Cp4.1LG00g02650 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g02650
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSmall nuclear ribonucleoprotein E
LocationCp4.1LG00 : 8378926 .. 8390170 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATGTGATTTCTGTGCTATTTTTGGATGAATTGTTATGTTTTATGATGCGATGTGTTATGAATGTACTGACATACGCATGAGAGACAACGATAAATGATATGTAAGACATTATGAGAAATGACATGAAAAATTTAGGGACCTTATGCACGATTGTGTGCTCATGTATTGGGGGATACCTATTATTTAACGATATAGTACGGACGTGTACACTACTAGGTATGAGAATGATCATTATTAGGGGTGTACATGGTCCGGGTTGGAGGGATAACCCAACCCAACCCGAAACTTTTGTTATTATATGCATAAAATTTATTAAATTTAAATTTGGCAGGAGTCTAACCAGGATGTTAATGTCCTTGGACTGAACTCAATACCACTCTGGCAAATCCATTAATACAGAATTATTCTTAATATATTTTACATATTTTTATTTGGCTCGGGTCAACCCGAAGGTTTTACCCATGAACCCGAAACCGAACCGACTCAGTTCGGGTTCAGAAAAATGAACCAAACCCTACCCGAAATACTAATCCAACCCAACCCAACCTTTATAGTTCGGGTTGGGTTGGTCCGGGTTGTCGGGTTGCCGGGTTGAATGTACACCCCTAATCATTATGTTTGACATAATGTTGCTGTGACGGTCACTACTTCTAACGGGTGTCCGGCATCAAGAGCTCTCAAAGTATGCTCGCCCGTCTAGAAAAGGGGCCTAGGAGGTGTGCAAATCGACTGGTAGGTCCATACTTGCACGTGTGGGTCGCGTGTAGGAAATTAATTACCATCCAAGTTGCCCGTTAGGGTAGTCGCGATAGGAAAACATACTGTTATAATTGGTCTCATGCATGCATTCGTATGTTCTTGCATTATAACTCCATAGGGGGTTTATTACTAAGTATTTTTAAATATTCAAGCCTCGTGCTACTACATCTTTTCAGATAAAGGCAAGGCGCCTATGTAAGACTGACATAGACATCGAAATCCCAAGACTGTGGCACATGCATAGAATAGATTCACATTTAATTTTTGTAGTATAGGTTGAACTGTCTTTTCCTTTAATAGTATAGGTTGAGTTGTATTTCCATTGAGTAGTATATAGGTTATAGTATAGGGCGTTTCATTTTATATTGTTTTCGTGTATTTATTTTCTTTGTATTAGTTTTATTCCAAGGTAATAAATGAAGCGGCAAAGTTTAATGTTGACTTTTTGATAAAAAAAAATAAATAGAGTTAATTCCGTAATAAATGTTCAGAACAACATGCACCTTAGGTTAAGTATGAAATTTACTCATCTACACCATGTTTTCTTGAGAGATTCGTTAATATTTTGGTAAGAGTTAAGCTTTTGGTCGATCCACTAAGTGGTCGACTTAATCAATCTTGGACAACTTATTGAGGGTAAGTATTGAGATATAATATTTGGAGAGTGTATGTTAATCAGATCCAACTTGTCTTTACGAGTGTAGATAAATAACACCTAAGTTGTCTTTATAAGTGTAGTCAATAACACCCAAGTTGTCTTTGAGAAGAGAGTGTAGGCCAATAACACTTTTGTCTTCCCATTTAAAAAGAATACCCTAGTTGATCAGAGTGATGAATATAATAAAGATGTGTTAAATAAACATCCGAAGTTTTGAAGTTGGATAATAACACCAAGATCGGTGCTCTTGATCACTTGAGAGGTTGTGAGCTACCTTTGAGCATCTTTGAGCTTGGTGAGAAATTTGAACTTGAATATACGAACATCTTGAATATGAAGATACAAACAAAAAGAAAATACGAACATCTTGAATATGCCATCTTTGAGCTTGGTGAGAAATTTGAAGATGCTTATAACGTATTATTGGATGATCGGTGGCTGTAAAGGCTTCATTGATTGACTTAGTTGATAAACTGCGGCGGTAAAGGCTCCCCTAATTGAGTTAGGGTTTAGTTTTGGCTCGAATACCAAACCTTAACTCAAGAGGAAATTTTGATATTTAAGAATACCAAGATCAGTGCTCTGATATCATGTTAAGAATGAGAAATAGAAATAAAATTGAAATCGAGGGTGGGTGTATTGTCATTGATATTCATAACCTTTAAATAGGATACAAGCTACTAAATAATATTTATAAAAAAAGATATAAACTAATTAAATATTGAAAATAAAATAAAATATACTATAAATTAAATTATAAATAATATAATATCTAATATATATTCCATAAATAATATATACGTAAGTCCAACTCTAATAATTGAACGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNGTTTTTTTTTTTTTTTTTTTTTTCTTTCGTTGGAGTGAAGTGTCGGCTTTAGCTTAAACCGGAAGTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTAGGCCTTCGATTTCCTTTTTCCCCTTCCTTCAGAAATCTTTTCGATTCAGTCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCGTACCTTCTCATCTCAATTCCTTCTTCTTCATTTCATTGTCGCTTTTCTATCATTTTTCTGCGTCTTTCACTTATACATTTTATTTCTCTTTCAATTGATGTTGGTGCGCCTTCAGAACTTGATTTTCAGGTTCCTTCAGAGTGTAAGTTCTTTTTCAGCTTCATTTTGTTCATGGTTTTTCATAGTGAAATTGATGTTTTCTATCTCTGATTTTATTCACGAAATCTTCACGCTCCAAATTTATACAGAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGTAAGTGAGCCTTTTCTTTGAGAAACTATCGTGCTAATTAATAGTTTTTGTTTTTAAAATGTACGTTTAAATGCTATAAAAGCTTACTAGGGTTTAAGTTTCAAATGTTGAATCGTCATCTTTTTTCTTTTCCTAAAGGTTTTTCTCGAACCAAGGTAAAATAAGAACGTTGCAATCTAGATAAAATGGAAGTTAGATTAGTGAAATTGGTTATCATTTGATATTTAAAACATTTTGTGGAGGTACTGAAAGCATCAAGCATACTAAGTTAGCTTGAATTAATCAATCATGCCACAACTCTCATCGTTTGATGTGGTGAAATGTTGGGAGGTGTAAAGGGTTGTGCATCTTAAAATTTACTCTCAAGAACAATAGAAACTAGTATTGAGGAATTTTCTATTGAATGGTATATGATTGAGCACTTGTGTATGTGATACAAGTGAACGTGTACTAAAAAGCTGTCATAAAGTTTCGTTGTTCGTTCTGTCGTCGACCCTATCTATGTTTCTACGATGGCCCTATGGAGCTATATTGCAACAAATCTTCTTTTTCTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCCTGGCCCAATAAAAGTAGTTGAAAAGGGGAGAAATGACTCTAAAATTTGGATAGGTTCGCTTGTTTTCTGTTAATTCTCNGTTTCGTTGTTCGTTCTGTCGTCGACCCTATCTATGTTTCTACGATGGCCCTATGGAGCTATATTGCAACAAATCTTCTTTTTCTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCCTGGCCCAATAAAAGTAGTTGAAAAGGGGAGAAATGACTCTAAAATTTGGATAGGTTCGCTTGTTTTCTGTTAATTCTCTAATATTTCACTGTATAGAAAAGACAATTGTTTTTTTTTTTTCTTTTTGTAAAGGAAAAGAGACAGAAAAGCAAAAATCATGAAAATACACATAAAATTCTGCTTCCCTTAGTTGTTTTGATTACACAATTCAAAATCAGCTTTCATTGAAAGAAAAAAAATGCAAAAGAAAATCATTTTATATTATTTTCTTCTGTATTAGCGTAGTTGTACGTCTGGGTTGGCCCCTGGAGGTTAGTAGTCGTAGTGCGAAAATAAGTCTTTCTTCATTAGATTAGTTACGGTTTTCTGGGTTTCATAAAGTTCAGTTAGAAGAAGAAAGTTCTTCCTTCTTACGTAAGATTGGTATGGTAAGTTTTTTGGGTTGGAGAAAGAAAGCTTTGTTGGAGCTTCTGCAATGTCTGATGGCCCATAATTTCCTTTGGAGATAGTATGCTTTGAAATTCCTTCGTAGGAAGAACTGGGATGTCATTTTACATATTTGGAAGAGCAAGAAAGTTACTGGAGAAATATATGTTTGAGCTAGGACTATGGAGGTTAAAATTTTACCAATTCATTAGGTTGACAATCGTGGCCTACTAAATTTAATCCTTGAATTAAAGATTATTAAGGTCTTAAGATCTCTTTAACTGCAACATGTCTTCGGTGTTCCTTTAAGAAGAGTCTAGGTAAAAAAGAAAATGGCACTAGAAGAAGACTAGACAGAAATCTTTGGCTTCATTTGTCTTTGTGATCGTCGCGCCTTTTAAGCCATCGTCTTGGTGCCATTGTCGCTGCCTCCCTACAAAGTCGCGACTTTTGGAAGGCAAAGAGTCGCGACTTTTAGAAGGCCAGTCACGACTTTCAGAAGACGATTAGTCGTGACTTTTGGAAGACAAAGAGTTGTGACTTCTAGCGTCGTGCCAAGGTGGGGAAGACGAAGAGTTGCGAGCAACATTTCGAAAGACGAAGAGTTGCGACTTCTGGCGCCATGAATTGCTGCGACTTGCTCCTCCGACGACAACCACGATCGTAAAAGACCACAATGAAGTTGCCCTTCTGATCCCACACCTGCACAGCCCGCAAGTCGCTCCTCCGACTGAAGAAGACCACGACGACAATCGCTCCTCCATCTTTCGGCGCCAATAAACATGTACAACCGCTCCTCCTCCTCCGACGCCTATATAGCCGACGACGACAGCCGCCCCCTCGACAGCCACCGATAAAAAGCCTAGAAATCCATCCCTGTAGTAGTTGGGTTACTGTTTTTGCTTATTGTACCTCCGACAACAAGGATTTTGCATCACCAGAAATGATTTCATTTTGCATCAACCAACAATGATTTCATTTTGCATCAACCAGCAATGATTTTGCATCAACCAACAAGGATTTTGAATCCATTTGACAGTACCTTTGACCCGTGGCACCACACCAAATACTTCAGAGGATCTTGAATCCATTTGGATAGTAACCTTTGACCCATGGCACCGCACCAAATACTTCAGAGATGCAAAACTGTAATTGATAGGAAAACTTATGCAATTGAGTTAGACGACAGATATAGGGAACAAGAATCAAGCTATTAGAAATCACCTATTAGAAATCACCAGAGACAAAACTTTTTTCCTATCATTGAAATGAGGCTTTTTCCAATGGCTGAAAACATCCACTACTATTGGCTCCACTAAACCAAAAATTCAAGGGGAAACGTTTTTCGGAACAAATTATTGGATAGAAAAACTCACAAACAAGAAGGGTATTATGGCTGAAATCTCATTGCACCATGAAAGTGGAGATATAAACAAATTGTTTGTCCCAGTGGGCGAAGAACGGAAAGGTTGGATAGCTTTTTTTGATCTTATTGGAAACTATTCCTTGCTGTCCACTAAAATACTATACCATCAACTAAACTCAAGATCTTAGAGTAGAAGACAAGACCACAATCATATCCATCGACCTACACAACCCTTGCATGTTACTAAAAAGTCGCCACAAATGCCAGAAAATAGAAAGACATGTAGAAACATACCTTCCAATTCTAAATAAAAAAGCAAAGACGATCAACAATGAGTTTTCCCTCCTCCATTAATACTGTATGGGCTACGATACCTTCCAATTCTAAATAAAAAAGCAAGGACGATCAACAACGAGTTTTCCCTCTCCCCCATTAATACTGTATGGGCTACGATAGTGATTGTCATTCAAAAACATTTTTACGGTGAGTGGTTTATGATAAACAGGAGCATCCAATCTATGCTCAATGACTTCTGCCAACTAAACCCCTACAAAGTTGATAAGGCAATTCTCCGCTGCATGTCAAAGGAGCAAGTATACCATTAGTTTGTAATAAAAAAGGTTGTGAAAATAGAACCATGGTCTGATGAAAAGCACTTGTTTATAGCAACCCATGGAAAGTAGAATGAGATAATGATCAGATGTAGGTTTATTCAGTCTTTGAACACCAAAGTTACTGAATTTTCCAAAGAGGCCTTTTGTGGCAAGAAATCTATCGATGAGTGTCAAGGTGGGTGGAGACCTGTTGTTTGACCATGTATAGAGTCCATTACTGAGGGGAAGATCAATGAGTTCGACTTCTCTTATGAAATTGTTGAAGTGTCTCATGCTTTTGGTGGCTTTTCCACTGGATTTTTCATGTGCCCATCGAGAGGTATTGAAATCTCCCGCCAAAAGCCAATTCTCTATACATAAGCATGATAGGTCTTGTAATTCCTACCAGATGTCTTTCTTGAAACCTACTGGGGCCATAAATTCCTGTATAATTATCAGCCAGTGTAATATGGTTAAGGTGTATAAGCCTTTGGTGACTTCTGAAATCGTCAGAGTTGGGTCATTCCACATGATTAAGATCAAGCCAAAGCTGACCAACCAATATGTTTGGCACTCCATAGAGATTTAACTGTCTAGCGATTAACATAATTCAATTTTGTTTCTTGAAGAATAACCATAGTGAGATTGTATTTGTGGAGGAAGTACTTGATTAGAGCTCTCTTTTGCGAATCTCCCAAACCCATAACATTCCAAGAGATAATAATCATAAGAGGTATTGACCTCCCAATTGTGACTAGCCCGGTTTCTCATAGTTGATGTTTGAAAAGAGACCAACAATCTCTCTATTCAGTTTACTCGATTTCTTGGCCATAGTGGGCTTCTTTTTCCTAGATGGAATAGCCATGATGCACATGTGGTGTTCTTTTAGCCATGGTGCCAAGATTTGGATGGCTCTTGTTGGTGAGTGTTGCTAATATTGGGGTGACCTCTTCTACCTCTGTTTCATCCTGCTTCTCCTATAAAAGAGTGCCAAGCTCTGCATCCGCAAGGGTGATCTTTAGCCACGGGTGAGAGTTGTTCGCCTTATCCGCAGTGGGGGGATGGTGGGGCTGTGGAGAGGGGTAAGGGGCTGGATGCATATTCATCATCTAATTCTTGGTCAATGCCAACCGTGGAGTATTTTGTTCTTGGGACGAGGAAAGTTTTTGGTTATTTATGATGATGACATATTTTCTGGTGATATTGTCACAACTTGCGGGTCGGGGTCGGGGTCGAGGATAAGAAGTGGTGTAGAAGATGGGGTTTTGGAGATTGGTGGAAAGTAGGGTGAGGGGTTGGTGGCCTTTGGTTTATGTGGGGAGACTATGAGTTTATGGGGCATGGTAGATGGGGAGGGTGGAGGAGTATGGTTTAGTTGGGGGATTGACCTTCTTTTATAGGAGTTGGCTTGGAGGGTAGGGGGATGTCCATGGCGGATGGGATGGGATTGGTCATTACCTTTTTGGGGCTTTGTGGTATGACCATAGACTCTGTTATGTGTAAATTTGGTGTTGAGTCTTGTTGTACTTGAGAGGCCCCTTTAGGTGTTGTTTCTCAGTGGTTTGACCAATGGTGTGGTCCAAGAATGCCGCAAGAAATATCTGTAATAAACTTAGTATTCTTCGAGGTACAAAATCTTTTCCGTGCTTGTTTAGTGCGCTAGTAGCCAAGCATAACATCAACAAATGGTTCTTCATTAAAGCAAGGCTCGGTCAATATAATGACCATAAGGGGAATCTTGGAGGAAGGTGATGGTATTGAGACTTTTGCTTTCATAACGGTGGCTTCCATAAGGTCTATTCTTGATGAGGTTTTTTTAGCCATCTCAACAAAACCTCCACAGGCATCTCCCATGTGTTTCAAAGTTTCAATGTCCCAACGATTGAGAGGCAGATTTTTTATTTTAATCCAACCTTCATATGAGGGAACCACGGGATCATTCAGGTGCTTTTCACCAGACCATGGTTCTATTTTCACAGCGTAGTTTCCAACTTTTTGTTAGCCTTTTTTATTTTACAAACTAATGAGACTTGCTCCTTTGACCTGCAACAGAGAATCGCCTTGTCTGCTCTGTGGGGTTTTAGTTGGCAAAAGTCATTGAGCATGAATTGGATGCGCCTGTTTATCATAAACCAGTCATCGTGAAAATGTTTCCGTGTGACAATCACCATCGTATCCCATACAGTATGAATGGGGGAGAGGGGAAACTTGTTATTGATCGTCTTTGCTTTTTTGTTTAAAATCGAAAGGTATGTTTCTGCATGTCTTTCTATTTTCTGGCATTTGTGGCGACTTTTTAGTAACAGGTAAAGGTTGTGTAGGATAGATATGTTTGTGGTTTTGTCTTCAACTCTGAGATCTTGAGTTTGGTTGATGGTCTGGTATTTTAGTGGAGAGCAAGGAATAGTTTCTAATAAGATTAAAAAAAGCTATCCAACCTTTTCGTTCTTCACCTGGGTTGTTTGTCCCCCTAAAGCAATAATGAGATTTTAGCCATAGTACCCTTCTTGTTTGTGAGTTTTTCTATTCAAGGTGATTTCTGATAGCTTGATTCTTGTTCTCCTGCATTTGTCGTCTAACTCAATTGCATAGGTCTTCCATTCAAAATCCTCCTAAGTATTTGGTGTGTGCCATGGGTTGGGTTACTGTCCAAATGAAATTCTTGCTGGTTGATGCAAAATCCTAAGTATTTGGTGTGTGCCATGGGTTGGGTTACTGTCCAAATGAAATTCCTGCTGGTTGATGCAAAATCATTGCTGTCGAAGGTACAAGGCAAAAACAGCAACCAGTTGCTCTTTGAGAAATTGAGGAAATCTTCAGAGATGGATTCCTAGGTTTTTTATCGGTGTTGTCTGGGCTGTGCAGGCATCGTTGGAGAAGCGGCTGTACACGTTTATTAGCGTCGGAAGTCAAAGGAGCGGTTATCGTCGTGGTTTTCTTTAGTCGGAGGAGCGGCTTGCAGGCCGTGCAGGTGTGGGATCGGAGGGGCGACTGTCATTTTGGTCTTCTACGATCGTGGCTGTCGTCGGAGGAGCGGTAGTCCTAGCGATTCATGGCGCCAGAAGTCGCGACTCTTGTCTTTTGGAATGTTGCTTGCGACTTTTCGTCTTCCCCACCTTGGCTGACGCAAGAAGTCGCGACTCTTCGTCTTCCAAAAGTTGCAACTCTTCGCCTTCCAAAAGTCGTGACTTTGTTGGGAGGCAACGACGAAGACATCAAGACAGCGGTTTCAGAAGTCATGACTCTCTCTCTACACCTAAAAAAAAAGTATTTTTGTCCCTATGGCATTGTTAAACAAAGTAGACTCACTGACTTGGCTCCCTAGCGCTAACGGGGTCTTTTCTACAAAATCCTTGATGATGGACATGGGGAAAAGGTAGAAGCAATAAATCCCACCCTAGCAAAGACGGAATGGAAAGGACATCGACCTAAAAAGGTGAAGTTCTTCTACCTCTAGAAAGTAGCACATAAAGCCATTAGCACAAGTGAAAATCTTAAAAAAAAAAAAAAAAGAATGTCTTACATCACTCTTTCTCCAAATTGGTGTCCATTATGCAAGAAAGAAAACGAATCACAAAACCACTTGTTTATGCAATGCACGTATACTCAGAATTTCTGGACAAAGATTCTCAATATATTCGGATGACATCTCATATTTCTTAGGGAGATAAATGATTTTTAGACATGGCCTTGACGTACCACCCTTTCAAGAATGCAAAAGGCCTATTATTGGAAAAACCTCATCATGGCTTTCTTTTGGAATAGGTGGAAAGAAAGAAATTAGAGAATATTTGTAGAAAAGACACCGACCTACACAAAGCTTTTCAACCATGTTGTTTACCAAGCTATATCTTAGTGTAAACTGTCTAATATTTTTACATTGATCTCAAATACCTAGATAAGGACTCGACCAGAAAATACCTGGTTCAGGTGACCAAACCCTAGCATCAACCAAAGAGCCAACATGAACCAGGGAGAGAGCTCAGAAGTACCATCCAGTCCTTAATTTCCTCTTTCTGTAGCAATCTTCTAAAAACAAGACTCCACAAGCGAGTTGAAGCATCTTAGAATTCCAAAACCAAACCTTGTGGTGAAGAAGAAATACTGAGCAAACGATTGAAGCTTCAAAGGAGAGTACTGAGCCATAGGTCTTGCCGAAAAAGAATTTCTACAACCATTGCCTAGTTTCAAATGAGCAAGAAAATTTATGCGCAGCCATACTTCGGAAATACTCAACCATCGACTTCTAAGACTCCATTTCCTTTCTGCCTTTGGTATGCTTAGCCTTTAAACCGTGAATGCTAGTAGTAACTTCACGGCAAAAGGTTCGGCAGAAATTTAGGTCTCGACTGATAATTATATGGTTTTCTATAAATCTATGACTTTCTTTTGTTTTGTTATTTACTTTCCAAAATGTTTGTCAAAACCCGATACAAGTTTTAAAAAATGAAATAATTATCAATTGGATCTACTTATGAGTTGTACTTCCGTAGGGCTTTGATGAATATATGAATTTGGTGTTGGATGATGCCGAGGAGGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGTTTGTCTCACCCTCTTCGGTATCCAAATCTTTCTGTGATTAAGTACAGACTAAAAAGTTGTTTTGTCCTCCACATTTTCAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACGTAAGCTCCTGAAGCTCTCTCTTTCACCGTATAATTCTCTTTGAAAAGTAAATGAATGATATAATCATATGCAAATTACAGGGGGAAGTGATGGACATTTTTTGGTGCACCCATAATAGAGATAGCGAAGTCAGCCCCTTTCATGTTGAAACTTGAAGGCCTTGTGTTACCATAGAATGTTCATTTTACTGTCAAATGGTTGGCTGTTTTTGTACTGTTGTTTAAAGAAAGTAGAATACAGTTTATGTAAGAAGCACTCAACTCATCCACCTCTATTATTGTTGCTTGGGGGTCATTGTACTTAGTTTGCATCGGATCCTCAACTCTATCATTCATGGTTAGATTTGAATATCAATTTCTCTATTGGATTGCTTGAAACTACTAAAAATTTGGCAACAATGCTAACTTGATTATAGCTCAACTAAGACTACGATATCTTTAACAAAATGTCTGTGGTTCGAGTTTCTACTTTTACATGTTGATAATTTAGGTATTAATAGCGTTGGGATCAGATTAA

mRNA sequence

ATGCGATCCTCGTGCTACTACATCTTTTCAGATAAAGGCAAGGCGCCTATAAATCTTTTCGATTCAGTCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGAAAAGAGACAGAAAAGCAAAAATCATGAAAATACACATAAAATTCTGCTTCCCTTACGTAGTTGTACGTCTGGGTTGGCCCCTGGAGCCCGCAAGTCGCTCCTCCGACTGAAGAAGACCACGACGACAATCGCTCCTCCATCTTTCGGCGCCAATAAACATGTACAACCGCTCCTCCTCCTCCGACGCCTATATAGCCGACGACGACAGCCGCCCCCTCGACAGCCACCGATAAAAAGCCTAGAAATCCATCCCTGTAGTAGTTGGTCGGAGGAGCGGCTTGCAGGCCGTGCAGGTGTGGGATCGGAGGGGCGACTGTCATTTTGGTCTTCTACGATCGTGGCTGTCGTCGGAGGAGCGGTATTAATAGCGTTGGGATCAGATTAA

Coding sequence (CDS)

ATGCGATCCTCGTGCTACTACATCTTTTCAGATAAAGGCAAGGCGCCTATAAATCTTTTCGATTCAGTCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGAAAAGAGACAGAAAAGCAAAAATCATGAAAATACACATAAAATTCTGCTTCCCTTACGTAGTTGTACGTCTGGGTTGGCCCCTGGAGCCCGCAAGTCGCTCCTCCGACTGAAGAAGACCACGACGACAATCGCTCCTCCATCTTTCGGCGCCAATAAACATGTACAACCGCTCCTCCTCCTCCGACGCCTATATAGCCGACGACGACAGCCGCCCCCTCGACAGCCACCGATAAAAAGCCTAGAAATCCATCCCTGTAGTAGTTGGTCGGAGGAGCGGCTTGCAGGCCGTGCAGGTGTGGGATCGGAGGGGCGACTGTCATTTTGGTCTTCTACGATCGTGGCTGTCGTCGGAGGAGCGGTATTAATAGCGTTGGGATCAGATTAA

Protein sequence

MRSSCYYIFSDKGKAPINLFDSVAMASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIEKRQKSKNHENTHKILLPLRSCTSGLAPGARKSLLRLKKTTTTIAPPSFGANKHVQPLLLLRRLYSRRRQPPPRQPPIKSLEIHPCSSWSEERLAGRAGVGSEGRLSFWSSTIVAVVGGAVLIALGSD
Homology
[Close]
BLAST of Cp4.1LG00g02650 vs. TrEMBL
Match: C3SAD8_BRADI (Small nuclear ribonucleoprotein E OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 35

[Close]
BLAST of Cp4.1LG00g02650 vs. TrEMBL
Match: B9FZ34_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_26051 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 35

[Close]
BLAST of Cp4.1LG00g02650 vs. TrEMBL
Match: A2YR87_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27814 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 35

[Close]
BLAST of Cp4.1LG00g02650 vs. TrEMBL
Match: A0A0E0AQV1_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 35

[Close]
BLAST of Cp4.1LG00g02650 vs. TrEMBL
Match: A0A0D3GWD6_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 35

[Close]
BLAST of Cp4.1LG00g02650 vs. TAIR10
Match: AT2G18740.1 (AT2G18740.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 61.2 bits (147), Expect = 7.7e-10
Identity = 34/43 (79.07%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRI 59
          MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRI
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43

[Close]
BLAST of Cp4.1LG00g02650 vs. TAIR10
Match: AT4G30330.1 (AT4G30330.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 61.2 bits (147), Expect = 7.7e-10
Identity = 34/43 (79.07%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRI 59
          MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRI
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43

[Close]
BLAST of Cp4.1LG00g02650 vs. NCBI nr
Match: gi|125560150|gb|EAZ05598.1| (hypothetical protein OsI_27814 [Oryza sativa Indica Group])

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 35

[Close]
BLAST of Cp4.1LG00g02650 vs. NCBI nr
Match: gi|193848588|gb|ACF22772.1| (small nuclear ribonucleoprotein E [Brachypodium distachyon])

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 60
          MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 35

[Close]
BLAST of Cp4.1LG00g02650 vs. NCBI nr
Match: gi|475574993|gb|EMT17136.1| (hypothetical protein F775_32679 [Aegilops tauschii])

HSP 1 Score: 69.7 bits (169), Expect = 6.1e-09
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 60
          MASTKVQRIMTQPIKARIQIWLFEQKD+RIEGRII
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDMRIEGRII 35

[Close]
BLAST of Cp4.1LG00g02650 vs. NCBI nr
Match: gi|902187044|gb|KNA10835.1| (hypothetical protein SOVF_140750 isoform B [Spinacia oleracea])

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII 60
          MASTKVQRIMTQPIKARIQIWLFEQKD RIEGRII
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDARIEGRII 35

[Close]
BLAST of Cp4.1LG00g02650 vs. NCBI nr
Match: gi|116780366|gb|ABK21652.1| (unknown [Picea sitchensis])

HSP 1 Score: 67.4 bits (163), Expect = 3.0e-08
Identity = 40/66 (60.61%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 25 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII--------------EKRQKSKNHEN 77
          MA+T+VQRIMTQPIKARIQIWLFEQKDLRIEGRII              E   K K H+ 
Sbjct: 1  MATTRVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEISVKRKTHKP 60

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g02650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g02650 vs. TrEMBL
Match NameE-valueIdentityDescription
C3SAD8_BRADI2.5e-09100.00Small nuclear ribonucleoprotein E OS=Brachypodium distachyon PE=4 SV=1[more]
B9FZ34_ORYSJ2.5e-09100.00Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_26051 PE=4 SV=1[more]
A2YR87_ORYSI2.5e-09100.00Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27814 PE=4... [more]
A0A0E0AQV1_9ORYZ2.5e-09100.00Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1[more]
A0A0D3GWD6_9ORYZ2.5e-09100.00Uncharacterized protein OS=Oryza barthii PE=4 SV=1[more]
BLAST of Cp4.1LG00g02650 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18740.17.7e-1079.07 Small nuclear ribonucleoprotein family protein[more]
AT4G30330.17.7e-1079.07 Small nuclear ribonucleoprotein family protein[more]
BLAST of Cp4.1LG00g02650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|125560150|gb|EAZ05598.1|3.6e-09100.00hypothetical protein OsI_27814 [Oryza sativa Indica Group][more]
gi|193848588|gb|ACF22772.1|3.6e-09100.00small nuclear ribonucleoprotein E [Brachypodium distachyon][more]
gi|475574993|gb|EMT17136.1|6.1e-0997.14hypothetical protein F775_32679 [Aegilops tauschii][more]
gi|902187044|gb|KNA10835.1|1.4e-0897.14hypothetical protein SOVF_140750 isoform B [Spinacia oleracea][more]
gi|116780366|gb|ABK21652.1|3.0e-0860.61unknown [Picea sitchensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: INTERPRO
TermDefinition
IPR027078snRNP-E
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g02650.1Cp4.1LG00g02650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 25..59
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG00g02650CmaCh01G009460Cucurbita maxima (Rimu)cmacpeB457
Cp4.1LG00g02650Bhi09G001364Wax gourdcpewgoB0017
Cp4.1LG00g02650CsGy7G009170Cucumber (Gy14) v2cgybcpeB895
Cp4.1LG00g02650Carg25824Silver-seed gourdcarcpeB1484
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g02650Cucurbita maxima (Rimu)cmacpeB025
Cp4.1LG00g02650Cucurbita moschata (Rifu)cmocpeB418