CmoCh01G009860 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G009860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSmall nuclear ribonucleoprotein E
LocationCmo_Chr01 : 6522914 .. 6531751 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACTCTTCTATTTCAGCTCATTGAAATTTCTTGAATCCCAACGAATTTACTCTAATTAATTGTTCTTGACCTTTTTTTTTCTTCCTTATGACCCTTGAAGCTTATGAAAGCTAACTTAGTTGTTTTCTCGAGAGATTCGTTAATATTTTGGTCAGAGTTAAACTTTTGGTCGATCCACCTGTCACAATATCTCACACTTAAAGGTGTGGATAAATATGAAACTATTATGGTAATACAAGGACAACTGAAATAATGAACCGTTCTACTCAAATAAACTATTCCTTACTGACTTAACAACTTTGACTAATTTTGTCTAAAATAAGTGGCACTAATTTTGACACCACAATGGTCGACTGAATCAATCTTGGGCAACTTGTTGAGGGCAAACCAAATCGATCTTTGGCCTACAACTTAACGGCTCAGCCTTTCAAGGTTTGACCGAGCCCTTAGCACCGCACTTCATGAATTAGGGTGAGTTTGATCTTGTCTCTCCTTGGGTCATAGGCTAACCCATCTCAATAGTCTCAATAATGTGGGCGGAGACAGAAATATAATCTTTTTCTCATCCTCTTTTAACTGAGAATGAGAAATCTCTTTTCGTTGGTTTCCGTGTTTAAAAAGGATTTTTTTTTTCTTTTTTGAAAATGAGTATTTTTAAAAAATAGTTTAAAGACGAGGTAATTGAACGGGTATTTATATTATTATTATTATTATTTTTTTTTATTTTACGGAATATGTACCGTAAACCAAAACCTCTTTTCACCCTTTTCCTTCGTTGGAGTGAAGTGGCTGCTTAGCTTAAACCGGAACCAAACTCCCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTAGGCCTTCGATTTCCTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCCCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCGTACCTTCTCATCTCAATTCCTTCTTCTTCATTTCATTCTCCATTTTCTATCATTTTTCTGCGTCTTTCACTTACACATTTTATTTCTCTTTCAATTGATGTTGGTGCGCCTTCAGAACTTGATTTTCAGGTTCCTTCAAAGTGTAAGTTCCTTTTCAGCTTCATTTTGTTTATAGTTTTTCATAGTGAAATTGATGTTTTCTATCTCTGATTTTATTCACGTAATCTTCACGCTCGAAATTTATACAGAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGTAAGTGGTCCTTTTCTTTGAGAAACTATCGTGCTAATTAATAGTTTTTGTTTTTAAAATGTACGTTTAAATGCTATAAAAGCTTACTAGGGTTTAAGTTTCAAATGTTGAATCGTCATCTTTTTTCTTTTCCTAAAGATTTTTCTCCAACCAAGGTAAACTAAGAACGTTGCAATCTAGATAAAATGGAAGTTAGATTAGTGAAATTGGTTATCATTTGATATATAAAACATTCTGTGGAGGTATTGAAATCATCAAGCATACTAAGTTAGCTTGAATTAATCAGTCATGCCACAGTAACAACTCTCATTGTTTGATGGGGTGAAATGTTGGGAGGTATAAAGGGTTGTGTATCTTCAAATTTACTCTCAAGAACAATAGAAACTAGTAAAAGTAGTTGAGAAGAGGAGAAATGACTCTAAAATTTGGATAGGTTCGCTTGTTTTCTGTTGATTTAATATTTCACTGTATAGAAAAGACAATTGTTTTTTTTTCCTTTTTGTAAAGGAAAAGAGACAGAAAAGCAAAAATATATGAAGATACACATAAAATTGTGCTTCCCTTGGTTGTTTTGATTACACAATTCAAAATCAGCTTTCATTGAAAGAAAAAAATGCAAAAGAAAATCAGTTTATATTATTTTCTTCTGTATTAGCGTAGTTGTACGTCTATGTTGGCCCCTGGAGGTTAGTAGTCGTAGTGCGAAAAATAAGTCTTTCTTCATTAGATTAGTTAAGGTTTTCTGGGTTTCGTAAAGTTAAGTTAGAAGAAGAAAGTTCTTCCTTCTTACGTAAGATTGGTATGGTAAGTTGTTTGGGTTGGAGAAAGAAAGCTTTGTTGGAGCTTCTGCAATGTCTGATGGCCCAGAATTTCCTTTGGAGATAGTATGCTTTGAAATTCCTTCGTAGGAAGAACTGGGATGTCATTTGACATATTTGGAAGAGCAAGAAAGTTACTGGAGAAATATATGTTTGAGCTAGGACTATGGAGGTTAAAATTTTACCAATTCATTAGGTTGACATTCGTGGCCTACTAAATTTAATCCTTCAATTAAAGATTATTAAGGTCTTAAGATCTCTTTAACTGCAACATGTCTTCGGTGTTCCTGTAAGAAGAGTCTAGGTAAAAAAGAAAATGGCACTAGAAGAAGACTAGACAGAAATCTTTGGCTTCATTTGTCTTCGGTATCGTCGCGACTTTCGAAGCCGCCATCTTGGTGTCACCTTCGCTGCCTCCCTACACAGTCGCGACTTTTGGAAGGTGAAGAGTCGCGACTTTTAGAAGGTGAAGAGTCGTGACTTCTAGCATCGTGCCAAGGTGGGGAAGACGAAGAGTCGCGAGCAACATTCTGAAAGACGAAGAGTTGCGACTTCCGGCGCCACGAATCGCTACGACTACCGCTCCTCTGACGACAACCACGATCATAAAAGACCACAATGAGGCCGCCCCTCCGATCCCACACTTGCACAGCCTGCGAGCCACTCCTCCGATTGAAGAAGACCATGACGACAGTTGCTCCTCTGACTTTCGGCACCAGTAAACGTGTACAACTGCTCTTCCTCCTCCGACGCCTGTATAGCCCACGATGACAGTCGCCCCCTCGACAGCCACCGATAAAAAGCCTAGAAATCCATCTCGGAAGATTTCCTCCTTGGTTTTTCAAAGAGTAGTTGGGTTACTGTTTTTGCTTGATTGTACCTCCGACAACAAGGATTTTGCATCAACCAGCAATGATTTCATTTTGCATCAACCAGCAATGATTTCATAACCAACAAAGATTTTGAATCCATTTGACAGTACCTCTGACCCGTGGCACCACACCAAATACTCCAGAGGATTTTGAATCCATTTGGACAGTAACCTTTGACCCATGGCACTGCACCAAATACTTCAGAGATTCAAAACGAAAACTTATGCAATTGAGTTAGACGGGAACAAGAATCAAGCTATTAGAAATAACAGAGGCAACTTTTTTCCTATCATTGAAATGAGGCTTTTTCCAATGGCTGAAAACATCCACTACCATTGGCTCCACTAAACCAAAAATTCAAGGAGAAACGTTTTTCGGAACAGATCATTGGATAGAAAAACTCACAAACAAGAAGGGTATTATTGCTGAAATCTCATTGCACCATGGAAATGGAGGTATAAACAAATTGTTTGTCCTAGTGGGCGAAGAACGGATAGGTTGGATAGCTTTTTTCGATCTTATTGGAAACTATTTCTTGCTGTCCACTAAAATACTATACCATCAACTAAACTCAAGATCCTAGAGTAGAAGACACCACAATCATAACCATCGACCTACACAACCCTTGCATGTTACTAAAAAGTTGTCACAAATGCTAGAAAATAGAAAGAGAAACATACCTTCCAATTCTAAATAAAAAAGCAAAGACGATCAACAACGTTTTTTCCTTCCCCCCATTAATACTGTATGGGCTTCGAATTCTAAATAAAAAAGCAAAGACGATCAACAATGAGTTTTCCCTCTCTCCCATTAATACTGTATGGGCTACGATAGTGATTGTCATTTAGAAACATTTTTACGGTGACTGATTTACGATAAACAGGAGCATCTAATCTATGCTCAATGACTCCTGCCAACTAAACCCCTACAAAGTTGACAAGGCAATTCTCCGTTGCATGTCAAAGGAGCAAGTATCATTAGTTTGAGTTTGTAATAAAAAAGGTCAGCAAAAAGTTGAAAACTATGTTGTGAAAGTAGAACCATGATCTGATGAAAAGCACTTGTTTACAACAACCCATGGAAAGTAGAATGAGATAATGATCAGATAGGTTTATTCAGTCTTTGAACACCAAAGTTACTGAATTTTCCAAAGAGGCCTTTTGTGGCAAGAAATCTATCGATGAGTGTCAAGGTGGGTGGAGACCTGTTGTTTGACCATGTATAGAGTCCATTATTGAGGGGAAGATCAATGAGTTCGATTTCTCTTATGAAATTGTTGAAGTGTCTCATGCTTTTGGTGGCTTTTCCACTGGATTTTTCATGTGCCCATCGAGAGGTATTGAAATCTCCCGCCAAACGCCAATTCTCTATACATAAGCATGATAGGTCCTGTAATTCCTGCCAGATAGATGTCTTTCTTGAAACCTACCGGGGCCATAAATTCCTGTATAATTATTAGCCAGTGTAATATGGTTAGGGTGTATAAGCCTTTAGTGACTTCTGAAATGGTCAGAGTTGGGTCATTCCTCATGATTAAGATCAAGCCAAAGATGACCAACCAATATGTTTGGCACTCCATAGAGATTTAACTGTCTAGCGATCAACATAATTCAATTTTGTTTCTTGAAGAATAACCCTAGTGAGATTGTATTTGTGGAGGAAGGACTTGATTAGAGCTCTCTTTTGTGAATAATCATAAGAGGTATTGACCTCCCAATTGTGACTTGCCCGATTTCTCATAATTGATGTTTGAAAAGAGACCAACAATCTCTCTATTCAGTTTACTCAATTTCTTGGCCATAGTGGGCTTCTTTTTCCTAGATGGAATAGCCATGATGCACCTGTGGTGTTCTTTTAGACATGGTGCCAAGATTTGGATGGCTCTTGTTGGTGAGTGTTGCTAATGTTGGGGTGACCTCTTCTACCTCTGTTTCATCCTGCTTCTCTTGTAAAAGAGTGCCAAGCGGATGCGGGTGATCTTTAGCAACGGGTGAGAGTTGTTCGCCTTATCCGCAGTGGGGGATGGTGGGGCGGTGGAGAGGGATAAGGGGTTGGATGGATATTCGTCATCTAATTCTTGGTCAATGCCAATCGTGGAGTATTTTGTTCTTGGGACGAGGAAAGTTTTTGGTTATTTATGATGATGACATATTTTCTGGTGATATTGTCACAACTTGCGGGTCGGGGTCGGGGATAAGAAGTGGTGTAGAGGATGGGGTTTTGGAGATTGGTGGATAAGAAGTGGTGTAGGGATGGGGTTTTGGAGATTGGTGGATAAGAAGTGGTGTAGAGGATGGGGTTTTGGAGATTTTGGTGGAAAGTAGGGTGAGGGGTTGGTGGCCTTTGGTTTATGTGGGGAGACTGAGTTTATGGGGCATGGTAGATGGGGGGGTGGAGGAGTATGGTTTAGTTGGGGGATTGACCTTCTTTTATAGGAGTTGGCTTGGAGGGTAGGGGGATGTCCATGGCGGATGGGATTGGTCATTTACCTTTTTGGGGCTTTGTGGTATGACCATAGATTCTGATATGTGTAAATTTGGTGTTGAGTCTGGTTGTACTTGAGAGGTCCCTTTAGGTGTTGTTTCTCGGTGGTTTGACCAATGGTGTGGTTCAAGAATGCCGCAAGAAATATCTATAATAAACTCAGTATTCTTTGAGGTACAAAATCTTTTCCGTGCTTGTTTAGTGCACTAGTAGCCAATCATAACATCAACAAATGGTTCTTCATTAAAGGAAGGCTCGGTCAATATAATGACCATAAGGGGAATCTTGGAGGAAGATGATGGTATTGAGACTTTTGCTTTCATAATGGTGGCTTCCATAAGGTCTATTCTTGATGAGGTTTTTTTTAGCCATCTCAACAAAACCTCCACGGGCATCTCCCATGTGTTTCAAAGTTTCAATGTCCCAACGATTGAGAGGCAAATTTTTTATTTTAATCAACCTTCATGTGAGGGAACCACGGGATCGAGGGAACCACGGGATCAATCAGGTGCTTTTCACCCACCAGACTATGGTTCTATTTTCCCAACGTAGTTTCCAACTTTTTGTTAGTCTTTTTTATTTTACAACCTAATGAGACTTGCTCCTTTGACCTGCAATAGAGAATCGCCTTGTCTACTCTACGGAGTTTTAGTCGGCAAAAGTCATTGAACATGAATTGGATGCTCTTGTTTATCATAAACCAGTCATCGTGAAAATGTTTTCGTGTGACAATCACCATCGTATCCCATACAGTATGAATGGGGGAGAGGGGAAACTTGTTATTGATCGTCTTTGTCTTTTTGTTTAGAATCGAAAGGTATGTTTCTACACTGTCTTTCTATTTTCTGGCATTTGTGGCGATTTTTTAGTAATAGGTAAAGGTTGTGTAGGTTGATAGATGTGTTTGTGGTTTTGTCTTCTAGTCTGAGATCTTGAGTTTAGTTGATGGTCTGGTATTTTAGTGGACAGGTCTGTCGTCTAACTCAATTGCATAGGTTTTCCTATCAATTACAGATTTGAATCTCTGAAGTATTTGGTTAGTGCCATAGGTCAAATGTTAGGATTCAAAATCCTCTAAGTATGTCATGGGTCAAATGTTAGGATTCAAAATCCTCTGAGTATGCCATGGGTCAAAGGTTAGGATTCAAAATCCTCTAAGTATTTGGTATGGTGTCATGGGTCAAAAGTTACTGTCCAAATGGATTCAAAATCCTCTGAAGTACTTGGTGTGTGCCATGGGTTGGGTTACTGTCCAAATGAAATTCTGGCTGGTTGATGCAAAATTATTGCTGTCGAAGGTACAAAGCAAAAACAGCAACCAGATGCTCTTTGAGAAATCGAGGAAATCTTCAGAGATGGATTTCTAGGTTTTTTATCGGTGTTGTCGTGGGCTGTGCAGGCATCGTCGGAGAAGCGGCTGTACACGTTTATTAGCGTCGGAAGTCAGAGGAGCGGTTGTCGTCGTGGTTTTCTTTAGTCGGAGGAGCGGCTTGCGGGCCGTGCAGGTGTGGGATCGGAGGGGCGACTGTCATTTTGGTCTTCTACGGTCGTGGCTGTCGTTGGAGGAGCGGTAGTCCCAGCGATTCATGGCGCCAGAAGTTGCGGCTCTTTGTCTTTTGGAATGTTGCTCGCGACTCTTGTCTTCCCCACCTCGGCACGATGCAAGAAGTCGCAACTCTTCGTCTTCCAAAAGTTGCAACTCTTCGCCTTCCAAAAGTTGCGACTTTGTTGGGAGGCAACAGCGACGACATCAAGACGGCGGTTTTGGAAGTCGTGACTCTCTCTACACCTAAAAAAAAGTTTTCTGTCCCTATGGCATTGTTAAACAAAGCAGACTCATTGACTTGGCTCCCTAGTGCTAACGGGGTCTTTTCTACAAAATCCTTGATGATGGACATGGGAAAAAAGTAGAAGCAATAAATCCCACCCTAGCAAAGACGGAATGGAAAGGATGTCAACCTAAAAAGGTGAAGTTCTTCCTCTGGGAAATAGACCTAAAGCCGTTAGCACAAGTGAAAATCTTAAAAAAAAAAAAAAAAAGAATGTCTTACATCACTCTTTCTCCAAATTGGTGTCCATTATACAAGAAAGAAAACGAATCACAAAACCACTTGTTTATGCAATGCACATACACTCAGAATTTCTGGATAAAGATTCTCAATATATTCGGATGACATCTCATATTTCTTAGGGAGATAATGATTTTTTGGATATAGCCTTAACGTATCGCCCTTTCAAGAATGCAAAAGATACCCTTTCAAGAATGCAAAAGACCTATTATTGGAAAAACCTCATCATGGCTTTCTTTTGGAATAGGTGGAAAGAAAGAAATTAGAGAATATTTGTTTACCAAGCTATATCTTGGTGTAATCTGTCTAATATTTTTACTTTCTATAATTATACCTCCTTCATTGATCTCAAATACCTAGATAAGGACTCGATGAGAAAATACCTGGTTCAGGTGACCAAACCCTAGCATCAACCAAACCCTAAGCATCAACCAAAGAGCCAACATGAACCAGGGACAGGGAGAGAGCTCAAAAGTACCATCCAGTCCTTAATTTCCTCTTTCTGTAGCAATCTTCTAAAAACAAGACTCCACAAGCGAGTTGAAACATCTTAGAATTCCAAAACCAAACCTTGTGGTGAAGAAGAAATACTGAGCAAACGAGGGAATTGAAGCTTCAAAGGAGAGTACTAAGCCATAGGTCTTGCCGAAAAAGAATTTCTACAACCATTGACTTCTAAGACTCCATTTCCTTTCTGCCTTTGGATGCATAGCCTTTAAACCGTGAATGCTAGTAGTAACTTCACGGCAAAAGGTTCGGCAAAAATTTAGGTCTCGACTGATAATCATTTGGTGACTTTCTTTTGTTTTGTTATTTACTTTCCAAAATGTTTTTCAAAACCCGAGACAAGTTTTCAAAAATGAAATAATTATCAATTGGGTCTACTTATGAGTTGTACTTCCGTAGGGCTTTGATGAATATATGAATTTGGTTTTGGATGATGCCGAGGAGGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGTTTGTCTCATCCTCTTCGGTATCCAAATCTTTCTGTGATTAAACACAGACTAAAAAGTTGTTTTGTCCTCCACATTTTCAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACGTAAGCTCCTGAAGCTCTCTCTTTCACCGTATAATTCTTCTCTTTGAAAAGTTCATGAATGATATAATCATATGCAAAATTACAGGGGGAAGTGATGGACATTTTTTGGTGCACCCATAATAGAGATAGCGAAGTCAGCCCTTTCATGTTGAAACTTGAAGGCCTTGTGTTACCATAG

mRNA sequence

ATGCTTAAACCGGAACCAAACTCCCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTAGGCCTTCGATTTCCTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCCCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAACTTGATTTTCAGAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGGCTTTGATGAATATATGAATTTGGTTTTGGATGATGCCGAGGAGGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACAGATAGCGAAGTCAGCCCTTTCATGTTGAAACTTGAAGGCCTTGTGTTACCATAG

Coding sequence (CDS)

ATGCTTAAACCGGAACCAAACTCCCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTAGGCCTTCGATTTCCTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCCCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAACTTGATTTTCAGAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGGCTTTGATGAATATATGAATTTGGTTTTGGATGATGCCGAGGAGGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACAGATAGCGAAGTCAGCCCTTTCATGTTGAAACTTGAAGGCCTTGTGTTACCATAG
Homology
[Close]
BLAST of CmoCh01G009860 vs. Swiss-Prot
Match: RUXE_MOUSE (Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+
Sbjct: 28  RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87

Query: 130 MNTDS 135
            +  +
Sbjct: 88  QSVSN 92

[Close]
BLAST of CmoCh01G009860 vs. Swiss-Prot
Match: RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+
Sbjct: 28  RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87

Query: 130 MNTDS 135
            +  +
Sbjct: 88  QSVSN 92

[Close]
BLAST of CmoCh01G009860 vs. Swiss-Prot
Match: RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+
Sbjct: 28  RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87

Query: 130 MNTDS 135
            +  +
Sbjct: 88  QSVSN 92

[Close]
BLAST of CmoCh01G009860 vs. Swiss-Prot
Match: RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+
Sbjct: 28  RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87

Query: 130 MNTDS 135
            +  +
Sbjct: 88  QSVSN 92

[Close]
BLAST of CmoCh01G009860 vs. Swiss-Prot
Match: RUXE_PIG (Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+
Sbjct: 28  RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87

Query: 130 MNTDS 135
            +  +
Sbjct: 88  QSVSN 92

[Close]
BLAST of CmoCh01G009860 vs. TrEMBL
Match: A0A0L9TF55_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan627s009000 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.2e-26
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNTDSEVSP 139
           M+T   +SP
Sbjct: 84  MSTGYVLSP 92

[Close]
BLAST of CmoCh01G009860 vs. TrEMBL
Match: G7IMA2_MEDTR (Small nuclear ribonucleoprotein OS=Medicago truncatula GN=MTR_2g104440 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.9e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860 vs. TrEMBL
Match: A0A151SRH5_CAJCA (Small nuclear ribonucleoprotein E OS=Cajanus cajan GN=KK1_003688 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860 vs. TrEMBL
Match: A0A0E0AQV1_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE+NVKK ++KSLGRILLKGDNITLM
Sbjct: 15  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74

Query: 130 MNT---DSEVSPFMLK 143
           MNT   D  + P+ LK
Sbjct: 75  MNTSIRDMALLPYCLK 90

[Close]
BLAST of CmoCh01G009860 vs. TrEMBL
Match: A0A0E0GTP6_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE+NVKK ++KSLGRILLKGDNITLM
Sbjct: 15  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74

Query: 130 MNT---DSEVSPFMLK 143
           MNT   D  + P+ LK
Sbjct: 75  MNTSIRDMALLPYCLK 90

[Close]
BLAST of CmoCh01G009860 vs. TAIR10
Match: AT2G18740.1 (AT2G18740.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 114.0 bits (284), Expect = 7.9e-26
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860 vs. TAIR10
Match: AT4G30330.1 (AT4G30330.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 114.0 bits (284), Expect = 7.9e-26
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK++K LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLM 83

Query: 130 MN 132
           MN
Sbjct: 84  MN 85

[Close]
BLAST of CmoCh01G009860 vs. NCBI nr
Match: gi|920682269|gb|KOM29041.1| (hypothetical protein LR48_Vigan627s009000 [Vigna angularis])

HSP 1 Score: 125.6 bits (314), Expect = 7.5e-26
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNTDSEVSP 139
           M+T   +SP
Sbjct: 84  MSTGYVLSP 92

[Close]
BLAST of CmoCh01G009860 vs. NCBI nr
Match: gi|357455361|ref|XP_003597961.1| (small nuclear ribonucleoprotein [Medicago truncatula])

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860 vs. NCBI nr
Match: gi|1012346234|gb|KYP57426.1| (Small nuclear ribonucleoprotein E [Cajanus cajan])

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860 vs. NCBI nr
Match: gi|255629853|gb|ACU15277.1| (unknown [Glycine max])

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKS+K+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860 vs. NCBI nr
Match: gi|734341007|gb|KHN09645.1| (Small nuclear ribonucleoprotein E [Glycine soja])

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKS+K+LGRILLKGDNITLM
Sbjct: 34  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLM 93

Query: 130 MNT 133
           MNT
Sbjct: 94  MNT 96

The following BLAST results are available for this feature:
BLAST of CmoCh01G009860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RUXE_MOUSE1.8e-1967.69Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=1 SV=1[more]
RUXE_HUMAN1.8e-1967.69Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1[more]
RUXE_CHICK1.8e-1967.69Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1[more]
RUXE_BOVIN1.8e-1967.69Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1[more]
RUXE_PIG1.8e-1967.69Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1[more]
BLAST of CmoCh01G009860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0L9TF55_PHAAN5.2e-2689.86Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan627s009000 PE=4 SV=1[more]
G7IMA2_MEDTR8.9e-2698.41Small nuclear ribonucleoprotein OS=Medicago truncatula GN=MTR_2g104440 PE=2 SV=1[more]
A0A151SRH5_CAJCA1.2e-2596.83Small nuclear ribonucleoprotein E OS=Cajanus cajan GN=KK1_003688 PE=4 SV=1[more]
A0A0E0AQV1_9ORYZ1.5e-2582.89Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1[more]
A0A0E0GTP6_ORYNI1.5e-2582.89Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
BLAST of CmoCh01G009860 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18740.17.9e-2687.30 Small nuclear ribonucleoprotein family protein[more]
AT4G30330.17.9e-2688.71 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmoCh01G009860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|920682269|gb|KOM29041.1|7.5e-2689.86hypothetical protein LR48_Vigan627s009000 [Vigna angularis][more]
gi|357455361|ref|XP_003597961.1|1.3e-2598.41small nuclear ribonucleoprotein [Medicago truncatula][more]
gi|1012346234|gb|KYP57426.1|1.7e-2596.83Small nuclear ribonucleoprotein E [Cajanus cajan][more]
gi|255629853|gb|ACU15277.1|2.8e-2596.83unknown [Glycine max][more]
gi|734341007|gb|KHN09645.1|2.8e-2596.83Small nuclear ribonucleoprotein E [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR027078snRNP-E
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G009860.1CmoCh01G009860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 74..129
score: 4.3
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 65..131
score: 2.6
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 65..134
score: 7.48
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 69..136
score: 5.2
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 69..131
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G009860Cucsa.236110Cucumber (Gy14) v1cgycmoB0651
CmoCh01G009860CmaCh01G009460Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G009860Csa7G206940Cucumber (Chinese Long) v2cmocuB483
CmoCh01G009860ClCG09G010690Watermelon (Charleston Gray)cmowcgB376
CmoCh01G009860CSPI07G09600Wild cucumber (PI 183967)cmocpiB489
CmoCh01G009860CsaV3_7G021700Cucumber (Chinese Long) v3cmocucB0580
CmoCh01G009860Cla97C09G173410Watermelon (97103) v2cmowmbB491
CmoCh01G009860Bhi09G001364Wax gourdcmowgoB0607
CmoCh01G009860CsGy7G009170Cucumber (Gy14) v2cgybcmoB917
CmoCh01G009860Carg25824Silver-seed gourdcarcmoB1432
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G009860Cucumber (Chinese Long) v3cmocucB0574
CmoCh01G009860Watermelon (97103) v2cmowmbB495
CmoCh01G009860Watermelon (97103) v2cmowmbB498
CmoCh01G009860Wax gourdcmowgoB0608
CmoCh01G009860Wax gourdcmowgoB0621
CmoCh01G009860Cucumber (Gy14) v1cgycmoB0135
CmoCh01G009860Cucumber (Gy14) v1cgycmoB0677
CmoCh01G009860Cucurbita maxima (Rimu)cmacmoB044
CmoCh01G009860Wild cucumber (PI 183967)cmocpiB484
CmoCh01G009860Cucumber (Chinese Long) v2cmocuB478
CmoCh01G009860Melon (DHL92) v3.5.1cmomeB387
CmoCh01G009860Melon (DHL92) v3.5.1cmomeB397
CmoCh01G009860Watermelon (Charleston Gray)cmowcgB377
CmoCh01G009860Watermelon (Charleston Gray)cmowcgB379
CmoCh01G009860Watermelon (97103) v1cmowmB401
CmoCh01G009860Watermelon (97103) v1cmowmB402
CmoCh01G009860Watermelon (97103) v1cmowmB405
CmoCh01G009860Cucurbita pepo (Zucchini)cmocpeB418
CmoCh01G009860Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G009860Cucurbita pepo (Zucchini)cmocpeB464
CmoCh01G009860Bottle gourd (USVL1VR-Ls)cmolsiB397
CmoCh01G009860Bottle gourd (USVL1VR-Ls)cmolsiB407
CmoCh01G009860Cucumber (Gy14) v2cgybcmoB914
CmoCh01G009860Melon (DHL92) v3.6.1cmomedB444
CmoCh01G009860Melon (DHL92) v3.6.1cmomedB454