Carg25824 (gene) Silver-seed gourd

Overview
NameCarg25824
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSmall nuclear ribonucleoprotein E
LocationCucurbita_argyrosperma_scaffold_332 : 149169 .. 159100 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACCCTTTTCCTTCGTTGGAGTGAAGTGGCTGCTTAGCTTAAACCGGAACCAAACTCTCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTGGGCCTTCGATTTCCTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCGTACCTTCTCATCTCAATTCCTTCTTCTTCATTTCATTCTCCATTTTCTATCATTTTTCTGCGTCTTTCACTTACACATTTTATTTCTCTTTCAATTGATGTTGGTGCGCCTTCAGAACTTGATTTTCAGGTTCCTTCAAAGTGTAAGTTCCTTTTCAGCTTCATTTTGTTTATAGTTTTTCATAGTGAAATTGATGTTTTCTATCTCTGATTTTATTCACGTAATCTTCACGCTCGAAATTTATACAGAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGTAAGTGGTCCTTTTCTTTCAGAAACTATCGTGCTAATTAATAGTTTTTGTTTTTAAAATGTACGTTTAAATGCTATAAAAGCTCACTAGGGTTTAAGTTTCAAATGTTGAATCGTCATCTTTTTTCTTTTCCTAAAGATTTTTCTCGAACCAAGGTAAACTAAGAACGTTGCAATCTAGATAAAATGGAAGTTAGATTAGTGAAATTGGTTATCATTTGTAGTATAAAACATTTTGTGGAGGTATTGAAATCATCAAGCATACTAAGTTAGCTTTTGAATGAATCAGTCATGCCACAGTAACAACTCTCATTGTTTGATGTGGTGAAATGTTGGGAGGTATAAAGGGTTGTGTATCTTCAAATTTACTCTCAAGAACAATAGAAACTAGTAAAAGTAGTTGAGAAGAGGAGAAATGACTCTAAAATTTGGATAGGTTCGCTTGTTTTCTGTTGATTTAATATTTCACTGTATAGAAAAGACAATTGTTTTTTTTTTTCCTTTTTGTGAAGGAAAAGAGACAGAAAAGCAAAAAAATATGAAGATACACATAAAATTGTGCTTCCCTTGGTTGTTTTGATTACACAATTCAAAATCAGCTTTCATTGAAAGAAAAAAATGCAAAAGAAAATCAGTTTATATTATTTTCTTCTGTATTAGCATAGTTGTACGTCTATGTTGGCCCCTGGAGGTTAGTAGTCGTAGTGCGAAAAATAAGTCTTTCTTCATTAGATTAGTTAAGGTTTTCTGGGTTTCGTAAAGTTAAGTTAGAAGAAGAAAGTTCTTCCTTCTTACGTAAGATTGGTATGGTAAGTTTTTTGGGTTGGAGAAAGAAAGCTTTGTTGGAGCTTCTGCAATGTCTGATGGCCCAGAAAGAAAGCTTTGTTGGAGATAGTATGCTTTGAAATTCCTTCGTAGGAAGAACTGGGATGTCATTTGACATATTTGGAAGAGCAAGAAAGTTACTGGAGAAATATATGTTTGAGCTAGGACTATGGGGTTAAAATTTTACCAATTCATTAGGTTGACATTAGTGGCCTACTAAATTTAATCCTTCAATTAAAGATTATTAAGGTCTTAAGATCTCTTTAACTGCAACATGTCTTCGGTGTTCCTTTAAGAAGAGTCTAGGTAAAAAAGAAAATGGCACTAGAAGAAGACTAGACAGAAATCTTTGGCTTCTTTTGTCTTCGGTATCATCGCGACTTTCGAAGCCGCCATCTTAGTGCCACTTTCGCTGCCTCCCTACAAAGTCGCGACTTTTGGAAGGCGAAGAGTCGCGACTCTTCGAAGGCGAAGAGTTGTGACTTCTAGCACCATGCCAAGGTGGGGAAGACGAAGAGTCGCGAGCAACATTCTGAAAGACGAAGAGTTGCGACTTCCGGCGCCATGAATCGCTATGACTACCGCTCCTCCGACGACAACCACAATCATAAAAGACCACAATGAAGCCGCCCCTCCGATCCCACATCTGCACAGCCCGTGAGCCATCCCTCCGATTGAAGAAGACCACGACGACAGTCGCTCCTCCGACTTTCGGTGCCAGTAAATGTGTACAACTGCTCCTCCTCCTCTGACGCCTGTATAGCCCATGACGACAGACGCCCCCTCGACAGCCATCGATAAAAAGCCTAGAAATCCATCTTTGAAGATTTCCTCCTTGGTTTTTCAAAGAGTAGTTGGGTTATTGTTTTTGCTTGATTGTACCTCCGACAACAAGGATTTTGTATCAACCAGCAATGATTTCATTTTGCATCAACCAGCAATGATTTCATTTTGCATCAACTATCAATGATTTTGCATCAACCAACAAGGATTTTGAATCCATTTTGCCTCAACTAGCAATGATTTTGCATCAATCAACAAGGATTTTGAATCCATTTGACAGTACCTGTGACCCGTGGCACCACACCAAATACTTCAGAGATTCAAAACTGCAATTGATAGGAAAACTTATGCGCAATTGATAGGAAAACTTATGCCATTGAGTTAAACTGCAATTGATAGGAAAACTTATGCAATTGAGTTAGACGACAGATATAGGGAACAAAAATCAAGCTATTAGAAATCACAGAGACAACTTTTTTCTTATCATTGAAATGAGGCCTTTTCCAATAGCTAAACATCCACTACTATTGGCTCCACTAAACCAAACAGTTTTTCGGAACAAATCATTGGATAGAAAAACTCACAAACAAGAAGGGTATTATTGCTGAAATCTCATTGCACCATGGAAGTGGAGGTGTCCCAGTGGGTGAAAACGAATAGGTTGGATAGTTGGATAGCTTTTTTCGATCTTATTGGAAACTATTCCTTGCTGTCCAGTAAAATACTATACCATCAACTAAACTCAAGATCTTAGAGTAGAAGACACCACAATCATAACCATCGACCTACACAACCCTTGCATGTTACCGAAAAGTCGTCACAAATGTCAGAAAATAGAAAGAGAAACATACCTTCCAATTCTAAATAAAAAGCAAAGACGATCAACAACGTTTTTTCCCTCCCCCCATTAATACTGTATGGGCTACGATACCTTCCAATTCTAAATAAAAAAGCAAAGACGATCAACAACGAGTTTTCCCTCTCTCCCATTAATACTGTATGGGCTACGATAGTGATTGTCATTCAGAAACATTTTTACGGTGACTGGTTTACGATAAACAGGAGCATCCAATCTATGCTCAATGACTCTTGCCAACTAAACCCCTACAAAGTTGACAAGGCAATTCTCCGTTGCATGTCAAAGGAGCAAGTATCATTAGTTTGAGTTTGTAATAAAAAAGGCTGGCAAAAAGTTGAAAACGATGTTGTGAAAGTAGAACCATGGTATGATGAAAAGCACTTGTTTACAACAACCCATGGAAAGTAGAATGAGATAATGATCAGATGTAGGTTTATTCCGTCTTTGAGCACCAAAGTTACTGAATTTTCCAAAGAGGCCTTTAGTGGCAAGAAATCTATCGATGAGTGTCAAGGTGGGTGGAGACCTGTTGTTTGACCATGTATAGAGTCCATTATTGAGGGGAAGATCAATGAGTTCGACTTCTCTTATGAAATTGTTGAAGTGTCTCATGCTTTTGGTGGCTTTTCCATTGGATTTTTCATGTGCCCATCGAGAGGTATTGAAATCTCCCGCCAAATGCCAATTCTCTATACATAAGCATGATAGGTCCTGTAATTGCTGCCAGATAGATGTCTTTCTTGAAACCTACCGGGGCCATAAATTCCTATATAATTATCAGCCAGTGTAAATATGGTTAGGGTGTATAAGCCTTTGGTGACTTCTGAAATGGTCAGAGTTGGGTCATTCCACATGATTAAGATCAAGCCAAAGCTGACCAACCAATATGTTTGGCACTCCATAGAGATTTAACTGTCTAGCGATCAACCTAATTCAATTTTGTTTCTCGAAGAATAACCATAGTGAGATTGTATTTGTGGAGGAAGGACTTGATTAGAGCTCTCTTTTGCGAATAATCATAAGAGGTATTGACCTCCCAATTGTGACTTGCCCGATTTCTCATAATTGATGTTTGAAAAGAGACCAACAATCTCTCTATTCAGTTTACTCGATTTCTTGGCCATAGTGGGTTTCTTTTTCCTAGATGGAATAGCCATGATGCACGTGTGGTGTTCTTTTAACCATGGTGCCAAGATTTGGATGGCTCTTGTTGGTGAGTTGGTGAGTGTTGCTAATATTGGGTGACCTCTTCTACCTTTGTTTCATCCTGCTTCTCTTGTAAAAGAGTGCCAAGCTCTGCATCCGCAAGGGTGATCTTTAGCAACGGGTGAGAGTTGTTTGCCTCATCCGCAGTGGGGGATGGTGGGGCGGTGGAGAGGGGTAAGGGGTTGGATGGATATTCGTCATCTAATTCTTGGTCAATGCCAACCGTGGAGTATTTTGTTCTTGGGACGAGGAAAGTTTTTGGTTATTTATGATGACGACATATTTTCTGGTGCTATTGTCACAACTTGCAGGTTGGGGTCGAGATAAGAAGTGGTGTAGAAGATGGGGTTTTGGAGATCGGTGGAAAGTAGGGTGAGGGGTTGGTGGCCTTTGGTTTATGTGGGGAGACTGAGTTTATGGGGCATGGTAGATGGGGAGGGTGGAGGAGTATGGTTTAGTTGGGGGATTGACCTTCTTTTATAGGAGTTGGCTTGGAGGGCAAGGGGATGTCCATGGCGGATGGGATTGGTCATTACCTTTTTGGGGCTTTGCGGTATGACCATAGACTTTGATATGTGTAAATTTGGTGTTGAGTCTTGTTGTACTTGAGAGGCCCCTTTAGGTGTTGTTTCTCGGTGGTTTGACCAATGGTGTGGTCCAAGAATGCCGCAAGAAATATCTATAATAAACTCAGTATTCTTTGAGGTACAAAATCTTTTCCGTGCTTGTTTAGTGCGCTAGTAGCCAATCATAACATCAACAAATGGTTCTTCATTAAAGGAAGGCTCGGTCAATATAATGACCATAAGGGGAATCTTGGAGGAAGATGATGGTATTGAGACTTTTGCTTTCATAACGGTGGCTTCCATAAGGTCTATTCTTGATGAGGTTTTTTTAGCCATCTCAACAAAACCTCCACAGGCATCTCCCATGTGTTTCAAAGTTTCAATGTCCCAACAATTGAGAGGCAAATTTTTTATTTTAATCAACCTTCATATGAGGGAACCACGGGATCAATATCTTTTTTATTTTACAACCTAATGAGACTTGCTCTTTTGACCTGCAACGGAGAATCGCCTTGTCTGCTCTATGGGGTTTAGTTGGCAAAAGTCATTGAGCATGAATTGGATGCTCCTGTTTATCATAAACCAGTCATCGTGAAAATGTTTCCGTGTGACAATTACCATCGTATCCCATACAGTATGAATGGGGGAGAGGGGAAACTTGTTATTGATCGTCTTTGCTGTTTTGTTTAGAATCGAAAGGTATGTTTCTACATGTCTTTCTATTTTCTGGCATTTGTGGCGACTTTTTAGTAATAGGTAAAGGTTGCGTAGGTTGATAGATGTGTTTGTGGTTTTGTCTTCTAGTCTGAGATCTTGAGTTTAGTTGATGGTCGGGTATTTTAGTGGACAGCAAGGAATAGTTTCTAGTAAGATTGAAAAAAAAGCTATCCAACCTTTTCGTTCTTTGCCCACTGGGTTGTTTGTTTGTCCTCCATTTCCATGAAGCAATGAGATTTTAGCTATAGTACCCTTCTAGTTTGTGAGTTTTTCTATTCAAAGTGATTTATGATAGCTTGATTCTTGTTCCCCTGCATCTGTCGTCTAACTCAATTGCATAGGTTTTCCTATCAATTACAGATTTGCATCTCTGAAGTATTTGGTTGGTGCCATGGGTCAAATGTTAGGATTCAAAATCCTCTGAGTATGCCATGGGTCAAAATGTTGAATTTCAAAATCCTCTGAGTATGCCATGTGTCAAAGGTTAGGATTCAAAATCCTCTAATTATGCCATGGGTCAGTATGCCATGTGTCAAAGGTTAGGATTCAAAATCCTCTCAATGTGGGTCAGTATGCCATGTGTCAAAGGTTAGGATTCAAAATCCTCTGAATATGCCATGGGTTAGGATTCAAAATCCTCTTGAGTATGCCATGGGTCAAAGGTTAGGATTCAAAATCCACTGAGTATTTGGTGAAGTATTTGGTATGGTGTCATGGGTTAAAGGTTACTGTCTAAATGGATTCAAAATCCTCGAGTGGATTCAAAATCCTCCAAAGTATTTGGTGTGTGCCATGGGTTGGGTTACTGTCCAAATGAAATTCTGGCTGGTTGATGCAAAATTATTGTGGTCGAAGGTACAAGGCAAAAACAGCAACCAGTTGCTCTTTGAGAAATCGAGGAAATCTTCAGAGATGGATTTCTAGGTTTTTTATCGGTGTTGTCGTGGGCTGTGCAGGCATCGTCGGAGAAGCGGCTGTACACGTTTATTAGCGTCGGAAGTCAGAGGAGCGGTTGTCATCGTGGTTTTCTTTAGTCGGAGGAGCGGTTGTCATCGTGGTTTTCTTTAGTCGGAGGAGCGGCTTGCGGGCCGTGCAGGTGTGGGATCGGAGGGGCGACTGTCATTTTGGTCTTCTACGGTCGTGGCTGTCGTCGGAGGAGCGTTAGTCCCAGCGATTCATGGCGCCAGAAGTCGCGGCTCTTTGTCTTTCGAAATGTTGCTCGCGACTCTTGTCTTCCCCACCTCGGCACGACGCAAGAAGTCGCGACTCTTCGTCTTCCAGAAGTTGCAACTCTTCGCCTTCCAAAAGTCGCAACTCTTCGCCTTCCAAAAGTTGCGACTTTGTTGGGAGGCAACGGCGACGACATCGAGACGGCGGTTTTAGAAGTCGTGAGAGAGGTCTTTTCTACAAAATCCTTGATGATGGACATGGGAAAAAAGTAGAAGCAATAAATCCCACCCTAGCAAAGACGGAATGAAAAAGATGTCAACCTAAAAAGGTGAAGTTCTTCCTCTGGGAAATAGACATAAAGCCATTAGCACAAGTGAAAATCTTAAAAAAAAAAAGAATGCCTTACATCACTCTTTCTCCAAATTGGTGTCCATTATGCAAGAAAGAAAACGAATCACAAAACCACTTGTTTATGCAATGCACGTACACTCAAAATTTCTAGATAAAGATTCTCAATATATTCGGATGACATCTCATATTTCTTAGGGAGATAAATGATAATAATGCAAAAGATACCCTTTCAAGAATGCAAAAGGCCTCTTATTGGAAAAACCTCATCATGGCTTTCTTTTGGAATAGGTTTGGAATAGGTGGAAAGAAAGAAATTAGAGAATATTTGTTTACCAAGCTATATCTTGGTGTAATCTGTCTAATATTTTTACTTTCTATAGTTATACCTCCTTCATTGATCTCAAATACCTAGATAAGCACTCGATGAGAAAATACCTGGTTCAGGTGACCAAACCCTAGCATCAACCAAGGAGCCAACATGAACCAGGGACAGGGAGAGAGCTCAAAAGTACCATCCAGTCCTTAATTTCCTCTTTCTGTAGCAATCTTCTAAAAACAAGACTCCACAAGCGAGTTGAAGCATCTTAGAATTCCAAAACCAAACCATCTTCTAAAAACAAGACTCCACAAGCGAGTTGAAGCATCTTAGAATTCCAAAACCAAACCTTGTGGTGAAGAAGAAATACTGAGCAAACGAGGGAATTGAAGCTTCAAAGGAGAGTACTAAGCCATAGGTCTTGCCGAAAAAGAATTTCTACAACCATTGCCTAGTTTCAAATGAGCAAGAAAATTTATGCGCAGCCATACTTCGGAAATACTCAACCATTGACTTCTAAGACTCCATTTCCTTTCTGCCTTTGGATGCTTAGCCTTTAAACCGTGAATGCTAGTAGTAACTTCACGGAAAAAGGTTCGGCAAAAATTTAGGTCTCGACTGATAATCATTTGGTGACTTTCTTTTGTTTTGTTATTTACTTTCCAAAATGTTTTTCAAAACCCGAGACAAGTTTTAAAAAATGAAATAATTATCAATTGGATCTACTTATGAGTTGTACTTCCGTAGGGCTTTGATGAATATATGAATTTGGTTTTGGATGATGCCGAGGAGGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGTTTGTCTCATCCTCTTCGGTATCCAAATCTTTCTGTGATTAAGTACAGACTAAAAAGTTGTTTTGTCCTCCACATTTTCAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACGTAAGCTCCTGAAGCTCTCTCTTTCACCGTATAATTCTTCTCTTTGAAAAGTTCATGAATGATATAATCATATGCAAAATTACAGGGGGAAGTGATGGACATTTTTTGGTGCACCCATAATAGAGATAGCGAAGTCAGCCCTTTCATGTTGAAACTTGAAGGCCTTGTGTTACCATAGAATGTTCATTTTACAGTCAAATGGTTGGTTGTTTTTGTAGTCTTGTTTGAAGAAAGTAGAATACAGTTTATGCCAGCCATTGCACTCAACTCAGCCACCTCTATTCTTGTTGCATGGATACTCAACTCTATGATTCATGGCTAGATTTGAATATCTATTTCCCTATTGGATTGCTTGAAACTACTAAAAATTTGGCAACAATGTTTATAATTATACGATAATCCTGGTATGATGACATGCCTTAGAACTCTTAAGGTGATTGTAGGACTTGTTTGGCTTTACCTCATGGTGCGGCTATACCCTCCCATCTCATGTCTCCTACAACATTTAGCCACCAAGACATGTTTTCCTGGACATATTTGGTTTGCTCTTTAGAGACAAAAAGAACCAACAAATTCATTTCCGTTTCTCAGTTTCTTAAAAAGAGTTCAAATGGGAGAGGAAGCCACAAGAGAATTAAGAATAAAATACATCAAAGAAACGAGCTGAACATGAGATAATCACCATTGTGTTCTTCTCAACCCCAAGAAAGAAACAAAAAAGCAACTGTTAACTCAGGAACACTGAATTGGTGAGGATCCTTGAAATAATGGATCCTACAAACTCGAGAGTTCCCCGAAGTTCTTACCTAACCAAAAGGAAAGCTAATTTCTTCAACAAAATAATGACATGAAATTCAAGTCTCTGGAGTTAGGTTATGGAACAGAGGGTGGTGGTCTGCAATCAAAAGATTAGCTATGAATCACAATGCCAGAAAAATTGTGTAAGAATTCGAACCAAAAGGCCGGGAACGAGAGCTCCCGAGTCTCTCAGTTCCTAAATTCAGCATGCACAGCCACTCCTTTGCTCGGTCTCCACAACGGTTTCGGGGATTCCTTGAAAATATCTGCAATTACATTCATGATCAGTAAGGCGTTGGTGTTTTTCGGTCTCGTCCAAAGTCTTGTAATGAAAAATAGAATATGCAACATCATATAAAAGTATGGCAAATGAAGGACACCACCAAAAATAAAACACAAACACAGATTTCATGGCAACTCTAATCACAAAAAAATGTTGAAATTCCGAGGTAAAATACACATAACCGAAAAAATGGAAATAATCGATGGAATAGAATATTTAATAACTACCACGCCAAATTCAGTTGTATTAGCTCGATTCTTTCAGATAACGTCACATGGAAGAAAAATATAGTGATGCATGAAGAAACAGAAGAAAAAAATATATATATACGTACACAAAACAAGGTAATGCTATGTTTTAGAAACTCATAAAATCCTAATAACATTGCAATAAATCCTTTCGACAAAATTAACGTTTTAGAAACTTACATATCCTGTTCGTGTTCGTTGGCTAATGCAGTCTTGGCAATGCATAAGAAAGCAGCATCAACGTTGTAGTCTTCTTTAGCCGATGTCTCGAAGTAAGGAATATTATCTTTTGAAGCACACCATTCCCTAGCTTTCTT

mRNA sequence

TTACCCTTTTCCTTCGTTGGAGTGAAGTGGCTGCTTAGCTTAAACCGGAACCAAACTCTCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTGGGCCTTCGATTTCCTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACGGGGAAGTGATGGACATTTTTTGGTGCACCCATAATAGAGATAGCGAAGTCAGCCCTTTCATGTTGAAACTTGAAGGCCTTGTGTTACCATAGAATGTTCATTTTACAGTCAAATGGTTGGTTGTTTTTGTAGTCTTGTTTGAAGAAAGTAGAATACAGTTTATGCCAGCCATTGCACTCAACTCAGCCACCTCTATTCTTGTTGCATGGATACTCAACTCTATGATTCATGGCTAGATTTGAATATCTATTTCCCTATTGGATTGCTTGAAACTACTAAAAATTTGGCAACAATGTTTATAATTATACGATAATCCTGGTATGATGACATGCCTTAGAACTCTTAAGGTGATTGTAGGACTTGTTTGGCTTTACCTCATGGTGCGGCTATACCCTCCCATCTCATGTCTCCTACAACATTTAGCCACCAAGACATGTTTTCCTGGACATATTTGGTTTGCTCTTTAGAGACAAAAAGAACCAACAAATTCATTTCCGTTTCTCAGTTTCTTAAAAAGAGTTCAAATGGGAGAGGAAGCCACAAGAGAATTAAGAATAAAATACATCAAAGAAACGAGCTGAACATGAGATAATCACCATTGTGTTCTTCTCAACCCCAAGAAAGAAACAAAAAAGCAACTGTTAACTCAGGAACACTGAATTGGTGAGGATCCTTGAAATAATGGATCCTACAAACTCGAGAGTTCCCCGAAGTTCTTACCTAACCAAAAGGAAAGCTAATTTCTTCAACAAAATAATGACATGAAATTCAAGTCTCTGGAGTTAGGTTATGGAACAGAGGGTGGTGGTCTGCAATCAAAAGATTAGCTATGAATCACAATGCCAGAAAAATTGTGTAAGAATTCGAACCAAAAGGCCGGGAACGAGAGCTCCCGAGTCTCTCAGTTCCTAAATTCAGCATGCACAGCCACTCCTTTGCTCGGTCTCCACAACGGTTTCGGGGATTCCTTGAAAATATATATCCTGTTCGTGTTCGTTGGCTAATGCAGTCTTGGCAATGCATAAGAAAGCAGCATCAACGTTGTAGTCTTCTTTAGCCGATGTCTCGAAGTAAGGAATATTATCTTTTGAAGCACACCATTCCCTAGCTTTCTT

Coding sequence (CDS)

ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACGGGGAAGTGA

Protein sequence

MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIVNVKKKSKKSLGRILLKGDNITLMMNTGK
Homology
[Close]
BLAST of Carg25824 vs. NCBI nr
Match: PNS93596.1 (hypothetical protein POPTR_018G096200v3 [Populus trichocarpa])

HSP 1 Score: 112.1 bits (279), Expect = 7.1e-22
Identity = 62/79 (78.48%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKS 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               VN+KKKS+KS
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEVNIKKKSRKS 60

Query: 61 LGRILLKGDNITLMMNTGK 65
          LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79

[Close]
BLAST of Carg25824 vs. NCBI nr
Match: KNA10835.1 (hypothetical protein SOVF_140750 isoform B [Spinacia oleracea])

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-21
Identity = 61/79 (77.22%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKS 60
          MASTKVQRIMTQPIKARIQIWLFEQKD RIEGRII               VNVKKK++KS
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDARIEGRIIGFDEYMNLVLDDAEEVNVKKKTRKS 60

Query: 61 LGRILLKGDNITLMMNTGK 65
          LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79

[Close]
BLAST of Carg25824 vs. NCBI nr
Match: ACF22772.1 (small nuclear ribonucleoprotein E [Brachypodium distachyon])

HSP 1 Score: 109.0 bits (271), Expect = 6.0e-21
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKS 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               +NVKK ++KS
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKS 60

Query: 61 LGRILLKGDNITLMMNTGK 65
          LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79

[Close]
BLAST of Carg25824 vs. NCBI nr
Match: EAZ05598.1 (hypothetical protein OsI_27814 [Oryza sativa Indica Group] >EAZ05615.1 hypothetical protein OsI_27832 [Oryza sativa Indica Group] >EEE68051.1 hypothetical protein OsJ_26051 [Oryza sativa Japonica Group])

HSP 1 Score: 108.6 bits (270), Expect = 7.9e-21
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKS 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               +NVKK ++KS
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKS 60

Query: 61 LGRILLKGDNITLMMNTGK 65
          LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79

[Close]
BLAST of Carg25824 vs. NCBI nr
Match: ONM28487.1 (Small nuclear ribonucleoprotein family protein [Zea mays] >PWZ31512.1 Small nuclear ribonucleoprotein E [Zea mays])

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-20
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKS 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               +NVKK ++K+
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKT 60

Query: 61 LGRILLKGDNITLMMNTGK 65
          LGRILLKGDNITLMMN+GK
Sbjct: 61 LGRILLKGDNITLMMNSGK 79

[Close]
BLAST of Carg25824 vs. TAIR10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-20
Identity = 57/88 (64.77%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------V 60
          MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRI                V
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKSLGRILLKGDNITLMMNTGK 65
          ++KK ++K LGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of Carg25824 vs. TAIR10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-20
Identity = 57/88 (64.77%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------V 60
          MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRI                V
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKSLGRILLKGDNITLMMNTGK 65
          ++KKK++K LGRILLKGDNITLMMN GK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88

[Close]
BLAST of Carg25824 vs. Swiss-Prot
Match: sp|A4FUI2|RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-09
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 0 

Query: 5  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKK 62
          KVQ++M QPI         ++RIQ+WL+EQ ++RIEG II               ++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

[Close]
BLAST of Carg25824 vs. Swiss-Prot
Match: sp|P62303|RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-09
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 0 

Query: 5  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKK 62
          KVQ++M QPI         ++RIQ+WL+EQ ++RIEG II               ++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

[Close]
BLAST of Carg25824 vs. Swiss-Prot
Match: sp|P62304|RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-09
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 0 

Query: 5  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKK 62
          KVQ++M QPI         ++RIQ+WL+EQ ++RIEG II               ++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

[Close]
BLAST of Carg25824 vs. Swiss-Prot
Match: sp|P62305|RUXE_MOUSE (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-09
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 0 

Query: 5  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKK 62
          KVQ++M QPI         ++RIQ+WL+EQ ++RIEG II               ++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

[Close]
BLAST of Carg25824 vs. Swiss-Prot
Match: sp|A1XQR9|RUXE_PIG (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-09
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 0 

Query: 5  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKK 62
          KVQ++M QPI         ++RIQ+WL+EQ ++RIEG II               ++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

[Close]
BLAST of Carg25824 vs. TrEMBL
Match: tr|A0A2K1WYJ8|A0A2K1WYJ8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G096200v3 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.7e-22
Identity = 62/79 (78.48%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKS 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               VN+KKKS+KS
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEVNIKKKSRKS 60

Query: 61 LGRILLKGDNITLMMNTGK 65
          LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79

[Close]
BLAST of Carg25824 vs. TrEMBL
Match: tr|A0A0K9QUA8|A0A0K9QUA8_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_140750 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.1e-21
Identity = 61/79 (77.22%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKS 60
          MASTKVQRIMTQPIKARIQIWLFEQKD RIEGRII               VNVKKK++KS
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDARIEGRIIGFDEYMNLVLDDAEEVNVKKKTRKS 60

Query: 61 LGRILLKGDNITLMMNTGK 65
          LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79

[Close]
BLAST of Carg25824 vs. TrEMBL
Match: tr|C3SAD8|C3SAD8_BRADI (Small nuclear ribonucleoprotein E OS=Brachypodium distachyon OX=15368 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.0e-21
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKS 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               +NVKK ++KS
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKS 60

Query: 61 LGRILLKGDNITLMMNTGK 65
          LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79

[Close]
BLAST of Carg25824 vs. TrEMBL
Match: tr|A2YR87|A2YR87_ORYSI (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27814 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.2e-21
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKS 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               +NVKK ++KS
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKS 60

Query: 61 LGRILLKGDNITLMMNTGK 65
          LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79

[Close]
BLAST of Carg25824 vs. TrEMBL
Match: tr|B9FZ34|B9FZ34_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_26051 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.2e-21
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKS 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               +NVKK ++KS
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKS 60

Query: 61 LGRILLKGDNITLMMNTGK 65
          LGRILLKGDNITLMMNTGK
Sbjct: 61 LGRILLKGDNITLMMNTGK 79

The following BLAST results are available for this feature:
BLAST of Carg25824 vs. NCBI nr
Match NameE-valueIdentityDescription
PNS93596.17.1e-2278.48hypothetical protein POPTR_018G096200v3 [Populus trichocarpa][more]
KNA10835.14.6e-2177.22hypothetical protein SOVF_140750 isoform B [Spinacia oleracea][more]
ACF22772.16.0e-2175.95small nuclear ribonucleoprotein E [Brachypodium distachyon][more]
EAZ05598.17.9e-2175.95hypothetical protein OsI_27814 [Oryza sativa Indica Group] >EAZ05615.1 hypotheti... [more]
ONM28487.13.9e-2073.42Small nuclear ribonucleoprotein family protein [Zea mays] >PWZ31512.1 Small nucl... [more]
BLAST of Carg25824 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18740.11.3e-2064.77Small nuclear ribonucleoprotein family protein[more]
AT4G30330.11.3e-2064.77Small nuclear ribonucleoprotein family protein[more]
BLAST of Carg25824 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A4FUI2|RUXE_BOVIN4.7e-0944.44Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1[more]
sp|P62303|RUXE_CHICK4.7e-0944.44Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=1 SV=1[more]
sp|P62304|RUXE_HUMAN4.7e-0944.44Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1[more]
sp|P62305|RUXE_MOUSE4.7e-0944.44Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1[more]
sp|A1XQR9|RUXE_PIG4.7e-0944.44Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1[more]
BLAST of Carg25824 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K1WYJ8|A0A2K1WYJ8_POPTR4.7e-2278.48Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G096200v3 PE=... [more]
tr|A0A0K9QUA8|A0A0K9QUA8_SPIOL3.1e-2177.22Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_140750 PE=4 SV=1[more]
tr|C3SAD8|C3SAD8_BRADI4.0e-2175.95Small nuclear ribonucleoprotein E OS=Brachypodium distachyon OX=15368 PE=4 SV=1[more]
tr|A2YR87|A2YR87_ORYSI5.2e-2175.95Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27814 PE=4... [more]
tr|B9FZ34|B9FZ34_ORYSJ5.2e-2175.95Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_26051 PE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: INTERPRO
TermDefinition
IPR027078snRNP-E
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25824-RACarg25824-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..63
e-value: 1.5E-12
score: 49.2
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 36..63
coord: 1..35

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg25824CmaCh01G009460Cucurbita maxima (Rimu)carcmaB1476
Carg25824CmoCh01G009860Cucurbita moschata (Rifu)carcmoB1432
Carg25824Cp4.1LG00g02650Cucurbita pepo (Zucchini)carcpeB1484
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg25824Bottle gourd (USVL1VR-Ls)carlsiB975