CmoCh02G005050 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G005050
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 2763348 .. 2765256 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATGCAAGCAACCAAGGTATCTCTGGTACTTTTTTAAAAATTATCGTGTTTCAATCCTTTTATTCATTGCATGGCTTGGTATTTCAGTTTTTTCGATTTGAATCCGTCACCTCAGACATGTTAAATATGAGTATAAGTGTTAAAAACGAAGAACTCTGATATCATGTTAAGAATGAGAAAAATAAGTGGAATCGAAAGTTTGATTTTCATAACTTTTAAATGGAATTCAAACTACAAACTAAATCCTAAAAATGAAACAAAATATTCAACCCATCAATATATCAAATATAAAATTCTGGTAAAGCTATTGGATATTGTCTATTTTAGGCTTTTCCCTTAAGACTTTAAAAGCCTTTCACACCCATCTAAAGGGTGTTTCATTCTTTTCTCCAATCAATGTGGGATATCACAATCCACCCTCCTTCGAGGTTCATCGTACTTACTGGCACACCGCCTCGTGTCTACCTCCTTCGGGGAACAACCACCTCGCTGGCACCAAATCCACCCCCCTTCGTAACCTAGCATCCTTACTGGCACACCACTTCGTGTCTACCCCCTTCGGAGAACAGCCTCCTCGCTGTCACATAGTCCGGTGTATGGCTCTGATACCATTTATAACGGCTCAAATCTATTGCTAGCAGATATTGTCTTCTTTGAACTTTTCCTTTCGGGCTTCCTCTCAAGGCTTTAAAACGCGTCTACTGGGAAAGGGTGTTTCGTTCTTCTCTTCAACCAACATCGAATATTACATTACAACTATATAACATATATTTAATATATCCGAATAACAAGTGAAATGGATTTGCAGGAAGTAGAACGTAGAAATGCACAAGGTGAGTTAATGGAGAAAAAAGTAGAGACAGTAGAGTACCGATCGTCAGCAGGGCAAGGGTTAGAAAAGAAGAACGTGCAGGTTGTCCACCAGGTTCATTCTACGCCGCAAAATTTCGCCACTAGCGGCGGCGTGCTGGCTGGAGCCGCCGCAGCGGTTGCAAACACCCTCCAGTCTGCAAAGGAAGCCATCTCTCGCAAATAAAACCCCGACCACTTGAAGAACATTTCATTTCTATTGCAAATTCTGCTATGTAATCAAATAACAACATATTATAGTTTCTTCTTCGTGGTTTGTGACTATTTTAAATTTTATAATTTATAAAAACAATTGTTTATTAATCTTTTCAAATTTATACATTGGTTCTTTTTAAAAGAACAAAAATATAATAATTTTTTATTGGCTAAAAAACGAGCTCGATTTGATGTAAATAGCAAATTGGAAGTCGAATTTAAACTAAGCAAGTATGAGTTTGCATGTAAGGTCAAGTGGGTTTGTAATGATCATCAGAGTCGCTTGGACCTTCAAGGCCTCCCGAGAAATTAAGATAGGTGAACTAGGTTCAAACTTCCTACAGAAAAATTCATGGTAACCCATTAGGAGTTGGATACGATGAGGGTTTACAAGTAAGTTGTTTACTGAGTATTTTTATAATCACCATTCTCTCCTTTCTTTTTTAGGTTTTTGCAAGTTGTTGATCAAGATAGGGAACGAGTTACGCGATCATAGTGAGAGTTGTCCCGGAGTGTCAATATTTGTTTTTATATTTGGTCATTTAGGATTTTGAGTAATGTCCAATTAATCAAAATCGAATAAACACAAAATTTCTAGTGTATAAATTACTGAATATAGTGACTAAAAGATTAAATCATCTATTTTTAAAATGATAATTAATATTTTCATCCGTCCCACAAAGCAGAATCGCGATACAAGCATTTTCAACAGTTGACATAAAGTTCTTCATTGTTGACTTAGATAGCTTAGAGAGTAAGGTCAATGCTTGTCTTCTTCCTTTTATGCCGCGTAGGAACCATTTACATTTTGTTCTTTCCTATAGGAATGGGTCAACTAA

mRNA sequence

ATGAACATGCAAGCAACCAAGGAAGTAGAACGTAGAAATGCACAAGGTGAGTTAATGGAGAAAAAAGTAGAGACAGTAGAGTACCGATCGTCAGCAGGGCAAGGGTTAGAAAAGAAGAACGTGCAGGTTGTCCACCAGGTTCATTCTACGCCGCAAAATTTCGCCACTAGCGGCGGCGTGCTGGCTGGAGCCGCCGCAGCGGTTGCAAACACCCTCCAAATCGCGATACAAGCATTTTCAACAGTTGACATAAAGTTCTTCATTGTTGACTTAGATAGCTTAGAGAGTAAGGAATGGGTCAACTAA

Coding sequence (CDS)

ATGAACATGCAAGCAACCAAGGAAGTAGAACGTAGAAATGCACAAGGTGAGTTAATGGAGAAAAAAGTAGAGACAGTAGAGTACCGATCGTCAGCAGGGCAAGGGTTAGAAAAGAAGAACGTGCAGGTTGTCCACCAGGTTCATTCTACGCCGCAAAATTTCGCCACTAGCGGCGGCGTGCTGGCTGGAGCCGCCGCAGCGGTTGCAAACACCCTCCAAATCGCGATACAAGCATTTTCAACAGTTGACATAAAGTTCTTCATTGTTGACTTAGATAGCTTAGAGAGTAAGGAATGGGTCAACTAA
Homology
[Close]
BLAST of CmoCh02G005050 vs. TrEMBL
Match: A0A0A0LNC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G427870 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.5e-19
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 7  KEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAA 66
          +EVERRNAQG++ EK+VETV+YRSS GQGLEK+NVQVVH  HS+ +NFATSGGVLAGAAA
Sbjct: 12 QEVERRNAQGQV-EKRVETVDYRSSVGQGLEKRNVQVVHLPHSSTENFATSGGVLAGAAA 71

Query: 67 AVANTLQIAIQAFS 81
          AVANTLQ A +A S
Sbjct: 72 AVANTLQSAKEAIS 84

[Close]
BLAST of CmoCh02G005050 vs. TrEMBL
Match: B9SG02_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1153490 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-12
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 1 

Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN Q  KE    NAQG++ EK++ET++YRSSAGQG E +NVQV+HQ +   +   TSGGV
Sbjct: 1  MNSQVRKETVTTNAQGDV-EKRIETIDYRSSAGQGQEMRNVQVIHQSNPNKEKSNTSGGV 60

Query: 61 LAGAAAAVANTLQIAIQAFS 81
          L+ AAA+VA+TLQ A +A S
Sbjct: 61 LSNAAASVASTLQSAKEAIS 79

[Close]
BLAST of CmoCh02G005050 vs. TrEMBL
Match: I1J9A6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G189900 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-11
Identity = 54/80 (67.50%), Postives = 59/80 (73.75%), Query Frame = 1 

Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN QA K  E  NAQ   MEKKVETV+YRSSAGQ  E++NVQV+HQ HST     TSGGV
Sbjct: 1  MNEQAKKN-EIVNAQNG-MEKKVETVDYRSSAGQRQEERNVQVIHQPHSTN----TSGGV 60

Query: 61 LAGAAAAVANTLQIAIQAFS 81
          LAGAAAAVA+TLQ A  A S
Sbjct: 61 LAGAAAAVASTLQSAKDAIS 74

[Close]
BLAST of CmoCh02G005050 vs. TrEMBL
Match: A0A151SCG0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_025744 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09
Identity = 46/71 (64.79%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 10 ERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAAAVA 69
          E  NAQ   MEKKVETV++RSSAGQG E++NVQV+HQ H       TSGGVL+GAAAAVA
Sbjct: 9  ETVNAQNH-MEKKVETVDHRSSAGQGQEERNVQVIHQPHP-----KTSGGVLSGAAAAVA 68

Query: 70 NTLQIAIQAFS 81
          +TLQ A  A S
Sbjct: 69 STLQSAKDAIS 73

[Close]
BLAST of CmoCh02G005050 vs. TrEMBL
Match: A0A061DI62_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000692 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN QA KE E  NAQGE+ E+KVETV+Y SSAG+G E K VQV+HQ   + Q   T G V
Sbjct: 1  MNTQARKESEITNAQGEV-ERKVETVDYCSSAGKGKEVKTVQVIHQYPGSNQK--TGGVV 60

Query: 61 LAGAAAAVANTLQIAIQAFS 81
          L GAAAAVA+TL+ A  A S
Sbjct: 61 LTGAAAAVASTLESAKDAIS 77

[Close]
BLAST of CmoCh02G005050 vs. TAIR10
Match: AT5G67265.1 (AT5G67265.1 unknown protein.)

HSP 1 Score: 63.9 bits (154), Expect = 6.4e-11
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1 

Query: 1  MNMQATKEVE--RRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSG 60
          MN+++TKE+E  +R   G   +  VET E RSSAG+G E++NVQVVHQ H       TSG
Sbjct: 1  MNLKSTKEMETEKRKEDGSSSKVVVETTEQRSSAGKGTEQRNVQVVHQSHP-----KTSG 60

Query: 61 GVLAGAAAAVANTLQIAIQAFS 81
           VL GAAAAV +TLQ A +  S
Sbjct: 61 DVLVGAAAAVESTLQSAKEVIS 77

[Close]
BLAST of CmoCh02G005050 vs. NCBI nr
Match: gi|700208194|gb|KGN63313.1| (hypothetical protein Csa_2G427870 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 7.8e-19
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 7  KEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAA 66
          +EVERRNAQG++ EK+VETV+YRSS GQGLEK+NVQVVH  HS+ +NFATSGGVLAGAAA
Sbjct: 12 QEVERRNAQGQV-EKRVETVDYRSSVGQGLEKRNVQVVHLPHSSTENFATSGGVLAGAAA 71

Query: 67 AVANTLQIAIQAFS 81
          AVANTLQ A +A S
Sbjct: 72 AVANTLQSAKEAIS 84

[Close]
BLAST of CmoCh02G005050 vs. NCBI nr
Match: gi|255567887|ref|XP_002524921.1| (PREDICTED: uncharacterized protein LOC8285587 isoform X1 [Ricinus communis])

HSP 1 Score: 78.2 bits (191), Expect = 9.3e-12
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 1 

Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN Q  KE    NAQG++ EK++ET++YRSSAGQG E +NVQV+HQ +   +   TSGGV
Sbjct: 1  MNSQVRKETVTTNAQGDV-EKRIETIDYRSSAGQGQEMRNVQVIHQSNPNKEKSNTSGGV 60

Query: 61 LAGAAAAVANTLQIAIQAFS 81
          L+ AAA+VA+TLQ A +A S
Sbjct: 61 LSNAAASVASTLQSAKEAIS 79

[Close]
BLAST of CmoCh02G005050 vs. NCBI nr
Match: gi|356495492|ref|XP_003516611.1| (PREDICTED: uncharacterized protein LOC100803203 [Glycine max])

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-11
Identity = 54/80 (67.50%), Postives = 59/80 (73.75%), Query Frame = 1 

Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN QA K  E  NAQ   MEKKVETV+YRSSAGQ  E++NVQV+HQ HST     TSGGV
Sbjct: 1  MNEQAKKN-EIVNAQNG-MEKKVETVDYRSSAGQRQEERNVQVIHQPHSTN----TSGGV 60

Query: 61 LAGAAAAVANTLQIAIQAFS 81
          LAGAAAAVA+TLQ A  A S
Sbjct: 61 LAGAAAAVASTLQSAKDAIS 74

[Close]
BLAST of CmoCh02G005050 vs. NCBI nr
Match: gi|764513711|ref|XP_011463745.1| (PREDICTED: uncharacterized protein LOC105351396 [Fragaria vesca subsp. vesca])

HSP 1 Score: 75.1 bits (183), Expect = 7.9e-11
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 1 

Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN QA KE++ RN +    E KV TV+ RSSAGQG E +NVQVVHQ H +P    TSGGV
Sbjct: 1  MNAQAIKELKTRNEEASAKETKVNTVDNRSSAGQGQEHRNVQVVHQSHPSPIP-NTSGGV 60

Query: 61 LAGAAAAVANTLQIAIQA 79
          L GAAAAVA+TL+ A +A
Sbjct: 61 LTGAAAAVASTLKSAKEA 77

[Close]
BLAST of CmoCh02G005050 vs. NCBI nr
Match: gi|1000954131|ref|XP_015578301.1| (PREDICTED: uncharacterized protein LOC8285587 isoform X2 [Ricinus communis])

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-10
Identity = 41/75 (54.67%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 6  TKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAA 65
          ++E    NAQG++ EK++ET++YRSSAGQG E +NVQV+HQ +   +   TSGGVL+ AA
Sbjct: 3  SQETVTTNAQGDV-EKRIETIDYRSSAGQGQEMRNVQVIHQSNPNKEKSNTSGGVLSNAA 62

Query: 66 AAVANTLQIAIQAFS 81
          A+VA+TLQ A +A S
Sbjct: 63 ASVASTLQSAKEAIS 76

The following BLAST results are available for this feature:
BLAST of CmoCh02G005050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G005050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNC0_CUCSA5.5e-1977.03Uncharacterized protein OS=Cucumis sativus GN=Csa_2G427870 PE=4 SV=1[more]
B9SG02_RICCO6.5e-1256.25Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1153490 PE=4 SV=1[more]
I1J9A6_SOYBN2.5e-1167.50Uncharacterized protein OS=Glycine max GN=GLYMA_01G189900 PE=4 SV=1[more]
A0A151SCG0_CAJCA1.0e-0964.79Uncharacterized protein OS=Cajanus cajan GN=KK1_025744 PE=4 SV=1[more]
A0A061DI62_THECC1.8e-0960.00Uncharacterized protein OS=Theobroma cacao GN=TCM_000692 PE=4 SV=1[more]
BLAST of CmoCh02G005050 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G67265.16.4e-1152.44 unknown protein.[more]
BLAST of CmoCh02G005050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208194|gb|KGN63313.1|7.8e-1977.03hypothetical protein Csa_2G427870 [Cucumis sativus][more]
gi|255567887|ref|XP_002524921.1|9.3e-1256.25PREDICTED: uncharacterized protein LOC8285587 isoform X1 [Ricinus communis][more]
gi|356495492|ref|XP_003516611.1|3.5e-1167.50PREDICTED: uncharacterized protein LOC100803203 [Glycine max][more]
gi|764513711|ref|XP_011463745.1|7.9e-1160.26PREDICTED: uncharacterized protein LOC105351396 [Fragaria vesca subsp. vesca][more]
gi|1000954131|ref|XP_015578301.1|5.1e-1054.67PREDICTED: uncharacterized protein LOC8285587 isoform X2 [Ricinus communis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G005050.1CmoCh02G005050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G005050CmaCh02G004900Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G005050Csa2G427870Cucumber (Chinese Long) v2cmocuB579
CmoCh02G005050CSPI02G27040Wild cucumber (PI 183967)cmocpiB584
CmoCh02G005050Cp4.1LG05g11830Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G005050CsaV3_2G035600Cucumber (Chinese Long) v3cmocucB0689
CmoCh02G005050Cla97C02G034720Watermelon (97103) v2cmowmbB591
CmoCh02G005050Bhi10G001175Wax gourdcmowgoB0745
CmoCh02G005050CsGy2G026460Cucumber (Gy14) v2cgybcmoB222
CmoCh02G005050Carg25157Silver-seed gourdcarcmoB0556
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G005050Cucurbita moschata (Rifu)cmocmoB404
CmoCh02G005050Cucumber (Gy14) v1cgycmoB0113
CmoCh02G005050Cucumber (Gy14) v1cgycmoB0224
CmoCh02G005050Cucurbita maxima (Rimu)cmacmoB554
CmoCh02G005050Wild cucumber (PI 183967)cmocpiB623
CmoCh02G005050Cucumber (Chinese Long) v2cmocuB617
CmoCh02G005050Melon (DHL92) v3.5.1cmomeB524
CmoCh02G005050Melon (DHL92) v3.5.1cmomeB575
CmoCh02G005050Watermelon (Charleston Gray)cmowcgB518
CmoCh02G005050Watermelon (Charleston Gray)cmowcgB528
CmoCh02G005050Watermelon (97103) v1cmowmB565
CmoCh02G005050Watermelon (97103) v1cmowmB588
CmoCh02G005050Cucurbita pepo (Zucchini)cmocpeB575
CmoCh02G005050Bottle gourd (USVL1VR-Ls)cmolsiB533
CmoCh02G005050Cucumber (Gy14) v2cgybcmoB795
CmoCh02G005050Melon (DHL92) v3.6.1cmomedB605
CmoCh02G005050Silver-seed gourdcarcmoB1278
CmoCh02G005050Cucumber (Chinese Long) v3cmocucB0737
CmoCh02G005050Wax gourdcmowgoB0749
CmoCh02G005050Wax gourdcmowgoB0759