CmoCh01G009630 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA ATGGAGAAGAGCAAAACATTCCCCAAGTACTCGTCCTCCACTTCGGGCGAGTTCGGTTTCGAAACCCAGTCTAACTCGTACAATTTCAACGGCTCGGCTGAGAAGGGGAGCGGATTTTCGTCCTCTGCCGATCCCGAGCTTCAAAGGAAGAGAAGGATCGCCTCTTATAATGTTTTCAATATGGAAAACAAAGTGAAGTCCAGTGTAAAGAACAGCTTCAAATGGATCAAAACCAAGTTTAGTGACCGTCGCTACGGTTTGTGA
BLAST of CmoCh01G009630 vs. TrEMBL
Match: A0A0A0K8Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017090 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 8.8e-34 Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1
BLAST of CmoCh01G009630 vs. TrEMBL
Match: B9H7V5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21760g PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28 Identity = 65/87 (74.71%), Postives = 80/87 (91.95%), Query Frame = 1
BLAST of CmoCh01G009630 vs. TrEMBL
Match: A9P994_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06580g PE=2 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 5.5e-28 Identity = 64/87 (73.56%), Postives = 78/87 (89.66%), Query Frame = 1
BLAST of CmoCh01G009630 vs. TrEMBL
Match: W9R571_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023803 PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 1.0e-26 Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 1
BLAST of CmoCh01G009630 vs. TrEMBL
Match: A0A061FIS9_THECC (Mediator of RNA polymerase II transcription subunit 8 OS=Theobroma cacao GN=TCM_047078 PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 1.0e-26 Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1
BLAST of CmoCh01G009630 vs. TAIR10
Match: AT4G09890.1 (AT4G09890.1 Protein of unknown function (DUF3511)) HSP 1 Score: 77.4 bits (189), Expect = 4.8e-15 Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1
BLAST of CmoCh01G009630 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511)) HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08 Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 1
BLAST of CmoCh01G009630 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511)) HSP 1 Score: 51.2 bits (121), Expect = 3.7e-07 Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 1
BLAST of CmoCh01G009630 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511)) HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06 Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1
BLAST of CmoCh01G009630 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511)) HSP 1 Score: 48.1 bits (113), Expect = 3.1e-06 Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 1
BLAST of CmoCh01G009630 vs. NCBI nr
Match: gi|700190689|gb|KGN45893.1| (hypothetical protein Csa_6G017090 [Cucumis sativus]) HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33 Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1
BLAST of CmoCh01G009630 vs. NCBI nr
Match: gi|224082498|ref|XP_002306717.1| (hypothetical protein POPTR_0005s21760g [Populus trichocarpa]) HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28 Identity = 65/87 (74.71%), Postives = 80/87 (91.95%), Query Frame = 1
BLAST of CmoCh01G009630 vs. NCBI nr
Match: gi|224066609|ref|XP_002302161.1| (hypothetical protein POPTR_0002s06580g [Populus trichocarpa]) HSP 1 Score: 131.3 bits (329), Expect = 8.0e-28 Identity = 64/87 (73.56%), Postives = 78/87 (89.66%), Query Frame = 1
BLAST of CmoCh01G009630 vs. NCBI nr
Match: gi|703103187|ref|XP_010097663.1| (hypothetical protein L484_023803 [Morus notabilis]) HSP 1 Score: 127.1 bits (318), Expect = 1.5e-26 Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 1
BLAST of CmoCh01G009630 vs. NCBI nr
Match: gi|590601066|ref|XP_007019583.1| (Mediator of RNA polymerase II transcription subunit 8 [Theobroma cacao]) HSP 1 Score: 127.1 bits (318), Expect = 1.5e-26 Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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