVAI CC +ESGY ILDPTKLEEQKMKA  +LVFPNS +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKAFAYLVFPNSILS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           V+PEGS+ V GEP+E+GIITS+T GAMSVDDY HCLERGRAA+AK+S FLRRSLQ +LP 
Sbjct: 181 VLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPG 240

Query: 308 DSSKVG 314
           D SK G
Sbjct: 241 DLSKAG 243

[Close]

BLAST of CmoCh12G002080 vs. TrEMBL
Match: A0A067GWW3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024064mg PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-107
Identity = 196/244 (80.33%), Postives = 221/244 (90.57%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           ME+DR DGR  NQLRPLACSC++L+RAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
           SIEVIWKP+TGQIGK E+E E+ILKRTLQSICILTINPNTTTS+++QV+HDDGA   LLP
Sbjct: 61  SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINA+CAALVDAGIP+KHLAVAI CC +ESGY ILDPTKLEEQKMK   +LVFPNS +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           V+PEGS+ V GEP+E+GIITS+T GAMSVDDY HCLERGRAA+AK+S FLRRSLQ +LP 
Sbjct: 181 VLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPG 240

Query: 308 DSSK 312
           D SK
Sbjct: 241 DLSK 241

[Close]

BLAST of CmoCh12G002080 vs. TrEMBL
Match: D7SUA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03440 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-107
Identity = 196/246 (79.67%), Postives = 221/246 (89.84%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           MEI RDDGRTANQLRPLACS N+LNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
            IEV+WKPKTGQIGK E+E E+ILKRTL+SIC+L INPNTTTSI++QV+ DDGA   LLP
Sbjct: 61  CIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGA---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINA+CAALVDA IPLKHLAVAI CCL+ESGYVILDPTK+EEQKMKA  +LVFPNS +S
Sbjct: 121 CAINAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAIS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           +IPEGS+ + GE +E+GIITS+T G MSVDDY+HCLERG+AA+ KMSAFLRRSLQ Q P 
Sbjct: 181 IIPEGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQSQAPN 240

Query: 308 DSSKVG 314
           DSS+ G
Sbjct: 241 DSSRAG 243

[Close]

BLAST of CmoCh12G002080 vs. TAIR10
Match: AT3G46210.1 (AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 365.9 bits (938), Expect = 2.4e-101
Identity = 178/246 (72.36%), Postives = 212/246 (86.18%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+   LLP
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           V+PEGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q     
Sbjct: 181 VLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----Q 239

Query: 308 DSSKVG 314
            SSK G
Sbjct: 241 SSSKAG 239

[Close]

BLAST of CmoCh12G002080 vs. TAIR10
Match: AT2G07110.1 (AT2G07110.1 BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6))

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-19
Identity = 54/113 (47.79%), Postives = 71/113 (62.83%), Query Frame = 1


Query: 91  LNRAHGSASWS-QGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI--------- 150
           LN  HG+ S+    DTK+L+A YGPKA TKKNEN EKA ++     K  ++         
Sbjct: 10  LNGIHGTLSFIFSEDTKVLSAQYGPKARTKKNENAEKACLKSYGSLKPDRLVIVNAFSFS 69

Query: 151 --------GKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLL 186
                    K+E+E E ILKRTLQSIC+L + PNTTTS+++QV+HD G+VS L
Sbjct: 70  ERGLFCRLRKVEKEYETILKRTLQSICVLRVVPNTTTSVIIQVVHDGGSVSFL 122

[Close]

BLAST of CmoCh12G002080 vs. TAIR10
Match: AT3G61620.1 (AT3G61620.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-14
Identity = 53/180 (29.44%), Postives = 93/180 (51.67%), Query Frame = 1


Query: 72  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEV 131
           R DGR  N++R +     V+++A GSA +  G+TK++AAVYGP+    K++  +     V
Sbjct: 10  RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69

Query: 132 IWKPKTGQIGKLER----------ECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA 191
           + +    Q    +R          E  +++++T+++  +  + P++   I +QV+  DG 
Sbjct: 70  LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGG 129

Query: 192 VSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYV----ILDPTKLEEQKMKASV 238
                   INA+  AL DAGIP++ LAV+ S     +GY+    +LD   +E+    A V
Sbjct: 130 TR---SACINAATLALADAGIPMRDLAVSCS-----AGYLNSTPLLDLNYVEDSAGGADV 181

[Close]

BLAST of CmoCh12G002080 vs. TAIR10
Match: AT4G27490.1 (AT4G27490.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 61.6 bits (148), Expect = 9.8e-10
Identity = 50/171 (29.24%), Postives = 82/171 (47.95%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPE-- 127
           ++  R DGR  +Q RP       ++ A GSA    G+TK++ +V+GP+   K     +  
Sbjct: 30  LDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVG 89

Query: 128 ----KASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA 187
                 S      P  GQ G   +E   +L + L+ + ++   P TT  +   V+   G+
Sbjct: 90  RLNCNVSYTNFASPTLGQ-GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 149

Query: 188 -VSLLLPCAINASCAALVDAGIPLKHLAVAIS-CCLSESGYVILDPTKLEE 231
            +S+L+ CA      AL DAGI +  L  A+S  C+ +S  +++DP   EE
Sbjct: 150 DLSVLISCA----SLALADAGIMMYDLITAVSVSCIGKS--LMIDPVTEEE 193

[Close]

BLAST of CmoCh12G002080 vs. TAIR10
Match: AT3G03710.1 (AT3G03710.1 polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-08
Identity = 46/148 (31.08%), Postives = 76/148 (51.35%), Query Frame = 1


Query: 72  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAV-YGPKAGTKKNENPEKAS-- 131
           R DGRT +++RP+   C +L RAHGS  +++G+T+ LA V  G K   ++ +N E +   
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506

Query: 132 ----IEVIWKPKT-GQIGKLERECEM-ILKRTLQSICILTINPNT-----TTSIVVQVIH 191
               ++  + P + G++G++       I   TL    + TI P+      T  +   VI 
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566

Query: 192 DDGAVSLLLPCAINASCAALVDAGIPLK 206
            +G+ S+   C     C AL DAG+P+K
Sbjct: 567 SNGSSSMASVC---GGCLALQDAGVPVK 591

[Close]

BLAST of CmoCh12G002080 vs. NCBI nr
Match: gi|449465139|ref|XP_004150286.1| (PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus])

HSP 1 Score: 452.6 bits (1163), Expect = 5.6e-124
Identity = 226/246 (91.87%), Postives = 236/246 (95.93%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           V+PEGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP 
Sbjct: 181 VVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM 240

Query: 308 DSSKVG 314
           +SSK G
Sbjct: 241 NSSKAG 243

[Close]

BLAST of CmoCh12G002080 vs. NCBI nr
Match: gi|659088512|ref|XP_008445020.1| (PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis melo])

HSP 1 Score: 450.3 bits (1157), Expect = 2.8e-123
Identity = 225/246 (91.46%), Postives = 235/246 (95.53%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGA   LLP
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVS
Sbjct: 121 CAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           V+PEGSTQ  GEPLE+G+ITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  
Sbjct: 181 VVPEGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSM 240

Query: 308 DSSKVG 314
           DSSK G
Sbjct: 241 DSSKAG 243

[Close]

BLAST of CmoCh12G002080 vs. NCBI nr
Match: gi|645226511|ref|XP_008220073.1| (PREDICTED: exosome complex exonuclease RRP46 homolog [Prunus mume])

HSP 1 Score: 412.5 bits (1059), Expect = 6.4e-112
Identity = 205/246 (83.33%), Postives = 225/246 (91.46%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           MEIDR DGRT NQLRPLACS NVLNRAHGSASW QGDTK+L AVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRLDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLVAVYGPKAGTKKNENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
            IE+IWKPKTGQ GKLERE EMILKRTLQSICILT+NPNTTTS+++QV++DDGA   LLP
Sbjct: 61  CIEIIWKPKTGQSGKLEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGA---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINA+CAALVDAGIPLKHLAVAI CCL+ESGYVILDP+KLEEQKMKA  +LVFPNS +S
Sbjct: 121 CAINAACAALVDAGIPLKHLAVAICCCLAESGYVILDPSKLEEQKMKAFAYLVFPNSVLS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           ++PE   QV GEP+E+GIITS+TQGAMSVDDY+HCLERGRAATAKMSAFLR+SLQPQLP 
Sbjct: 181 ILPEEQLQVGGEPMEHGIITSVTQGAMSVDDYLHCLERGRAATAKMSAFLRKSLQPQLPI 240

Query: 308 DSSKVG 314
           DSSK G
Sbjct: 241 DSSKAG 243

[Close]

BLAST of CmoCh12G002080 vs. NCBI nr
Match: gi|596205679|ref|XP_007223780.1| (hypothetical protein PRUPE_ppa010603mg [Prunus persica])

HSP 1 Score: 411.8 bits (1057), Expect = 1.1e-111
Identity = 204/246 (82.93%), Postives = 225/246 (91.46%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           MEIDR DGRT NQLRPLACS NVLNRAHGSASW QGDTK+L AVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRLDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLVAVYGPKAGTKKNENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
            IE+IWKPKTGQ GKLERE EMILKRTLQSICILT+NPNTTTS+++QV++DDGA   LLP
Sbjct: 61  CIEIIWKPKTGQSGKLEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGA---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINA+CAALVDAGIPLKHLAVAI CCL+ESGYV+LDP+KLEEQKMKA  +LVFPNS +S
Sbjct: 121 CAINAACAALVDAGIPLKHLAVAICCCLAESGYVVLDPSKLEEQKMKAFAYLVFPNSVLS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           ++PE   QV GEP+E+GIITS+TQGAMSVDDY+HCLERGRAATAKMSAFLR+SLQPQLP 
Sbjct: 181 ILPEEQLQVGGEPVEHGIITSVTQGAMSVDDYLHCLERGRAATAKMSAFLRKSLQPQLPI 240

Query: 308 DSSKVG 314
           DSSK G
Sbjct: 241 DSSKAG 243

[Close]

BLAST of CmoCh12G002080 vs. NCBI nr
Match: gi|567917344|ref|XP_006450678.1| (hypothetical protein CICLE_v10009310mg [Citrus clementina])

HSP 1 Score: 401.4 bits (1030), Expect = 1.5e-108
Identity = 198/246 (80.49%), Postives = 223/246 (90.65%), Query Frame = 1


Query: 68  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 127
           ME+DR DGR  NQLRPLACSC++L+RAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 128 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLP 187
           SIEVIWKP+TGQIGK E+E E+ILKRTLQSICILTINPNTTTS+++QV+HDDGA   LLP
Sbjct: 61  SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA---LLP 120

Query: 188 CAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVS 247
           CAINA+CAALVDAGIP+KHLAVAI CC +ESGY ILDPTKLEEQKMKA  +LVFPNS +S
Sbjct: 121 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKAFAYLVFPNSILS 180

Query: 248 VIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPT 307
           V+PEGS+ V GEP+E+GIITS+T GAMSVDDY HCLERGRAA+AK+S FLRRSLQ +LP 
Sbjct: 181 VLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPG 240

Query: 308 DSSKVG 314
           D SK G
Sbjct: 241 DLSKAG 243

The following BLAST results are available for this feature:

BLAST of CmoCh12G002080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EXOS5_ARATH	4.3e-100	72.36	Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana GN=RRP46 PE=2 ...	[more]
EXOS5_ORYSJ	1.2e-78	63.07	Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica GN=RRP...	[more]
EXOS5_HUMAN	1.1e-31	36.04	Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1	[more]
EXOS5_MOUSE	9.5e-31	35.14	Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1	[more]
RRP41_SULAC	5.6e-15	27.08	Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 ...	[more]

BLAST of CmoCh12G002080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLJ9_CUCSA	3.9e-124	91.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374620 PE=4 SV=1	[more]
M5XGB7_PRUPE	7.6e-112	82.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010603mg PE=4 SV=1	[more]
V4TTQ0_9ROSI	1.0e-108	80.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009310mg PE=4 SV=1	[more]
A0A067GWW3_CITSI	1.9e-107	80.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024064mg PE=4 SV=1	[more]
D7SUA7_VITVI	1.9e-107	79.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03440 PE=4 SV=...	[more]

BLAST of CmoCh12G002080 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46210.1	2.4e-101	72.36	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT2G07110.1	1.8e-19	47.79	BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 dom...	[more]
AT3G61620.1	1.0e-14	29.44	3'-5'-exoribonuclease family protein	[more]
AT4G27490.1	9.8e-10	29.24	3'-5'-exoribonuclease family protein	[more]
AT3G03710.1	1.4e-08	31.08	polyribonucleotide nucleotidyltransferase, putative	[more]

BLAST of CmoCh12G002080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465139\|ref\|XP_004150286.1\|	5.6e-124	91.87	PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus]	[more]
gi\|659088512\|ref\|XP_008445020.1\|	2.8e-123	91.46	PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis melo]	[more]
gi\|645226511\|ref\|XP_008220073.1\|	6.4e-112	83.33	PREDICTED: exosome complex exonuclease RRP46 homolog [Prunus mume]	[more]
gi\|596205679\|ref\|XP_007223780.1\|	1.1e-111	82.93	hypothetical protein PRUPE_ppa010603mg [Prunus persica]	[more]
gi\|567917344\|ref\|XP_006450678.1\|	1.5e-108	80.49	hypothetical protein CICLE_v10009310mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001247	ExoRNase_PH_dom1
IPR015847	ExoRNase_PH_dom2
IPR020568	Ribosomal_S5_D2-typ_fold
IPR027408	PNPase/RNase_PH_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0031125	rRNA 3'-end processing
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004536	deoxyribonuclease activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0004540	ribonuclease activity
molecular_function	GO:0003727	single-stranded RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G002080.1	CmoCh12G002080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 80..203 score: 2.6
IPR015847	Exoribonuclease, phosphorolytic domain 2	unknown	SSF55666	Ribonuclease PH domain 2-like	coord: 203..303 score: 1.43
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 79..202 score: 1.87
IPR027408	PNPase/RNase PH domain	GENE3D	G3DSA:3.30.230.70		coord: 72..234 score: 1.1
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 56..305 score: 1.4E
None	No IPR available	PANTHER	PTHR11953:SF1	EXOSOME COMPLEX COMPONENT RRP46	coord: 56..305 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G002080	Cucsa.161340	Cucumber (Gy14) v1	cgycmoB0448
CmoCh12G002080	CmaCh12G002550	Cucurbita maxima (Rimu)	cmacmoB176
CmoCh12G002080	Cla022215	Watermelon (97103) v1	cmowmB134
CmoCh12G002080	Csa2G374620	Cucumber (Chinese Long) v2	cmocuB149
CmoCh12G002080	MELO3C011145	Melon (DHL92) v3.5.1	cmomeB151
CmoCh12G002080	ClCG08G012270	Watermelon (Charleston Gray)	cmowcgB161
CmoCh12G002080	CSPI02G22290	Wild cucumber (PI 183967)	cmocpiB150
CmoCh12G002080	Lsi08G010880	Bottle gourd (USVL1VR-Ls)	cmolsiB175
CmoCh12G002080	Cp4.1LG07g02350	Cucurbita pepo (Zucchini)	cmocpeB174
CmoCh12G002080	MELO3C011145.2	Melon (DHL92) v3.6.1	cmomedB167
CmoCh12G002080	CsaV3_2G030910	Cucumber (Chinese Long) v3	cmocucB0176
CmoCh12G002080	Cla97C08G155450	Watermelon (97103) v2	cmowmbB178
CmoCh12G002080	Bhi04G000694	Wax gourd	cmowgoB0205
CmoCh12G002080	CsGy2G022050	Cucumber (Gy14) v2	cgybcmoB160
CmoCh12G002080	Carg03846	Silver-seed gourd	carcmoB1310

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G002080	Cucurbita moschata (Rifu)	cmocmoB151
CmoCh12G002080	Cucumber (Gy14) v1	cgycmoB0854
CmoCh12G002080	Cucurbita maxima (Rimu)	cmacmoB767
CmoCh12G002080	Wild cucumber (PI 183967)	cmocpiB167
CmoCh12G002080	Cucumber (Chinese Long) v2	cmocuB164
CmoCh12G002080	Melon (DHL92) v3.5.1	cmomeB159
CmoCh12G002080	Watermelon (Charleston Gray)	cmowcgB129
CmoCh12G002080	Watermelon (97103) v1	cmowmB161
CmoCh12G002080	Cucurbita pepo (Zucchini)	cmocpeB148
CmoCh12G002080	Bottle gourd (USVL1VR-Ls)	cmolsiB159
CmoCh12G002080	Cucumber (Gy14) v2	cgybcmoB274
CmoCh12G002080	Melon (DHL92) v3.6.1	cmomedB175
CmoCh12G002080	Silver-seed gourd	carcmoB0078
CmoCh12G002080	Cucumber (Chinese Long) v3	cmocucB0195
CmoCh12G002080	Watermelon (97103) v2	cmowmbB151
CmoCh12G002080	Wax gourd	cmowgoB0218