Carg25157 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25157
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	BnaC07g16070D protein
Location	Cucurbita_argyrosperma_scaffold_200 : 262839 .. 263822 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATGCAAGCAATGCAAGCAACCAAGGTATCTCTCGTACTTTTTTAAAAATTATCGTGTTTCAATCCTTTTATTCATTGCATGGCTTTGGTATTTCAGTTTTTTCGGTTTGAATCCGTCACCTCATACATGTTAAATATGAGTATAAGTGTTAAAAATGAAGAGCTCTACCATCATATCAAGAATGAGAAATATAAGTGGAATCAATATTCAACCCATCAATATATCAAATATAAAATTCTAGTAAACCTACCAGATATTGTCTTTTTTAGGCTTTCACTTCACGCTTTAAGAGCCTTTCACACCCATCTAAAGGGTGTTTCATTCTCTTCTCCAACCAACGTGGGATATCACAATCCACCCTCCTTCGAGGTTCATCGTAATTACTGGCACACCGCCTCGTGTCTACCTCCTTCGGAGAACAACTACCTCGCTGGCACCAAATTTACCCCCCTTCGTAACCCAGCGTCCTTACTGACACACCGCTTCGTGTCTACCCCCTTCGGGGAACAACCTCCTCGCTGTCACATAGTCCGGTGTCTAGCTCTGATACCATTTATAACGGCCTAAGCCCCTTGCTAGTAGATATTGTCTTCTTTGGACTTTCCCTTTTCGGACTTCCTCTCAAGGCTTTAAAATGCGTCTACTAGGAAAGGGTGTTTCGTTCTTCTCTTCAACCAACATCAGATATTACATTACAACTATATAACATACATTTAATATATTCGAATAATAAGTGAAATGGATTTGCAGGAAGTAGAACGTAGAAATGCACAAGGTGAGTTGATGGAGAAAAAAGTAGAGACAGTAGAGTACCGATCGTCAGCAGGGCAAGGGTTAGAAAAGAAGAACGTGCAGGTTGTCCACCAGGTTCATTCTACGCCGCAAAATTTCGCCACTAGCGGCGGCGTGCTGGCTGGAGCCGCCGCAGCGGTTGCAAACACCCTCCAGTCTGCAAAGGAAGCCATCTCTCGCAAATAA

mRNA sequence

ATGAACATGCAAGCAATGCAAGCAACCAAGGAAGTAGAACGTAGAAATGCACAAGGTGAGTTGATGGAGAAAAAAGTAGAGACAGTAGAGTACCGATCGTCAGCAGGGCAAGGGTTAGAAAAGAAGAACGTGCAGGTTGTCCACCAGGTTCATTCTACGCCGCAAAATTTCGCCACTAGCGGCGGCGTGCTGGCTGGAGCCGCCGCAGCGGTTGCAAACACCCTCCAGTCTGCAAAGGAAGCCATCTCTCGCAAATAA

Coding sequence (CDS)

ATGAACATGCAAGCAATGCAAGCAACCAAGGAAGTAGAACGTAGAAATGCACAAGGTGAGTTGATGGAGAAAAAAGTAGAGACAGTAGAGTACCGATCGTCAGCAGGGCAAGGGTTAGAAAAGAAGAACGTGCAGGTTGTCCACCAGGTTCATTCTACGCCGCAAAATTTCGCCACTAGCGGCGGCGTGCTGGCTGGAGCCGCCGCAGCGGTTGCAAACACCCTCCAGTCTGCAAAGGAAGCCATCTCTCGCAAATAA

Protein sequence

MNMQAMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAAAVANTLQSAKEAISRK

Homology

[Close]

BLAST of Carg25157 vs. NCBI nr
Match: XP_022947813.1 (uncharacterized protein LOC111451572 [Cucurbita moschata] >XP_023007040.1 uncharacterized protein LOC111499649 [Cucurbita maxima] >XP_023532058.1 uncharacterized protein LOC111794336 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 6  MQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLA 65
          MQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLA
Sbjct: 3  MQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLA 62

Query: 66 GAAAAVANTLQSAKEAISRK 86
          GAAAAVANTLQSAKEAISRK
Sbjct: 63 GAAAAVANTLQSAKEAISRK 82

[Close]

BLAST of Carg25157 vs. NCBI nr
Match: XP_016902934.1 (PREDICTED: uncharacterized protein LOC103501120 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 6  MQATKEVERRNAQGE-LMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVL 65
          MQA KEVERRNAQG+  +EK+VETV+YRSS GQGLEK+NVQVVH  HS+ +NFATSGGVL
Sbjct: 3  MQANKEVERRNAQGQGQVEKRVETVDYRSSVGQGLEKRNVQVVHVPHSSSENFATSGGVL 62

Query: 66 AGAAAAVANTLQSAKEAISRK 86
          AGAAAAVANTLQSAKEAISRK
Sbjct: 63 AGAAAAVANTLQSAKEAISRK 83

[Close]

BLAST of Carg25157 vs. NCBI nr
Match: KGN63313.1 (hypothetical protein Csa_2G427870 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 9.5e-22
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 10 KEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAA 69
          +EVERRNAQG+ +EK+VETV+YRSS GQGLEK+NVQVVH  HS+ +NFATSGGVLAGAAA
Sbjct: 12 QEVERRNAQGQ-VEKRVETVDYRSSVGQGLEKRNVQVVHLPHSSTENFATSGGVLAGAAA 71

Query: 70 AVANTLQSAKEAISRK 86
          AVANTLQSAKEAISRK
Sbjct: 72 AVANTLQSAKEAISRK 86

[Close]

BLAST of Carg25157 vs. NCBI nr
Match: XP_022149538.1 (uncharacterized protein LOC111017948 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 6  MQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKK-NVQVVHQVH--STPQNFATSGG 65
          MQA KE E  N QG+L EK+V TVEY +SAGQG E++ NVQ+VH VH  S P  +ATSGG
Sbjct: 1  MQAKKEEEEGNGQGQL-EKRVNTVEYWTSAGQGQEQRNNVQIVHHVHPQSHPSPYATSGG 60

Query: 66 VLAGAAAAVANTLQSAKEAISRK 86
          VLAGAAAA+ANTLQSAK+AISRK
Sbjct: 61 VLAGAAAAIANTLQSAKDAISRK 82

[Close]

BLAST of Carg25157 vs. NCBI nr
Match: XP_021654678.1 (uncharacterized protein LOC110645744 [Hevea brasiliensis])

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 50/78 (64.10%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 7  QATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAG 66
          QA +EV  +NAQG+ +EKKVET++YRSSAGQG E +NVQVVHQ H   +N  TSGGVL+ 
Sbjct: 4  QARREVVTKNAQGD-VEKKVETIDYRSSAGQGAEIRNVQVVHQSH-PKENLNTSGGVLSN 63

Query: 67 AAAAVANTLQSAKEAISR 85
          AAA+VA+TL+SAK+AI++
Sbjct: 64 AAASVASTLESAKDAITK 79

[Close]

BLAST of Carg25157 vs. TAIR10
Match: AT5G67265.1 (unknown protein.)

HSP 1 Score: 67.4 bits (163), Expect = 4.9e-12
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 6  MQATKEV--ERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGV 65
          +++TKE+  E+R   G   +  VET E RSSAG+G E++NVQVVHQ H       TSG V
Sbjct: 3  LKSTKEMETEKRKEDGSSSKVVVETTEQRSSAGKGTEQRNVQVVHQSHP-----KTSGDV 62

Query: 66 LAGAAAAVANTLQSAKEAISR 85
          L GAAAAV +TLQSAKE IS+
Sbjct: 63 LVGAAAAVESTLQSAKEVISK 78

[Close]

BLAST of Carg25157 vs. TrEMBL
Match: tr|A0A1S4E3Y2|A0A1S4E3Y2_CUCME (uncharacterized protein LOC103501120 OS=Cucumis melo OX=3656 GN=LOC103501120 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 6  MQATKEVERRNAQGE-LMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVL 65
          MQA KEVERRNAQG+  +EK+VETV+YRSS GQGLEK+NVQVVH  HS+ +NFATSGGVL
Sbjct: 3  MQANKEVERRNAQGQGQVEKRVETVDYRSSVGQGLEKRNVQVVHVPHSSSENFATSGGVL 62

Query: 66 AGAAAAVANTLQSAKEAISRK 86
          AGAAAAVANTLQSAKEAISRK
Sbjct: 63 AGAAAAVANTLQSAKEAISRK 83

[Close]

BLAST of Carg25157 vs. TrEMBL
Match: tr|A0A0A0LNC0|A0A0A0LNC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G427870 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.3e-22
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 10 KEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAA 69
          +EVERRNAQG+ +EK+VETV+YRSS GQGLEK+NVQVVH  HS+ +NFATSGGVLAGAAA
Sbjct: 12 QEVERRNAQGQ-VEKRVETVDYRSSVGQGLEKRNVQVVHLPHSSTENFATSGGVLAGAAA 71

Query: 70 AVANTLQSAKEAISRK 86
          AVANTLQSAKEAISRK
Sbjct: 72 AVANTLQSAKEAISRK 86

[Close]

BLAST of Carg25157 vs. TrEMBL
Match: tr|I1J9A6|I1J9A6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100803203 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-13
Identity = 58/85 (68.24%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 1  MNMQAMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATS 60
          MN QA    K+ E  NAQ   MEKKVETV+YRSSAGQ  E++NVQV+HQ HST     TS
Sbjct: 1  MNEQA----KKNEIVNAQNG-MEKKVETVDYRSSAGQRQEERNVQVIHQPHST----NTS 60

Query: 61 GGVLAGAAAAVANTLQSAKEAISRK 86
          GGVLAGAAAAVA+TLQSAK+AIS+K
Sbjct: 61 GGVLAGAAAAVASTLQSAKDAISKK 76

[Close]

BLAST of Carg25157 vs. TrEMBL
Match: tr|B9SG02|B9SG02_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1153490 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-13
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 7  QATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAG 66
          Q  KE    NAQG+ +EK++ET++YRSSAGQG E +NVQV+HQ +   +   TSGGVL+ 
Sbjct: 4  QVRKETVTTNAQGD-VEKRIETIDYRSSAGQGQEMRNVQVIHQSNPNKEKSNTSGGVLSN 63

Query: 67 AAAAVANTLQSAKEAISR 85
          AAA+VA+TLQSAKEAISR
Sbjct: 64 AAASVASTLQSAKEAISR 80

[Close]

BLAST of Carg25157 vs. TrEMBL
Match: tr|A0A151SCG0|A0A151SCG0_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_025744 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 13 ERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVHSTPQNFATSGGVLAGAAAAVA 72
          E  NAQ   MEKKVETV++RSSAGQG E++NVQV+HQ H       TSGGVL+GAAAAVA
Sbjct: 9  ETVNAQNH-MEKKVETVDHRSSAGQGQEERNVQVIHQPHP-----KTSGGVLSGAAAAVA 68

Query: 73 NTLQSAKEAISRK 86
          +TLQSAK+AIS+K
Sbjct: 69 STLQSAKDAISKK 75

The following BLAST results are available for this feature:

BLAST of Carg25157 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947813.1	1.0e-31	100.00	uncharacterized protein LOC111451572 [Cucurbita moschata] >XP_023007040.1 unchar...	[more]
XP_016902934.1	1.7e-23	82.72	PREDICTED: uncharacterized protein LOC103501120 [Cucumis melo]	[more]
KGN63313.1	9.5e-22	82.89	hypothetical protein Csa_2G427870 [Cucumis sativus]	[more]
XP_022149538.1	1.0e-15	69.88	uncharacterized protein LOC111017948 [Momordica charantia]	[more]
XP_021654678.1	1.6e-13	64.10	uncharacterized protein LOC110645744 [Hevea brasiliensis]	[more]

BLAST of Carg25157 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67265.1	4.9e-12	55.56	unknown protein.	[more]

BLAST of Carg25157 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25157 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E3Y2\|A0A1S4E3Y2_CUCME	1.1e-23	82.72	uncharacterized protein LOC103501120 OS=Cucumis melo OX=3656 GN=LOC103501120 PE=...	[more]
tr\|A0A0A0LNC0\|A0A0A0LNC0_CUCSA	6.3e-22	82.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G427870 PE=4 SV=1	[more]
tr\|I1J9A6\|I1J9A6_SOYBN	2.4e-13	68.24	Uncharacterized protein OS=Glycine max OX=3847 GN=100803203 PE=4 SV=1	[more]
tr\|B9SG02\|B9SG02_RICCO	2.4e-13	61.54	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1153490 PE=4 SV=1	[more]
tr\|A0A151SCG0\|A0A151SCG0_CAJCA	2.0e-12	68.49	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_025744 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25157-RA	Carg25157-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25157	Csa2G427870	Cucumber (Chinese Long) v2	carcuB0442
Carg25157	CSPI02G27040	Wild cucumber (PI 183967)	carcpiB0447
Carg25157	CmaCh02G004900	Cucurbita maxima (Rimu)	carcmaB0573
Carg25157	CmoCh02G005050	Cucurbita moschata (Rifu)	carcmoB0556
Carg25157	Cp4.1LG05g11830	Cucurbita pepo (Zucchini)	carcpeB0577
Carg25157	CsGy2G026460	Cucumber (Gy14) v2	carcgybB0420
Carg25157	CsaV3_2G035600	Cucumber (Chinese Long) v3	carcucB0444
Carg25157	Cla97C02G034720	Watermelon (97103) v2	carwmbB0436
Carg25157	Bhi10G001175	Wax gourd	carwgoB0497

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25157	Cucumber (Gy14) v1	carcgyB0476
Carg25157	Cucurbita maxima (Rimu)	carcmaB0572
Carg25157	Cucurbita moschata (Rifu)	carcmoB0555
Carg25157	Cucurbita pepo (Zucchini)	carcpeB0576
Carg25157	Bottle gourd (USVL1VR-Ls)	carlsiB374
Carg25157	Melon (DHL92) v3.5.1	carmeB0416
Carg25157	Melon (DHL92) v3.6.1	carmedB0420
Carg25157	Watermelon (Charleston Gray)	carwcgB0406
Carg25157	Watermelon (97103) v1	carwmB0410