CmaCh02G004900 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G004900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	BnaC07g16070D protein
Location	Cma_Chr02 : 2594591 .. 2595769 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCATATTACAAGGAAGGATTGAGCTAATTTCCTTGTCTTTTTGTTTGGAATAGGAAAATCAAGATGAACATGCAAGCAACCAAGGTACCTCTCCTACTTTTTAAAAATTATCGTCTTTCATTCCTTTTATTCATTGCATGGCTTGGTATTTCAGTTTTTTCGGTTTCAATCCGTCACCTTGGACATGTTAAGTATAAGTATAAGTGTTAGGGACGAGAAGCTCTAATATCATGTTAAGAATGAAAAATATAAGTGAGATCGAAAGTCTGATTTTCATTGATGTTCACAATGTCTAAATAGAATTCAAACTACAAACTAAATCCTAAAAATAACGGCCCAACCCACCACTATCAGAGATTGTCCTCATATCTCAAGTCTTTAAAAGCATATCACAATGCACCCTCCTTTAGAGTCCAGCGTTCTTATTGACACTCGTTCCTTTCTCCTATCGATGTGGGACCGCCAACAAATCCACTCTCCTTCGGGGCCCAACGTCCCTACTGGCACACCGCCTCGTATCTACCCCCTTCAGGGAATCGCCACCTCGCTGGCACCTAATCCACCCTTCTTCGTAATCCAACGTCCTTACTAGCACATCGTCTTATGTCTATCCTCTTCGAGGAACAGCCTCCTCGCTGGCACATACTCCGGTGTCTGGCTCTGATATCATTTGTAATGGCTCAAGCCCACCGCTAACCGATATTGTCGTCTTTGAGCTTTCCTTCAAGGCTATAAAACGTGTTTGCTAGGGAAGAGTTTCTACACCCTTATAAAGAGTGTTTTGTTCTCCTCCTCAACTATGAGATATTACATTACGGCTATATAAAATATATTCGAATAATAAGTGAAATGGATTTTTAGGAAGTTGAACGTAGAAATGCACAAGGTGAGTTAATGGAGAAAAAAGTAGAGACAGTAGAGTACCGATCGTCAGCAGGGCAAGGGTTGGAAAAGAAGAACGTGCAGGTTGTCCACCAGGTTCATTCTACGCCGCAAAATTTCGCCACTAGCGGCGGCGTGCTGGCTGGAGCCGCCGCAGCGGTTGCAAACACCCTCCAGTCTGCAAAGGAAGCCATCTCTCGCAAATAAAACCCCGACCACTTGAAGAACATTTCATTTCTATTGCAAATTCTGCTATGTAATCAAATAACACCATATTATAGTTTCTTCTTCGTGG

mRNA sequence

CTTCATATTACAAGGAAGGATTGAGCTAATTTCCTTGTCTTTTTGTTTGGAATAGGAAAATCAAGATGAACATGCAAGCAACCAAGGAAGTTGAACGTAGAAATGCACAAGGTGAGTTAATGGAGAAAAAAGTAGAGACAGTAGAGTACCGATCGTCAGCAGGGCAAGGGTTGGAAAAGAAGAACGTGCAGGTTGTCCACCAGGTTCATTCTACGCCGCAAAATTTCGCCACTAGCGGCGGCGTGCTGGCTGGAGCCGCCGCAGCGGTTGCAAACACCCTCCAGTCTGCAAAGGAAGCCATCTCTCGCAAATAAAACCCCGACCACTTGAAGAACATTTCATTTCTATTGCAAATTCTGCTATGTAATCAAATAACACCATATTATAGTTTCTTCTTCGTGG

Coding sequence (CDS)

ATGAACATGCAAGCAACCAAGGAAGTTGAACGTAGAAATGCACAAGGTGAGTTAATGGAGAAAAAAGTAGAGACAGTAGAGTACCGATCGTCAGCAGGGCAAGGGTTGGAAAAGAAGAACGTGCAGGTTGTCCACCAGGTTCATTCTACGCCGCAAAATTTCGCCACTAGCGGCGGCGTGCTGGCTGGAGCCGCCGCAGCGGTTGCAAACACCCTCCAGTCTGCAAAGGAAGCCATCTCTCGCAAATAA

Protein sequence

MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAAAVANTLQSAKEAISRK

Homology

[Close]

BLAST of CmaCh02G004900 vs. TrEMBL
Match: A0A0A0LNC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G427870 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-22
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 7  KEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAA 66
          +EVERRNAQG++ EK+VETV+YRSS GQGLEK+NVQVVH  HS+ +NFATSGGVLAGAAA
Sbjct: 12 QEVERRNAQGQV-EKRVETVDYRSSVGQGLEKRNVQVVHLPHSSTENFATSGGVLAGAAA 71

Query: 67 AVANTLQSAKEAISRK 83
          AVANTLQSAKEAISRK
Sbjct: 72 AVANTLQSAKEAISRK 86

[Close]

BLAST of CmaCh02G004900 vs. TrEMBL
Match: B9SG02_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1153490 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.7e-15
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 1


Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN Q  KE    NAQG++ EK++ET++YRSSAGQG E +NVQV+HQ +   +   TSGGV
Sbjct: 1  MNSQVRKETVTTNAQGDV-EKRIETIDYRSSAGQGQEMRNVQVIHQSNPNKEKSNTSGGV 60

Query: 61 LAGAAAAVANTLQSAKEAISR 82
          L+ AAA+VA+TLQSAKEAISR
Sbjct: 61 LSNAAASVASTLQSAKEAISR 80

[Close]

BLAST of CmaCh02G004900 vs. TrEMBL
Match: I1J9A6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G189900 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.3e-14
Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN QA K  E  NAQ   MEKKVETV+YRSSAGQ  E++NVQV+HQ HST     TSGGV
Sbjct: 1  MNEQAKKN-EIVNAQNG-MEKKVETVDYRSSAGQRQEERNVQVIHQPHSTN----TSGGV 60

Query: 61 LAGAAAAVANTLQSAKEAISRK 83
          LAGAAAAVA+TLQSAK+AIS+K
Sbjct: 61 LAGAAAAVASTLQSAKDAISKK 76

[Close]

BLAST of CmaCh02G004900 vs. TrEMBL
Match: A0A151SCG0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_025744 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 1


Query: 10 ERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAAAVA 69
          E  NAQ   MEKKVETV++RSSAGQG E++NVQV+HQ H       TSGGVL+GAAAAVA
Sbjct: 9  ETVNAQNH-MEKKVETVDHRSSAGQGQEERNVQVIHQPHP-----KTSGGVLSGAAAAVA 68

Query: 70 NTLQSAKEAISRK 83
          +TLQSAK+AIS+K
Sbjct: 69 STLQSAKDAISKK 75

[Close]

BLAST of CmaCh02G004900 vs. TrEMBL
Match: A0A061DI62_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000692 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN QA KE E  NAQGE+ E+KVETV+Y SSAG+G E K VQV+HQ   + Q   T G V
Sbjct: 1  MNTQARKESEITNAQGEV-ERKVETVDYCSSAGKGKEVKTVQVIHQYPGSNQK--TGGVV 60

Query: 61 LAGAAAAVANTLQSAKEAISRK 83
          L GAAAAVA+TL+SAK+AISRK
Sbjct: 61 LTGAAAAVASTLESAKDAISRK 79

[Close]

BLAST of CmaCh02G004900 vs. TAIR10
Match: AT5G67265.1 (AT5G67265.1 unknown protein.)

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-13
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 1  MNMQATKEVE--RRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSG 60
          MN+++TKE+E  +R   G   +  VET E RSSAG+G E++NVQVVHQ H       TSG
Sbjct: 1  MNLKSTKEMETEKRKEDGSSSKVVVETTEQRSSAGKGTEQRNVQVVHQSHP-----KTSG 60

Query: 61 GVLAGAAAAVANTLQSAKEAISR 82
           VL GAAAAV +TLQSAKE IS+
Sbjct: 61 DVLVGAAAAVESTLQSAKEVISK 78

[Close]

BLAST of CmaCh02G004900 vs. NCBI nr
Match: gi|700208194|gb|KGN63313.1| (hypothetical protein Csa_2G427870 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-22
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 7  KEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAA 66
          +EVERRNAQG++ EK+VETV+YRSS GQGLEK+NVQVVH  HS+ +NFATSGGVLAGAAA
Sbjct: 12 QEVERRNAQGQV-EKRVETVDYRSSVGQGLEKRNVQVVHLPHSSTENFATSGGVLAGAAA 71

Query: 67 AVANTLQSAKEAISRK 83
          AVANTLQSAKEAISRK
Sbjct: 72 AVANTLQSAKEAISRK 86

[Close]

BLAST of CmaCh02G004900 vs. NCBI nr
Match: gi|255567887|ref|XP_002524921.1| (PREDICTED: uncharacterized protein LOC8285587 isoform X1 [Ricinus communis])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 1


Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN Q  KE    NAQG++ EK++ET++YRSSAGQG E +NVQV+HQ +   +   TSGGV
Sbjct: 1  MNSQVRKETVTTNAQGDV-EKRIETIDYRSSAGQGQEMRNVQVIHQSNPNKEKSNTSGGV 60

Query: 61 LAGAAAAVANTLQSAKEAISR 82
          L+ AAA+VA+TLQSAKEAISR
Sbjct: 61 LSNAAASVASTLQSAKEAISR 80

[Close]

BLAST of CmaCh02G004900 vs. NCBI nr
Match: gi|356495492|ref|XP_003516611.1| (PREDICTED: uncharacterized protein LOC100803203 [Glycine max])

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-14
Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN QA K  E  NAQ   MEKKVETV+YRSSAGQ  E++NVQV+HQ HST     TSGGV
Sbjct: 1  MNEQAKKN-EIVNAQNG-MEKKVETVDYRSSAGQRQEERNVQVIHQPHSTN----TSGGV 60

Query: 61 LAGAAAAVANTLQSAKEAISRK 83
          LAGAAAAVA+TLQSAK+AIS+K
Sbjct: 61 LAGAAAAVASTLQSAKDAISKK 76

[Close]

BLAST of CmaCh02G004900 vs. NCBI nr
Match: gi|764513711|ref|XP_011463745.1| (PREDICTED: uncharacterized protein LOC105351396 [Fragaria vesca subsp. vesca])

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-13
Identity = 51/79 (64.56%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 60
          MN QA KE++ RN +    E KV TV+ RSSAGQG E +NVQVVHQ H +P    TSGGV
Sbjct: 1  MNAQAIKELKTRNEEASAKETKVNTVDNRSSAGQGQEHRNVQVVHQSHPSPIP-NTSGGV 60

Query: 61 LAGAAAAVANTLQSAKEAI 80
          L GAAAAVA+TL+SAKEAI
Sbjct: 61 LTGAAAAVASTLKSAKEAI 78

[Close]

BLAST of CmaCh02G004900 vs. NCBI nr
Match: gi|1000954131|ref|XP_015578301.1| (PREDICTED: uncharacterized protein LOC8285587 isoform X2 [Ricinus communis])

HSP 1 Score: 81.3 bits (199), Expect = 8.9e-13
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1


Query: 6  TKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAA 65
          ++E    NAQG++ EK++ET++YRSSAGQG E +NVQV+HQ +   +   TSGGVL+ AA
Sbjct: 3  SQETVTTNAQGDV-EKRIETIDYRSSAGQGQEMRNVQVIHQSNPNKEKSNTSGGVLSNAA 62

Query: 66 AAVANTLQSAKEAISR 82
          A+VA+TLQSAKEAISR
Sbjct: 63 ASVASTLQSAKEAISR 77

The following BLAST results are available for this feature:

BLAST of CmaCh02G004900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G004900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNC0_CUCSA	2.5e-22	82.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G427870 PE=4 SV=1	[more]
B9SG02_RICCO	8.7e-15	61.73	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1153490 PE=4 SV=1	[more]
I1J9A6_SOYBN	3.3e-14	70.73	Uncharacterized protein OS=Glycine max GN=GLYMA_01G189900 PE=4 SV=1	[more]
A0A151SCG0_CAJCA	1.1e-12	68.49	Uncharacterized protein OS=Cajanus cajan GN=KK1_025744 PE=4 SV=1	[more]
A0A061DI62_THECC	1.1e-12	64.63	Uncharacterized protein OS=Theobroma cacao GN=TCM_000692 PE=4 SV=1	[more]

BLAST of CmaCh02G004900 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67265.1	2.5e-13	56.63	unknown protein.	[more]

BLAST of CmaCh02G004900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208194\|gb\|KGN63313.1\|	3.6e-22	82.89	hypothetical protein Csa_2G427870 [Cucumis sativus]	[more]
gi\|255567887\|ref\|XP_002524921.1\|	1.2e-14	61.73	PREDICTED: uncharacterized protein LOC8285587 isoform X1 [Ricinus communis]	[more]
gi\|356495492\|ref\|XP_003516611.1\|	4.7e-14	70.73	PREDICTED: uncharacterized protein LOC100803203 [Glycine max]	[more]
gi\|764513711\|ref\|XP_011463745.1\|	4.0e-13	64.56	PREDICTED: uncharacterized protein LOC105351396 [Fragaria vesca subsp. vesca]	[more]
gi\|1000954131\|ref\|XP_015578301.1\|	8.9e-13	60.53	PREDICTED: uncharacterized protein LOC8285587 isoform X2 [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G004900.1	CmaCh02G004900.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G004900	Csa2G427870	Cucumber (Chinese Long) v2	cmacuB590
CmaCh02G004900	CSPI02G27040	Wild cucumber (PI 183967)	cmacpiB595
CmaCh02G004900	CmoCh02G005050	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G004900	Cp4.1LG05g11830	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G004900	CsaV3_2G035600	Cucumber (Chinese Long) v3	cmacucB0703
CmaCh02G004900	Cla97C02G034720	Watermelon (97103) v2	cmawmbB617
CmaCh02G004900	Bhi10G001175	Wax gourd	cmawgoB0755
CmaCh02G004900	CsGy2G026460	Cucumber (Gy14) v2	cgybcmaB231
CmaCh02G004900	Carg25157	Silver-seed gourd	carcmaB0573

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G004900	Silver-seed gourd	carcmaB1309
CmaCh02G004900	Cucumber (Chinese Long) v3	cmacucB0748
CmaCh02G004900	Wax gourd	cmawgoB0768
CmaCh02G004900	Wax gourd	cmawgoB0759
CmaCh02G004900	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh02G004900	Cucumber (Gy14) v1	cgycmaB0228
CmaCh02G004900	Cucumber (Gy14) v1	cgycmaB0118
CmaCh02G004900	Cucurbita moschata (Rifu)	cmacmoB606
CmaCh02G004900	Wild cucumber (PI 183967)	cmacpiB631
CmaCh02G004900	Cucumber (Chinese Long) v2	cmacuB626
CmaCh02G004900	Melon (DHL92) v3.5.1	cmameB534
CmaCh02G004900	Melon (DHL92) v3.5.1	cmameB584
CmaCh02G004900	Watermelon (Charleston Gray)	cmawcgB520
CmaCh02G004900	Watermelon (Charleston Gray)	cmawcgB530
CmaCh02G004900	Watermelon (97103) v1	cmawmB570
CmaCh02G004900	Watermelon (97103) v1	cmawmB595
CmaCh02G004900	Cucurbita pepo (Zucchini)	cmacpeB626
CmaCh02G004900	Bottle gourd (USVL1VR-Ls)	cmalsiB548
CmaCh02G004900	Bottle gourd (USVL1VR-Ls)	cmalsiB567
CmaCh02G004900	Cucumber (Gy14) v2	cgybcmaB816
CmaCh02G004900	Melon (DHL92) v3.6.1	cmamedB614
CmaCh02G004900	Melon (DHL92) v3.6.1	cmamedB616