CSPI07G09600 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G09600
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSmall nuclear ribonucleoprotein E
LocationChr7 : 7597045 .. 7600732 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGAATTTTGATAACTCTTGAAAACAGATAAAAAAGAAAAAAGAATTCACATCTAAACCGTATAAGCCTTCGTTGCCCTAATTGAAGTTCCATTCCCGTAGTTGGCGACTGTGAGGGCGTGAGCTGCTGCGTCTTGCGAGTGAAATTCAGAGAGACTTGGCTCTTCCAATTTCCTTTCTTCAGAAGTCCATTTCATTGAATCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAGTACTTTCTCATCTCAACTTCTTTTGCTTCATTTCAGCCTTGCTTTTCGTTTTTTTCTTACGTGTTTCTCTGATACATTTCTCTTTCTCTCTTTTATTGGATGTTGGTGCACTTCAGAACTTGATTTTCAGGTTCCTTCAAAGTGTAAGTTCCTTTTCATGATCATTTAGTTTATTTTCCATTTTGGGTATCGACAATTTTTTGTTGTTTTTTTTTTCTAAATAGTGAAATTGGCGTGTTCTTTCTCTGATGCTACTTACTTATGTCTTCACGTTGGAAATTTGTACAGAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATCATTGTAAGTTCTTTGGACTTGTGGGCTTTTGCTTTAAGAAACCATCGTGCCAGTAGTTAGTTTATCTATTCTTAATGTACATCTGGATGTTTAAAAAGCTTACTAGGATTTTAAGTATCCAAATATTGATTCTTCATCTGGGGTTTTAAGTTATTTTTTCGAACTGAGGTACATAGTTATGCTTTTACTTTTTTCACACTCAAAGAGATCATTCCAACATCGATACAAAAGGAAGATAGTTTAGTCCTGTTTGGTAATCATTTGATTTTTTGTTTTTTGGTTTTTGAAAATTTAACTCATAAACCCCTTCTTCGGTCGTTGGCAAATTCTGGGGCTTTCTCTGCTCATTTGACCTTCCACGAACCTACCAGTTACCCGAACTAGTCATAAGCTCAAAACCCTGCAGATGAAGTTGATATGATTATATGGAAGTTTTATATTCCAAAGAAGATAAAAGTCTTCCGCTGGATTCTCACGCATAATAATGTAAATACTTACGGAATCTTAGAAAGCATTGCTTGTCTCCATCGGTGTGCTTGCTCTGCCTAAAAGGATAGGGATCCAGTAACCACTTATTCCCATTTTTAGCTTCGGTAGAAGGGGTTGGTAGCAACTTCTTAAACTTTTTGTCTAAAACTTTTTCTTCTTGAGGAGATAGGTAGTTGGTTTTTAGAAGCTCTTTAAGGGTGGTCCTTTGAATGTAAAGCTGAAATCCTATGGGGTTGTGTAACTCAGGTTCTTTTATGAGAGCTGTGGAAAGAACTATTTGAACAACCTATGAAGATAAGTCCTGCTCCTTTGTTGATTTTTGTAACCTTGTACAAATTATTTTTTTTTGAAAAGGAGACAGCCTCTTTATTAATATAATAATAATGAGACTAATTAATTTTTTTTATGGACTCTTAGATACGAGGATCCTTGAAGATATGACTTTATTTATTTCTTTTTTTGTGATTAATACACCATTCTGTATCTTATAGAAAAAGCCAAGAATATGAGAACACATAAATATCTTCTTCCCTTAGTTGTGATTTGGTTTGGTTACACCGCCTGCCCAAGATCAACTTGCATTGCAGAAAAAGACAATCAATTTTTTTGTTTCCTTAATATAGTTGTCCACCATCTAGGTTGGTGGCTATCATTTTTGAAGCCATGGATTCTCAAGCCATTTTTGAAGAAATATTTGGCTCATGAACGTTAGTAGTAGTTGTACTGCAAGGGATAAAGGATTTGTGTGTCTAGGATCCCGACCTTGTGGACGGTGTCTCCTATAACACGTTTTACATTTGTTGCATCCCCCGCCGTTTAGTGAGTTTATGTTCTTTGACATCTGAAAATTTAAGATTCATAAAAAAGTAAGGTTCTTTATTTGGCAAGTTTTATATAAATGTGTGAACACATTGGACTGACACTTGAGGGGGATTCCTTTGCTAGTGGGCCATTTTGCTATATTCTTTGTTGGATGGCAGAGGAGGATTTGAATTACATTCTTTGGAGGTGTGAGTTTGTGTTTGCGTTTGGGACGTTTTTCTAGACTTTTGTTTTGATGCTTGCCTGTCCTAGGGGCACTAGAGATATGATCAGGGAGTTCTTCCACTAATTCAATGCCTCAAGATCTCTTCCATTATTCCACGACTCTTTGGTGTTCCTTTCCTCATAGTCTTAGGTAAAATCTCTTTTAATATTGACATCATCTACAGTACCAAAACATTATTATTACCGTTAATATTTTGGTAAGAAATTGTGTCATGGAGAGAAATGAAAGAATGTACAAGGACACACATAAAAACAAAAACCTAACAAAAAAGGGGCGCTAATTGAAAAGAACAAGATTGAACTCATAATTACGATAATGCCTTACAACTTGGGTGTTCTGATGCTCATGGGCTATAATTGTTAGTCTATTATCCAAGGGGCCATTTGAGGCACCAATTGGAAGTTGGTGGAGTGGGTTATTGTAGACCACTTCATGTTTGGTGCACCAACTATAATAATGGTGTGGAGAACTATATACAATCTACAATTAACTATAGTAAATACTATTTTAAAACCCTCTTTGCTACAATATTTACTATTTGTTACAATATTTGGTATTTTTCACTCATCTACTCTTTTCTTCTTTAGTATAGTGTTTACTATTTCCTACTTGAACAAAAATAGTTGACACCCTAAACACAAACTACTATAACTCAGACTATTATAACTCAAATGCGAACTATTATAACTCACTAACTATTTGATAATGACCAACTCAGGACCCCAAATGCTCCTTAAGTTTTTTCAATTTGAGAGTTTCTATAAGTTTGTGATGTGTCTTCTGAACATTATTAATTTTCTGGTGATGACTTCTGAGCTTTACTTCCCCAGGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGTTTGTCTCTTCATCATTTCCCTCTTGAAGCCAATACTTAAATTAGTTTAAGGGCAGAATAAAAACTCGTCTCATCTTTAACCTTTACAGGGAGGATACTGCTTAAAGGGGATAACATAACTCTGATGATGAACTCGTAAGTCCTTTGGAAGCTCTCTCTTTCAAAATTCATCAATACCGATGCATAATTGCTCTTTCTAAAAAAATTCATGAACTGTAAATGAATGCAAAATTGCAGGGGCAAGTGATGACCATTTTTGCACCAATATAAGAGATAGTGAAGTGTAGCCCCTTTCAATGGTGAAACTTGGAAGTCTTGCGTTGATCATAACGTAGAATGTTATTTTTACTGTCAATTGGTTGGCTGTTTTTGTACTTGCCTTAAAAGAAATTAAAATGCCAGCTTATATGAGAGATAGTCATCGCACTCAATTCATCCAGCTCTAATGTTGCTTAGATCATTGTATTTATTTTGCATATATCCTCAACTTTATGATCCATGATAGATATTGCCGTTTGCTGAGCTATATTGTGGATTAATTGGACATCAAGTAGAAATTGGTTCTTGTTTATCTTTATGTTAAAATTGGTTGATGAAAAATATAGATATAATAATTAATGATTCGGTAGAAGTTTAGGAAAGG

mRNA sequence

ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAAACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGGAGGATACTGCTTAAAGGGGATAACATAACTCTGATGATGAACTCGGGCAAGTGA

Coding sequence (CDS)

ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAAACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGGAGGATACTGCTTAAAGGGGATAACATAACTCTGATGATGAACTCGGGCAAGTGA
Homology
[Close]
BLAST of CSPI07G09600 vs. Swiss-Prot
Match: RUXE_MOUSE (Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 1 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of CSPI07G09600 vs. Swiss-Prot
Match: RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 1 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of CSPI07G09600 vs. Swiss-Prot
Match: RUXE_PIG (Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 1 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of CSPI07G09600 vs. Swiss-Prot
Match: RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 1 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of CSPI07G09600 vs. Swiss-Prot
Match: RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 1 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of CSPI07G09600 vs. TrEMBL
Match: A0A0A0K3R1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G206940 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRKTLGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of CSPI07G09600 vs. TrEMBL
Match: A0A0B0PLX9_GOSAR (Small nuclear ribonucleoprotein E OS=Gossypium arboreum GN=F383_06095 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRK+LGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKSLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of CSPI07G09600 vs. TrEMBL
Match: I1KBP3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G208600 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-40
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRKTLGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CSPI07G09600 vs. TrEMBL
Match: A0A0D2R526_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G272400 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRK+LGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKSLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of CSPI07G09600 vs. TrEMBL
Match: I3SF84_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-40
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRKTLGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CSPI07G09600 vs. TAIR10
Match: AT4G30330.1 (AT4G30330.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-40
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          ++KKK+RK LGRILLKGDNITLMMN+GK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88

[Close]
BLAST of CSPI07G09600 vs. TAIR10
Match: AT2G18740.1 (AT2G18740.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 160.6 bits (405), Expect = 4.4e-40
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          ++KK +RK LGRILLKGDNITLMMN+GK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CSPI07G09600 vs. NCBI nr
Match: gi|449444030|ref|XP_004139778.1| (PREDICTED: small nuclear ribonucleoprotein E [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRKTLGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of CSPI07G09600 vs. NCBI nr
Match: gi|1000942041|ref|XP_002531748.2| (PREDICTED: small nuclear ribonucleoprotein E [Ricinus communis])

HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKK+RKTLGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKTRKTLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of CSPI07G09600 vs. NCBI nr
Match: gi|823154395|ref|XP_012477072.1| (PREDICTED: small nuclear ribonucleoprotein E-like [Gossypium raimondii])

HSP 1 Score: 171.4 bits (433), Expect = 7.1e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRK+LGRILLKGDNITLMMNSGK
Sbjct: 61 NVKKKSRKSLGRILLKGDNITLMMNSGK 88

[Close]
BLAST of CSPI07G09600 vs. NCBI nr
Match: gi|356508935|ref|XP_003523208.1| (PREDICTED: small nuclear ribonucleoprotein E [Glycine max])

HSP 1 Score: 171.4 bits (433), Expect = 7.1e-40
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          NVKKKSRKTLGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]
BLAST of CSPI07G09600 vs. NCBI nr
Match: gi|356547766|ref|XP_003542280.1| (PREDICTED: small nuclear ribonucleoprotein E [Glycine max])

HSP 1 Score: 171.0 bits (432), Expect = 9.3e-40
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 89
          N+KKKSRKTLGRILLKGDNITLMMN+GK
Sbjct: 61 NIKKKSRKTLGRILLKGDNITLMMNTGK 88

The following BLAST results are available for this feature:
BLAST of CSPI07G09600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RUXE_MOUSE1.3e-2872.84Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=1 SV=1[more]
RUXE_BOVIN1.3e-2872.84Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1[more]
RUXE_PIG1.3e-2872.84Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1[more]
RUXE_CHICK1.3e-2872.84Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1[more]
RUXE_HUMAN1.3e-2872.84Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1[more]
BLAST of CSPI07G09600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3R1_CUCSA1.7e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G206940 PE=4 SV=1[more]
A0A0B0PLX9_GOSAR4.9e-4098.86Small nuclear ribonucleoprotein E OS=Gossypium arboreum GN=F383_06095 PE=4 SV=1[more]
I1KBP3_SOYBN4.9e-4097.73Uncharacterized protein OS=Glycine max GN=GLYMA_04G208600 PE=4 SV=1[more]
A0A0D2R526_GOSRA4.9e-4098.86Uncharacterized protein OS=Gossypium raimondii GN=B456_004G272400 PE=4 SV=1[more]
I3SF84_LOTJA4.9e-4097.73Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of CSPI07G09600 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G30330.11.2e-4092.05 Small nuclear ribonucleoprotein family protein[more]
AT2G18740.14.4e-4090.91 Small nuclear ribonucleoprotein family protein[more]
BLAST of CSPI07G09600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444030|ref|XP_004139778.1|2.4e-40100.00PREDICTED: small nuclear ribonucleoprotein E [Cucumis sativus][more]
gi|1000942041|ref|XP_002531748.2|5.4e-4098.86PREDICTED: small nuclear ribonucleoprotein E [Ricinus communis][more]
gi|823154395|ref|XP_012477072.1|7.1e-4098.86PREDICTED: small nuclear ribonucleoprotein E-like [Gossypium raimondii][more]
gi|356508935|ref|XP_003523208.1|7.1e-4097.73PREDICTED: small nuclear ribonucleoprotein E [Glycine max][more]
gi|356547766|ref|XP_003542280.1|9.3e-4096.59PREDICTED: small nuclear ribonucleoprotein E [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR027078snRNP-E
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G09600.1CSPI07G09600.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 20..83
score: 7.0
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 19..85
score: 1.7
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 12..84
score: 1.66
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 1..85
score: 4.0
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 9..85
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G09600Csa7G206940Cucumber (Chinese Long) v2cpicuB354
CSPI07G09600ClCG09G010690Watermelon (Charleston Gray)cpiwcgB545
CSPI07G09600CsaV3_7G021700Cucumber (Chinese Long) v3cpicucB414
CSPI07G09600Cla97C09G173410Watermelon (97103) v2cpiwmbB588
CSPI07G09600Bhi09G001364Wax gourdcpiwgoB705
CSPI07G09600Cucsa.236110Cucumber (Gy14) v1cgycpiB350
CSPI07G09600CmaCh01G009460Cucurbita maxima (Rimu)cmacpiB497
CSPI07G09600CmoCh01G009860Cucurbita moschata (Rifu)cmocpiB489
CSPI07G09600CsGy7G009170Cucumber (Gy14) v2cgybcpiB331
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G09600Bottle gourd (USVL1VR-Ls)cpilsiB524
CSPI07G09600Melon (DHL92) v3.6.1cpimedB527
CSPI07G09600Melon (DHL92) v3.5.1cpimeB542
CSPI07G09600Watermelon (97103) v1cpiwmB573