Cp4.1LG07g02350 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g02350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionExosome complex component rrp46
LocationCp4.1LG07 : 1410617 .. 1414727 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGCCTTTTTTTTTTTTGCCGGTAAACTGGGAATTAGAAGAAAAAGACACTTTTGCCCTAGTCTCGTCTTCTCCTTCAGTCTCTCTCAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGATCAGCTATTCTTTTCCTTTCTAATCGTTTGAAATCACCGGAGAAAAACGATGGAGATGGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTTATGGCTCCGCCAGTTGGTCTCAAGGTCTCTCCGTCTTCCACCATCTCTTCTTAGTTCTTGTTTCATTAGTTTGTGAGTTCGTTCGATTTCGGGAACTTTTCTTATGAGTGGTTTGTTTAATCTGGATTTTACAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGTACGTTTCTTTATTTTCTTATTCACTTTGTTTTATCCATCTCTAAATCGTATGATAAAGTTCTTATCCCATGAATATTTGTAGTTCAGTAAATTTCTTACGTGTTATTGCCATTCAAAGTATGGCTATCAATGAACATACTGTCTAGTTTTTGTACTTTATTGATTCTGAAGCATGCTATGGATGATATTCTCTGAATCTCATCAATGCATCTTCTTACATTTGATAATGTATTNCAGTAAATTTCTTACGTGTTATTGCCATTCAAAGTATGGCTTTCAATGAACATACTGTCTAGTTTTTGTACTTTATTGATTCTGAAGCAGGCTATGGATGATATTCCCTGAATCTCATCAATGCATCTTCTTACATTTGATAATGTATTAGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTGAGTCCATTTTCCCCCCCTTTTTGGTTCAAGATTCATGTGATATATTGCTGGTCTTTTGATGTTTAAAAAGTAATATACATGAAATAGGTATCTCAAAATCTTGTTGAAGGCAACCAATCTCTGAACCAGCATAAAANTCCCTCCTTTTTGGTTCAAGATTCATGTGATATATTGCTGGTCTTTTGATGTTTAAAAAGTAATATACATGAAATAGGTATCTCAAAATCTTGTTGAAGGCAACCAATCTCTGAACCAGCATAAAAGATGCACAATCTTAAAGTTTAAAATTTAACATTACTTTCTATACATTCATATATGGAAAGTAATGTTATTACTCATGCTTGGGACTTACCAAATTCCCTTCATTCCGATCTTCCTTTAGACCGAACGAACACGTTTATTAAGATTTTTTGCTTGACTACTCCTAACATGGATATTTACATAGCCAGCGCATGTTACATCATTTTATTTTATATCTGAAACTTCTAAATAGTATGTATAAGAAATAAGTAGCTGGAACATGCTATTATGTTACTGAAACTTCTGTTGCTGAAAAAGTGTAAATATTCTAAAACCATCAAGAACAACCTCCATGCGAAATTGTTCACTGTAGGAAATTAACACCTTTTCATTTTCCATATCATGAAAAATGTTTTGGACTGTCAGCTTTGAAGTACATTATGTTTGGGGAATTTATACTAATAATTTTGCAACTAGTTTCTTATCTCAAATACATTGATATTTCCCCGTCATTGCAGGTTATTCATGACGATGGAGCTGTATCCCTTGTGATTTAATACCTCGTTTTTAGATTACTAAAAATAATGTTAGGAAAATATAAGTATGTTAAGACATGTAAATCATGTCATCGTGATCCTATTCAAACTGATTTACTAACGCTATCCTTGAAAGTCGAACCTGGGTCGAAGTTCTCACGGCTACATTATAAGTGCTCTAACCAATTATGCTATATGAGAGCTGATTCACGTTAATCTTACCACGGAGAACTACTGTTTTGTCGAGGAAAAGGGAAAAACTAGGGCCTACATATCAACATGGACAGTTCTTTTATCTGTTCATTGGGTCAAAAAGCTAGATATTCTGTGATCCCCTGCCTAGGGACACGGTGGAAGAGCTCCCCTAATATATCACATTGATTTTTCTTCTAAATTTGAAGTGACATTTGTTTAAAATGTTCCAATGTCATGCCACTGTAAAAAAAAATGTTTTTTTTTTTTTTACCTTGTATAGGTTTGATATTCTGTCAACTTATGTACCACACATGAGCATTATTTTTTCTTTATTTGTGGGAATACCTTTCTTGAAATATCTTCATGAAGAACTTCTTTGACAGAGCCCTCAAATAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGGTAATCAGAATTTATGGTCTTATTATTCATGGCTTCACTTGATAAATTAACGGTTGGCACTGACTTCTCTGCACTGCATATTGCAGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGGTTGGTAAATTTACTTATTGAATTGTCAATGCTTGTCCAATTTTGCAGTTACTTTTTGTATGCATGATAAAAAGTATAGATATGGACCATATGCAAATTTGCCATGCTAGGGGTTGGCTTAGTAGTTACACATTATTGAATTTATCAAAGAAAATGATAAAAAGTGAAAATTGTCGAATTTGATTATCAAACGAGTGATTTTTAAAGAAAAATGAACTCGAAATGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGGTATGTTATGCACGAAACCTAGCTATGTTCCAGTAGTCGTAATTGAAAATGTGCATATGTTTGTATTATGTTTGAATTTTAGGATATCGGTGAGGATTGTTGGGAGAGGAGCCTCACATCAGCTAATTAAGGAATTGATCATGGGTTTTTAAGTAAGAAAATACATCTTCATGGTATGAGGCCTTTTGGAAAAACTAAAAGTAAAGTTATGAGAGCTTATGCTCAAGGTGGACAATGTCATACCATTGAGGAGAGTCGTTGTTTCTAACCCCAATAAGCTCATACTGAGTATTCTATATTGTGTTAATTATCACATATTTTTACACCAAGAGCTAAACTCATCTTTATCTGTGGCTCCAATACATTTTGAACACGTAGCTGGCTCACCCCTTTTGTAACCCACAGCAAATTTCTTGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNCGATGGACAAAATAAACCATTTATTAGCAATGGATATGGCATATTTCTCTCATCATGTCATGTACTTTCTATCTAATGCCGTTTTGTGATTGAAAATGTACTTGGATCTTATTATAGCATCAAATGTCAAAACGGGTAGAGTTAGTCTTTTCTTGGGTTACCTATTGAATCTGAAAAATGTGAATGTTAGATGGAAAAACAAGCATGGGATCTAATTATTGTTGTTGTTTATCTGAAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGATTGGATCCAAGTCCTTGCCTATGAATTGTGCTCCACGACATAATCTGGCTTGGGAAGGTATCGTCTGTTGTATGATTTATTTTTATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGAGTTCTCAGTGGATTTGATTGATGCATTGTACGTTTACTCTTATTTTGTTGTGCATTTGTTTGATATTCTAGCTTTAAAATGATGATGTCTTCAAAGTGGTCATTCAAAAGAGACTAATTTCTAGAGGAGAGAGACTC

mRNA sequence

TAGCCTTTTTTTTTTTTGCCGGTAAACTGGGAATTAGAAGAAAAAGACACTTTTGCCCTAGTCTCGTCTTCTCCTTCAGTCTCTCTCAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGATCAGCTATTCTTTTCCTTTCTAATCGTTTGAAATCACCGGAGAAAAACGATGGAGATGGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTTATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGACGATGGAGCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGATTGGATCCAAGTCCTTGCCTATGAATTGTGCTCCACGACATAATCTGGCTTGGGAAGCTTTAAAATGATGATGTCTTCAAAGTGGTCATTCAAAAGAGACTAATTTCTAGAGGAGAGAGACTC

Coding sequence (CDS)

ATGGAGATGGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTTATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGACGATGGAGCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGA

Protein sequence

MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Homology
[Close]
BLAST of Cp4.1LG07g02350 vs. Swiss-Prot
Match: EXOS5_ARATH (Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana GN=RRP46 PE=2 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 8.8e-101
Identity = 176/243 (72.43%), Postives = 212/243 (87.24%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R +GSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 239

[Close]
BLAST of Cp4.1LG07g02350 vs. Swiss-Prot
Match: EXOS5_ORYSJ (Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica GN=RRP46 PE=1 SV=2)

HSP 1 Score: 298.1 bits (762), Expect = 8.6e-80
Identity = 151/238 (63.45%), Postives = 184/238 (77.31%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME  R DGR  NQLRP +C+ N L+RA+GSA W+QGDT +LAAVYGPK GT+K ENPEKA
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNTTTS+++QV+ +DG+LLPCAI
Sbjct: 61  SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ++K+  HLVFPNS  S   
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTD 239
           +   Q   E  E G+ITS+T G MS +DY  C+ERG AA++++S F+R +LQ Q P D
Sbjct: 181 KEPNQ-KEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGD 237

[Close]
BLAST of Cp4.1LG07g02350 vs. Swiss-Prot
Match: EXOS5_HUMAN (Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.7e-33
Identity = 80/219 (36.53%), Postives = 126/219 (57.53%), Query Frame = 1 

Query: 14  LRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ + T++P T+ ++V+QV+ D G+LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLEN 193
           ++ L   ++C L   G ++LDPT  +E++ +A +                   A + +E 
Sbjct: 148 MRALFCGVACALDSDGTLVLDPTSKQEKEARAVL-----------------TFALDSVER 207

Query: 194 GIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 233
            ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQ 229

[Close]
BLAST of Cp4.1LG07g02350 vs. Swiss-Prot
Match: EXOS5_MOUSE (Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-32
Identity = 78/219 (35.62%), Postives = 124/219 (56.62%), Query Frame = 1 

Query: 14  LRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ +  ++P T+ ++V+QV+ D G+LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLEN 193
           ++ L   ++C L   G ++LDPT  +E++ +A +     ++                 E 
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDSA-----------------EQ 207

Query: 194 GIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 233
            ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQ 229

[Close]
BLAST of Cp4.1LG07g02350 vs. Swiss-Prot
Match: RRP41_SULAC (Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rrp41 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.3e-15
Identity = 64/237 (27.00%), Postives = 116/237 (48.95%), Query Frame = 1 

Query: 5   RDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKN-ENPEKASIE 64
           R DGR  ++LRP+     VL  A GSA +  G+TK++AAVYGPK    ++   P+KAS+ 
Sbjct: 16  RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75

Query: 65  VIW--------KPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAL 124
           V +        + K     + E E   +++  L+S  +L + P T   I ++V+  D   
Sbjct: 76  VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGT 135

Query: 125 LPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSP 184
              A+ A+  AL DAGIP++ L   ++   ++ G ++LD  + E+   +A +       P
Sbjct: 136 RLVALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLNEQEDMWGEADM-------P 195

Query: 185 VSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ 233
           ++V+P       G+     ++     G M+ D++    E  +   + + A  + +L+
Sbjct: 196 IAVLPS-----LGQ-----VVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALK 234

[Close]
BLAST of Cp4.1LG07g02350 vs. TrEMBL
Match: A0A0A0LLJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374620 PE=4 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 8.0e-125
Identity = 224/243 (92.18%), Postives = 236/243 (97.12%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP +SS
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]
BLAST of Cp4.1LG07g02350 vs. TrEMBL
Match: M5XGB7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010603mg PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.6e-112
Identity = 202/243 (83.13%), Postives = 225/243 (92.59%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DR DGRT NQLRPLACS NVLNRA+GSASW QGDTK+L AVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRLDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLVAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
            IE+IWKPKTGQ GKLERE EMILKRTLQSICILT+NPNTTTS+++QV++DDGALLPCAI
Sbjct: 61  CIEIIWKPKTGQSGKLEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIPLKHLAVAI CCL+ESGYV+LDP+KLEEQKMKA  +LVFPNS +S++P
Sbjct: 121 NAACAALVDAGIPLKHLAVAICCCLAESGYVVLDPSKLEEQKMKAFAYLVFPNSVLSILP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           E   QV GEP+E+GIITS+TQGAMSVDDY+HCLERGRAATAKMSAFLR+SLQPQLP DSS
Sbjct: 181 EEQLQVGGEPVEHGIITSVTQGAMSVDDYLHCLERGRAATAKMSAFLRKSLQPQLPIDSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]
BLAST of Cp4.1LG07g02350 vs. TrEMBL
Match: V4TTQ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009310mg PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 1.6e-109
Identity = 197/243 (81.07%), Postives = 223/243 (91.77%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DR DGR  NQLRPLACSC++L+RA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKP+TGQIGK E+E E+ILKRTLQSICILTINPNTTTS+++QV+HDDGALLPCAI
Sbjct: 61  SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CC +ESGY ILDPTKLEEQKMKA  +LVFPNS +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKAFAYLVFPNSILSVLP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGS+ V GEP+E+GIITS+T GAMSVDDY HCLERGRAA+AK+S FLRRSLQ +LP D S
Sbjct: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]
BLAST of Cp4.1LG07g02350 vs. TrEMBL
Match: A0A067GWW3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024064mg PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 3.0e-108
Identity = 195/241 (80.91%), Postives = 221/241 (91.70%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DR DGR  NQLRPLACSC++L+RA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKP+TGQIGK E+E E+ILKRTLQSICILTINPNTTTS+++QV+HDDGALLPCAI
Sbjct: 61  SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CC +ESGY ILDPTKLEEQKMK   +LVFPNS +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGS+ V GEP+E+GIITS+T GAMSVDDY HCLERGRAA+AK+S FLRRSLQ +LP D S
Sbjct: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240

Query: 241 K 242
           K
Sbjct: 241 K 241

[Close]
BLAST of Cp4.1LG07g02350 vs. TrEMBL
Match: D7SUA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03440 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 4.0e-108
Identity = 194/243 (79.84%), Postives = 221/243 (90.95%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+ RDDGRTANQLRPLACS N+LNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
            IEV+WKPKTGQIGK E+E E+ILKRTL+SIC+L INPNTTTSI++QV+ DDGALLPCAI
Sbjct: 61  CIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDA IPLKHLAVAI CCL+ESGYVILDPTK+EEQKMKA  +LVFPNS +S+IP
Sbjct: 121 NAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISIIP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGS+ + GE +E+GIITS+T G MSVDDY+HCLERG+AA+ KMSAFLRRSLQ Q P DSS
Sbjct: 181 EGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQSQAPNDSS 240

Query: 241 KVG 244
           + G
Sbjct: 241 RAG 243

[Close]
BLAST of Cp4.1LG07g02350 vs. TAIR10
Match: AT3G46210.1 (AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 367.9 bits (943), Expect = 5.0e-102
Identity = 176/243 (72.43%), Postives = 212/243 (87.24%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R +GSASWSQGDTK+LAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+++QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGS+   GEP+E+GIITS+T G MSVDDY  C+E GRAATA +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 239

[Close]
BLAST of Cp4.1LG07g02350 vs. TAIR10
Match: AT2G07110.1 (AT2G07110.1 BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6))

HSP 1 Score: 87.8 bits (216), Expect = 9.9e-18
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1 

Query: 24  LNRAYGSASWS-QGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI--------- 83
           LN  +G+ S+    DTK+L+A YGPKA TKKNEN EKA ++     K  ++         
Sbjct: 10  LNGIHGTLSFIFSEDTKVLSAQYGPKARTKKNENAEKACLKSYGSLKPDRLVIVNAFSFS 69

Query: 84  --------GKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAL 116
                    K+E+E E ILKRTLQSIC+L + PNTTTS+++QV+HD G++
Sbjct: 70  ERGLFCRLRKVEKEYETILKRTLQSICVLRVVPNTTTSVIIQVVHDGGSV 119

[Close]
BLAST of Cp4.1LG07g02350 vs. TAIR10
Match: AT3G61620.1 (AT3G61620.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 81.6 bits (200), Expect = 7.1e-16
Identity = 53/177 (29.94%), Postives = 93/177 (52.54%), Query Frame = 1 

Query: 5   RDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEV 64
           R DGR  N++R +     V+++A GSA +  G+TK++AAVYGP+    K++  +     V
Sbjct: 10  RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69

Query: 65  IWKPKTGQIGKLER----------ECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA 124
           + +    Q    +R          E  +++++T+++  +  + P++   I +QV+  DG 
Sbjct: 70  LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGG 129

Query: 125 LLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYV----ILDPTKLEEQKMKASV 168
                INA+  AL DAGIP++ LAV+ S     +GY+    +LD   +E+    A V
Sbjct: 130 TRSACINAATLALADAGIPMRDLAVSCS-----AGYLNSTPLLDLNYVEDSAGGADV 181

[Close]
BLAST of Cp4.1LG07g02350 vs. TAIR10
Match: AT4G27490.1 (AT4G27490.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 48/167 (28.74%), Postives = 79/167 (47.31%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPE-- 60
           ++  R DGR  +Q RP       ++ A GSA    G+TK++ +V+GP+   K     +  
Sbjct: 30  LDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVG 89

Query: 61  ----KASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGA 120
                 S      P  GQ G   +E   +L + L+ + ++   P TT  +   V+   G+
Sbjct: 90  RLNCNVSYTNFASPTLGQ-GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 149

Query: 121 LLPCAINASCAALVDAGIPLKHLAVAIS-CCLSESGYVILDPTKLEE 161
            L   I+ +  AL DAGI +  L  A+S  C+ +S  +++DP   EE
Sbjct: 150 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKS--LMIDPVTEEE 193

[Close]
BLAST of Cp4.1LG07g02350 vs. TAIR10
Match: AT3G03710.1 (AT3G03710.1 polyribonucleotide nucleotidyltransferase, putative)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-08
Identity = 43/145 (29.66%), Postives = 75/145 (51.72%), Query Frame = 1 

Query: 5   RDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAV-YGPKAGTKKNENPEKAS-- 64
           R DGRT +++RP+   C +L RA+GS  +++G+T+ LA V  G K   ++ +N E +   
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506

Query: 65  ----IEVIWKPKT-GQIGKLERECEM-ILKRTLQSICILTINPNT-----TTSIVVQVIH 124
               ++  + P + G++G++       I   TL    + TI P+      T  +   VI 
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566

Query: 125 DDGALLPCAINASCAALVDAGIPLK 136
            +G+    ++   C AL DAG+P+K
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPVK 591

[Close]
BLAST of Cp4.1LG07g02350 vs. NCBI nr
Match: gi|449465139|ref|XP_004150286.1| (PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus])

HSP 1 Score: 454.5 bits (1168), Expect = 1.1e-124
Identity = 224/243 (92.18%), Postives = 236/243 (97.12%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP +SS
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]
BLAST of Cp4.1LG07g02350 vs. NCBI nr
Match: gi|659088512|ref|XP_008445020.1| (PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis melo])

HSP 1 Score: 452.2 bits (1162), Expect = 5.7e-124
Identity = 223/243 (91.77%), Postives = 235/243 (96.71%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGSTQ  GEPLE+G+ITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  DSS
Sbjct: 181 EGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]
BLAST of Cp4.1LG07g02350 vs. NCBI nr
Match: gi|645226511|ref|XP_008220073.1| (PREDICTED: exosome complex exonuclease RRP46 homolog [Prunus mume])

HSP 1 Score: 414.5 bits (1064), Expect = 1.3e-112
Identity = 203/243 (83.54%), Postives = 225/243 (92.59%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DR DGRT NQLRPLACS NVLNRA+GSASW QGDTK+L AVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRLDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLVAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
            IE+IWKPKTGQ GKLERE EMILKRTLQSICILT+NPNTTTS+++QV++DDGALLPCAI
Sbjct: 61  CIEIIWKPKTGQSGKLEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIPLKHLAVAI CCL+ESGYVILDP+KLEEQKMKA  +LVFPNS +S++P
Sbjct: 121 NAACAALVDAGIPLKHLAVAICCCLAESGYVILDPSKLEEQKMKAFAYLVFPNSVLSILP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           E   QV GEP+E+GIITS+TQGAMSVDDY+HCLERGRAATAKMSAFLR+SLQPQLP DSS
Sbjct: 181 EEQLQVGGEPMEHGIITSVTQGAMSVDDYLHCLERGRAATAKMSAFLRKSLQPQLPIDSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]
BLAST of Cp4.1LG07g02350 vs. NCBI nr
Match: gi|596205679|ref|XP_007223780.1| (hypothetical protein PRUPE_ppa010603mg [Prunus persica])

HSP 1 Score: 413.7 bits (1062), Expect = 2.2e-112
Identity = 202/243 (83.13%), Postives = 225/243 (92.59%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DR DGRT NQLRPLACS NVLNRA+GSASW QGDTK+L AVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRLDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLVAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
            IE+IWKPKTGQ GKLERE EMILKRTLQSICILT+NPNTTTS+++QV++DDGALLPCAI
Sbjct: 61  CIEIIWKPKTGQSGKLEREYEMILKRTLQSICILTLNPNTTTSVIIQVVNDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIPLKHLAVAI CCL+ESGYV+LDP+KLEEQKMKA  +LVFPNS +S++P
Sbjct: 121 NAACAALVDAGIPLKHLAVAICCCLAESGYVVLDPSKLEEQKMKAFAYLVFPNSVLSILP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           E   QV GEP+E+GIITS+TQGAMSVDDY+HCLERGRAATAKMSAFLR+SLQPQLP DSS
Sbjct: 181 EEQLQVGGEPVEHGIITSVTQGAMSVDDYLHCLERGRAATAKMSAFLRKSLQPQLPIDSS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

[Close]
BLAST of Cp4.1LG07g02350 vs. NCBI nr
Match: gi|567917344|ref|XP_006450678.1| (hypothetical protein CICLE_v10009310mg [Citrus clementina])

HSP 1 Score: 403.7 bits (1036), Expect = 2.3e-109
Identity = 197/243 (81.07%), Postives = 223/243 (91.77%), Query Frame = 1 

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60
           ME+DR DGR  NQLRPLACSC++L+RA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120
           SIEVIWKP+TGQIGK E+E E+ILKRTLQSICILTINPNTTTS+++QV+HDDGALLPCAI
Sbjct: 61  SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAI CC +ESGY ILDPTKLEEQKMKA  +LVFPNS +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKAFAYLVFPNSILSVLP 180

Query: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240
           EGS+ V GEP+E+GIITS+T GAMSVDDY HCLERGRAA+AK+S FLRRSLQ +LP D S
Sbjct: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240

Query: 241 KVG 244
           K G
Sbjct: 241 KAG 243

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g02350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXOS5_ARATH8.8e-10172.43Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana GN=RRP46 PE=2 ... [more]
EXOS5_ORYSJ8.6e-8063.45Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica GN=RRP... [more]
EXOS5_HUMAN2.7e-3336.53Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1[more]
EXOS5_MOUSE2.3e-3235.62Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1[more]
RRP41_SULAC3.3e-1527.00Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 ... [more]
BLAST of Cp4.1LG07g02350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLJ9_CUCSA8.0e-12592.18Uncharacterized protein OS=Cucumis sativus GN=Csa_2G374620 PE=4 SV=1[more]
M5XGB7_PRUPE1.6e-11283.13Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010603mg PE=4 SV=1[more]
V4TTQ0_9ROSI1.6e-10981.07Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009310mg PE=4 SV=1[more]
A0A067GWW3_CITSI3.0e-10880.91Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024064mg PE=4 SV=1[more]
D7SUA7_VITVI4.0e-10879.84Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03440 PE=4 SV=... [more]
BLAST of Cp4.1LG07g02350 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G46210.15.0e-10272.43 Ribosomal protein S5 domain 2-like superfamily protein[more]
AT2G07110.19.9e-1845.45 BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 dom... [more]
AT3G61620.17.1e-1629.94 3'-5'-exoribonuclease family protein[more]
AT4G27490.11.2e-1028.74 3'-5'-exoribonuclease family protein[more]
AT3G03710.14.2e-0829.66 polyribonucleotide nucleotidyltransferase, putative[more]
BLAST of Cp4.1LG07g02350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465139|ref|XP_004150286.1|1.1e-12492.18PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis sativus][more]
gi|659088512|ref|XP_008445020.1|5.7e-12491.77PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis melo][more]
gi|645226511|ref|XP_008220073.1|1.3e-11283.54PREDICTED: exosome complex exonuclease RRP46 homolog [Prunus mume][more]
gi|596205679|ref|XP_007223780.1|2.2e-11283.13hypothetical protein PRUPE_ppa010603mg [Prunus persica][more]
gi|567917344|ref|XP_006450678.1|2.3e-10981.07hypothetical protein CICLE_v10009310mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
IPR020568Ribosomal_S5_D2-typ_fold
IPR015847ExoRNase_PH_dom2
IPR001247ExoRNase_PH_dom1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0071028 nuclear mRNA surveillance
biological_process GO:0034475 U4 snRNA 3'-end processing
biological_process GO:0016075 rRNA catabolic process
biological_process GO:0031125 rRNA 3'-end processing
biological_process GO:0051604 protein maturation
biological_process GO:0071051 polyadenylation-dependent snoRNA 3'-end processing
biological_process GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
biological_process GO:0006259 DNA metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0001510 RNA methylation
biological_process GO:0006626 protein targeting to mitochondrion
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0000177 cytoplasmic exosome (RNase complex)
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0005730 nucleolus
molecular_function GO:0003674 molecular_function
molecular_function GO:0004536 deoxyribonuclease activity
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0004540 ribonuclease activity
molecular_function GO:0003727 single-stranded RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g02350.1Cp4.1LG07g02350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 13..133
score: 1.7
IPR015847Exoribonuclease, phosphorolytic domain 2unknownSSF55666Ribonuclease PH domain 2-likecoord: 133..233
score: 8.16
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 12..132
score: 6.58
IPR027408PNPase/RNase PH domainGENE3DG3DSA:3.30.230.70coord: 7..164
score: 8.5
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 2..235
score: 1.9E
NoneNo IPR availablePANTHERPTHR11953:SF1EXOSOME COMPLEX COMPONENT RRP46coord: 2..235
score: 1.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g02350Cucsa.161340Cucumber (Gy14) v1cgycpeB0444
Cp4.1LG07g02350CmaCh12G002550Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g02350CmoCh12G002080Cucurbita moschata (Rifu)cmocpeB174
Cp4.1LG07g02350Cla022215Watermelon (97103) v1cpewmB782
Cp4.1LG07g02350Csa2G374620Cucumber (Chinese Long) v2cpecuB810
Cp4.1LG07g02350MELO3C011145Melon (DHL92) v3.5.1cpemeB761
Cp4.1LG07g02350ClCG08G012270Watermelon (Charleston Gray)cpewcgB748
Cp4.1LG07g02350CSPI02G22290Wild cucumber (PI 183967)cpecpiB811
Cp4.1LG07g02350Lsi08G010880Bottle gourd (USVL1VR-Ls)cpelsiB685
Cp4.1LG07g02350MELO3C011145.2Melon (DHL92) v3.6.1cpemedB897
Cp4.1LG07g02350CsaV3_2G030910Cucumber (Chinese Long) v3cpecucB1004
Cp4.1LG07g02350Bhi04G000694Wax gourdcpewgoB1043
Cp4.1LG07g02350CsGy2G022050Cucumber (Gy14) v2cgybcpeB260
Cp4.1LG07g02350Carg03846Silver-seed gourdcarcpeB1368
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g02350Wax gourdcpewgoB1059
Cp4.1LG07g02350Cucurbita pepo (Zucchini)cpecpeB138
Cp4.1LG07g02350Cucurbita pepo (Zucchini)cpecpeB511
Cp4.1LG07g02350Cucurbita maxima (Rimu)cmacpeB794
Cp4.1LG07g02350Cucurbita moschata (Rifu)cmocpeB747
Cp4.1LG07g02350Cucumber (Gy14) v2cgybcpeB440
Cp4.1LG07g02350Melon (DHL92) v3.6.1cpemedB906
Cp4.1LG07g02350Silver-seed gourdcarcpeB0087
Cp4.1LG07g02350Silver-seed gourdcarcpeB0907
Cp4.1LG07g02350Cucumber (Chinese Long) v3cpecucB1020