CmaCh12G013350 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G013350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionOligouridylate-binding family protein
LocationCma_Chr12 : 10156927 .. 10157761 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTTCAGGTTACTTCAGTTGATCTCCACCGTTATTTTCACACCCTTGGTGCCGGGACAATTGAAGATGTTAGGGTACAACGGGACAAAGGTTTTGGGTTTGTGAGATATGGCACTCATGCTGAAGCAGCTTTAGCCATTCAAATGGGCAATGCTCGAGTTGTCTGTGGCAAACCAATTAAGGTACAACCTTAATGAAAAATGTACAATTTTGTCCTACTTGAATGTTAATCAATCATCATTTGATCTAGTTCTCAGAGCCAATATATATTTCAACTTGGTTATTTCGGATGGAAAATTTGTGTCGAGTGAAAGAGACTAACTGCGAAAATTAGTGCGGGTTAATGTTTTTGCGTGAGTGTTTAGGACTTGAATTTTCATTTATCCACTTAATGTTTTTGTAATCAAATGATGCAGTGTTCATGGGGTAGCAAGCCAACCCCGCCAGGGACTAATTCTGCCCCTCTTCCACCACCAAATGTGGGACACATGCCAGGTCTGTCTGCCGCCGACCTTGCTGCCTATGAACGGCAAATGGCGTTGAGCAAAATGGGTGCGGCACGAGCGCTAATGCATCCGCAGGCGGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATGGGAATTGGGATTGGTGGTGCTGGCACTAGTCAAACTTTATATGATAGTGGGTTCCAAAATATTGCAACCACCCAACAGCTGATGTATTACTAGGTGTATTTGAATTGCTGTATGATGCATGCTTGTAGTTGTTTTGTGGAACCAAAGAAAGTGTTACGTTCTGGGGATTGTGATGCAAGTACTATAGCCTGGTGGTGGGGGGGTT

mRNA sequence

ATGACTCTTCAGGTTACTTCAGTTGATCTCCACCGTTATTTTCACACCCTTGGTGCCGGGACAATTGAAGATGTTAGGGTACAACGGGACAAAGGTTTTGGGTTTGTGAGATATGGCACTCATGCTGAAGCAGCTTTAGCCATTCAAATGGGCAATGCTCGAGTTGTCTGTGGCAAACCAATTAAGTGTTCATGGGGTAGCAAGCCAACCCCGCCAGGGACTAATTCTGCCCCTCTTCCACCACCAAATGTGGGACACATGCCAGGTCTGTCTGCCGCCGACCTTGCTGCCTATGAACGGCAAATGGCGTTGAGCAAAATGGGTGCGGCACGAGCGCTAATGCATCCGCAGGCGGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATGGGAATTGGGATTGGTGGTGCTGGCACTAGTCAAACTTTATATGATAGTGGGTTCCAAAATATTGCAACCACCCAACAGCTGATGTATTACTAGGTGTATTTGAATTGCTGTATGATGCATGCTTGTAGTTGTTTTGTGGAACCAAAGAAAGTGTTACGTTCTGGGGATTGTGATGCAAGTACTATAGCCTGGTGGTGGGGGGGTT

Coding sequence (CDS)

ATGACTCTTCAGGTTACTTCAGTTGATCTCCACCGTTATTTTCACACCCTTGGTGCCGGGACAATTGAAGATGTTAGGGTACAACGGGACAAAGGTTTTGGGTTTGTGAGATATGGCACTCATGCTGAAGCAGCTTTAGCCATTCAAATGGGCAATGCTCGAGTTGTCTGTGGCAAACCAATTAAGTGTTCATGGGGTAGCAAGCCAACCCCGCCAGGGACTAATTCTGCCCCTCTTCCACCACCAAATGTGGGACACATGCCAGGTCTGTCTGCCGCCGACCTTGCTGCCTATGAACGGCAAATGGCGTTGAGCAAAATGGGTGCGGCACGAGCGCTAATGCATCCGCAGGCGGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATGGGAATTGGGATTGGTGGTGCTGGCACTAGTCAAACTTTATATGATAGTGGGTTCCAAAATATTGCAACCACCCAACAGCTGATGTATTACTAG

Protein sequence

MTLQVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY
Homology
[Close]
BLAST of CmaCh12G013350 vs. Swiss-Prot
Match: UBP1C_ARATH (Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-49
Identity = 104/160 (65.00%), Postives = 118/160 (73.75%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIK 63
           +VT +DLHRYFH LGAG IE+VRVQRDKGFGFVRY TH EAALAIQMGN +  +  + IK
Sbjct: 275 EVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIK 334

Query: 64  CSWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHA 123
           CSWG+KPTPPGT S PLPPP    +PGLSAADL  YERQ+ALSKM +  ALMH Q  QH 
Sbjct: 335 CSWGNKPTPPGTASNPLPPPAPAPVPGLSAADLLNYERQLALSKMASVNALMHQQG-QHP 394

Query: 124 LKQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
           L+QA        GI  AG +  +YD GFQN+A  QQLMYY
Sbjct: 395 LRQAH-------GINAAGATAAMYDGGFQNVAAAQQLMYY 426

[Close]
BLAST of CmaCh12G013350 vs. Swiss-Prot
Match: UBP1_NICPL (Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia GN=UBP1 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 8.9e-49
Identity = 99/159 (62.26%), Postives = 119/159 (74.84%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHR+FH LGAG IEDVR+QRDKGFGFVRY +HAEAA AIQ+GNAR++ GKP+KC
Sbjct: 265 EVTSVDLHRHFHALGAGVIEDVRIQRDKGFGFVRYSSHAEAARAIQLGNARLLFGKPVKC 324

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHAL 123
           SWGSKPTPPG++S PLPPP +G +PGLSA DLAAY+RQ+AL+KM  A+A M PQ      
Sbjct: 325 SWGSKPTPPGSSSNPLPPPAIGQIPGLSAMDLAAYQRQLALAKMAGAQAFMQPQ------ 384

Query: 124 KQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
                  G  IG  G G    +YD G+  IA+TQ  MY+
Sbjct: 385 -------GQRIGAPGQG----IYDGGYGGIASTQPPMYF 406

[Close]
BLAST of CmaCh12G013350 vs. Swiss-Prot
Match: UBP1B_ARATH (Oligouridylate-binding protein 1B OS=Arabidopsis thaliana GN=UBP1B PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-46
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIK 63
           +V+ VDLHR+FH+LGAG IE+VRVQRDKGFGFVRY TH EAALAIQMGN    + G+ +K
Sbjct: 270 EVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMK 329

Query: 64  CSWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHA 123
           CSWGSKPTP GT S PLPPP    +PG SA+DL AYERQ+A+SKM     +MH    QHA
Sbjct: 330 CSWGSKPTPAGTASNPLPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHA 389

Query: 124 LKQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
            KQAAM        G  G++Q +YD G+QN    QQLMYY
Sbjct: 390 FKQAAM--------GATGSNQAIYDGGYQN---AQQLMYY 418

[Close]
BLAST of CmaCh12G013350 vs. Swiss-Prot
Match: UBP1A_ARATH (Oligouridylate-binding protein 1A OS=Arabidopsis thaliana GN=UBP1A PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.9e-44
Identity = 98/161 (60.87%), Postives = 118/161 (73.29%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIK 63
           +VT +DLHR F+TLGAG IE+VRVQRDKGFGFVRY TH EAALAIQMGNA+  +  + I+
Sbjct: 279 EVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIR 338

Query: 64  CSWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHA 123
           CSWG+KPTP GT S PLPPP    +P LSA DL AYERQ+AL+KM       HPQA QH+
Sbjct: 339 CSWGNKPTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLALAKM-------HPQA-QHS 398

Query: 124 LKQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATT-QQLMYY 163
           L+QA      G+G+  AG +  +YD G+QN+A   QQLMYY
Sbjct: 399 LRQA------GLGVNVAGGTAAMYDGGYQNVAAAHQQLMYY 425

[Close]
BLAST of CmaCh12G013350 vs. TrEMBL
Match: A0A0A0LFH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000020 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.4e-77
Identity = 146/159 (91.82%), Postives = 153/159 (96.23%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHRYFH LGAGTIEDVRVQRDKGFGFVRY T+AEAALAIQ GNARVVCGKPIKC
Sbjct: 262 EVTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTNAEAALAIQTGNARVVCGKPIKC 321

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHAL 123
           SWGSKPTPPGTNS PLPPPNVGH+ GLSAADLA+YERQMALSKMGAA+ALMHPQAAQHAL
Sbjct: 322 SWGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHAL 381

Query: 124 KQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
           KQAAMGMGMGIG+GGAGTSQT+YD GFQNIATTQQLMYY
Sbjct: 382 KQAAMGMGMGIGMGGAGTSQTIYDGGFQNIATTQQLMYY 420

[Close]
BLAST of CmaCh12G013350 vs. TrEMBL
Match: V5M0B6_VITVI (TIAR-like protein OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.0e-64
Identity = 127/159 (79.87%), Postives = 136/159 (85.53%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHR+FH LGAG IEDVRVQRDKGFGFVRY THAEAALAIQMGNAR++CGKPIKC
Sbjct: 270 EVTSVDLHRHFHALGAGAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKC 329

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHAL 123
           SWGSKPTP GT+S PLPPP   HMPG+SAAD AAYERQMALSKMG A+ LMHPQ AQHAL
Sbjct: 330 SWGSKPTPAGTSSTPLPPPAAPHMPGISAADFAAYERQMALSKMGGAQGLMHPQ-AQHAL 389

Query: 124 KQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
           KQ AMGMG G      G+SQ +YD GFQN ATTQQLMYY
Sbjct: 390 KQTAMGMGAG------GSSQAIYDGGFQNAATTQQLMYY 421

[Close]
BLAST of CmaCh12G013350 vs. TrEMBL
Match: F6HGN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00700 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.0e-64
Identity = 127/159 (79.87%), Postives = 136/159 (85.53%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHR+FH LGAG IEDVRVQRDKGFGFVRY THAEAALAIQMGNAR++CGKPIKC
Sbjct: 270 EVTSVDLHRHFHALGAGAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKC 329

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHAL 123
           SWGSKPTP GT+S PLPPP   HMPG+SAAD AAYERQMALSKMG A+ LMHPQ AQHAL
Sbjct: 330 SWGSKPTPAGTSSTPLPPPAAPHMPGISAADFAAYERQMALSKMGGAQGLMHPQ-AQHAL 389

Query: 124 KQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
           KQ AMGMG G      G+SQ +YD GFQN ATTQQLMYY
Sbjct: 390 KQTAMGMGAG------GSSQAIYDGGFQNAATTQQLMYY 421

[Close]
BLAST of CmaCh12G013350 vs. TrEMBL
Match: A0A061GSY2_THECC (Oligouridylate binding protein 1B isoform 1 OS=Theobroma cacao GN=TCM_037492 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.2e-62
Identity = 124/161 (77.02%), Postives = 138/161 (85.71%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHR+FH LGAGTIEDVR+QRDKGFGFVRY +HAEAALAIQ+GNAR++CGKPIKC
Sbjct: 262 EVTSVDLHRHFHVLGAGTIEDVRLQRDKGFGFVRYSSHAEAALAIQVGNARILCGKPIKC 321

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARA--LMHPQAAQH 123
           SWGSKPTPPGT+S PLPPP   HMPG SAADLAAYERQMALSK G A+A  +MHPQ +QH
Sbjct: 322 SWGSKPTPPGTSSVPLPPPAAAHMPGFSAADLAAYERQMALSKYGGAQAMGMMHPQ-SQH 381

Query: 124 ALKQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
            LKQAA+GMG       AG SQ +YD GFQN+ATTQQLMYY
Sbjct: 382 VLKQAALGMGT------AGASQAIYDGGFQNVATTQQLMYY 415

[Close]
BLAST of CmaCh12G013350 vs. TrEMBL
Match: A0A061GK43_THECC (Oligouridylate binding protein 1B isoform 2 OS=Theobroma cacao GN=TCM_037492 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.2e-62
Identity = 124/161 (77.02%), Postives = 138/161 (85.71%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHR+FH LGAGTIEDVR+QRDKGFGFVRY +HAEAALAIQ+GNAR++CGKPIKC
Sbjct: 263 EVTSVDLHRHFHVLGAGTIEDVRLQRDKGFGFVRYSSHAEAALAIQVGNARILCGKPIKC 322

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARA--LMHPQAAQH 123
           SWGSKPTPPGT+S PLPPP   HMPG SAADLAAYERQMALSK G A+A  +MHPQ +QH
Sbjct: 323 SWGSKPTPPGTSSVPLPPPAAAHMPGFSAADLAAYERQMALSKYGGAQAMGMMHPQ-SQH 382

Query: 124 ALKQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
            LKQAA+GMG       AG SQ +YD GFQN+ATTQQLMYY
Sbjct: 383 VLKQAALGMGT------AGASQAIYDGGFQNVATTQQLMYY 416

[Close]
BLAST of CmaCh12G013350 vs. TAIR10
Match: AT3G14100.1 (AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 197.2 bits (500), Expect = 7.8e-51
Identity = 104/160 (65.00%), Postives = 118/160 (73.75%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIK 63
           +VT +DLHRYFH LGAG IE+VRVQRDKGFGFVRY TH EAALAIQMGN +  +  + IK
Sbjct: 275 EVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIK 334

Query: 64  CSWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHA 123
           CSWG+KPTPPGT S PLPPP    +PGLSAADL  YERQ+ALSKM +  ALMH Q  QH 
Sbjct: 335 CSWGNKPTPPGTASNPLPPPAPAPVPGLSAADLLNYERQLALSKMASVNALMHQQG-QHP 394

Query: 124 LKQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
           L+QA        GI  AG +  +YD GFQN+A  QQLMYY
Sbjct: 395 LRQAH-------GINAAGATAAMYDGGFQNVAAAQQLMYY 426

[Close]
BLAST of CmaCh12G013350 vs. TAIR10
Match: AT1G17370.1 (AT1G17370.1 oligouridylate binding protein 1B)

HSP 1 Score: 187.6 bits (475), Expect = 6.1e-48
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIK 63
           +V+ VDLHR+FH+LGAG IE+VRVQRDKGFGFVRY TH EAALAIQMGN    + G+ +K
Sbjct: 270 EVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMK 329

Query: 64  CSWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHA 123
           CSWGSKPTP GT S PLPPP    +PG SA+DL AYERQ+A+SKM     +MH    QHA
Sbjct: 330 CSWGSKPTPAGTASNPLPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHA 389

Query: 124 LKQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
            KQAAM        G  G++Q +YD G+QN    QQLMYY
Sbjct: 390 FKQAAM--------GATGSNQAIYDGGYQN---AQQLMYY 418

[Close]
BLAST of CmaCh12G013350 vs. TAIR10
Match: AT1G54080.2 (AT1G54080.2 oligouridylate-binding protein 1A)

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-45
Identity = 98/161 (60.87%), Postives = 118/161 (73.29%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIK 63
           +VT +DLHR F+TLGAG IE+VRVQRDKGFGFVRY TH EAALAIQMGNA+  +  + I+
Sbjct: 283 EVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIR 342

Query: 64  CSWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHA 123
           CSWG+KPTP GT S PLPPP    +P LSA DL AYERQ+AL+KM       HPQA QH+
Sbjct: 343 CSWGNKPTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLALAKM-------HPQA-QHS 402

Query: 124 LKQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATT-QQLMYY 163
           L+QA      G+G+  AG +  +YD G+QN+A   QQLMYY
Sbjct: 403 LRQA------GLGVNVAGGTAAMYDGGYQNVAAAHQQLMYY 429

[Close]
BLAST of CmaCh12G013350 vs. NCBI nr
Match: gi|659071491|ref|XP_008460071.1| (PREDICTED: oligouridylate-binding protein 1-like [Cucumis melo])

HSP 1 Score: 302.0 bits (772), Expect = 6.3e-79
Identity = 148/159 (93.08%), Postives = 153/159 (96.23%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHRYFH LGAGTIEDVRVQRDKGFGFVRY THAEAALAIQ GNARVVCGKPIKC
Sbjct: 262 EVTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQTGNARVVCGKPIKC 321

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHAL 123
           SWGSKPTPPGTNS PLPPPNVGHMPGLSAADLA+YERQMA SKMGAA+ALMHPQAAQHAL
Sbjct: 322 SWGSKPTPPGTNSTPLPPPNVGHMPGLSAADLASYERQMAFSKMGAAQALMHPQAAQHAL 381

Query: 124 KQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
           KQAAMGMGMGIG+GGAGTSQT+YD GFQNIATTQQLMYY
Sbjct: 382 KQAAMGMGMGIGMGGAGTSQTIYDGGFQNIATTQQLMYY 420

[Close]
BLAST of CmaCh12G013350 vs. NCBI nr
Match: gi|700205374|gb|KGN60493.1| (hypothetical protein Csa_2G000020 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 3.5e-77
Identity = 146/159 (91.82%), Postives = 153/159 (96.23%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHRYFH LGAGTIEDVRVQRDKGFGFVRY T+AEAALAIQ GNARVVCGKPIKC
Sbjct: 262 EVTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTNAEAALAIQTGNARVVCGKPIKC 321

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHAL 123
           SWGSKPTPPGTNS PLPPPNVGH+ GLSAADLA+YERQMALSKMGAA+ALMHPQAAQHAL
Sbjct: 322 SWGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHAL 381

Query: 124 KQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
           KQAAMGMGMGIG+GGAGTSQT+YD GFQNIATTQQLMYY
Sbjct: 382 KQAAMGMGMGIGMGGAGTSQTIYDGGFQNIATTQQLMYY 420

[Close]
BLAST of CmaCh12G013350 vs. NCBI nr
Match: gi|778665474|ref|XP_011648572.1| (PREDICTED: auxin response factor 19 isoform X2 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 3.5e-77
Identity = 146/159 (91.82%), Postives = 153/159 (96.23%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHRYFH LGAGTIEDVRVQRDKGFGFVRY T+AEAALAIQ GNARVVCGKPIKC
Sbjct: 786 EVTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTNAEAALAIQTGNARVVCGKPIKC 845

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHAL 123
           SWGSKPTPPGTNS PLPPPNVGH+ GLSAADLA+YERQMALSKMGAA+ALMHPQAAQHAL
Sbjct: 846 SWGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHAL 905

Query: 124 KQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
           KQAAMGMGMGIG+GGAGTSQT+YD GFQNIATTQQLMYY
Sbjct: 906 KQAAMGMGMGIGMGGAGTSQTIYDGGFQNIATTQQLMYY 944

[Close]
BLAST of CmaCh12G013350 vs. NCBI nr
Match: gi|558520557|gb|AHA61391.1| (TIAR-like protein [Vitis vinifera])

HSP 1 Score: 252.3 bits (643), Expect = 5.8e-64
Identity = 127/159 (79.87%), Postives = 136/159 (85.53%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHR+FH LGAG IEDVRVQRDKGFGFVRY THAEAALAIQMGNAR++CGKPIKC
Sbjct: 270 EVTSVDLHRHFHALGAGAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKC 329

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHAL 123
           SWGSKPTP GT+S PLPPP   HMPG+SAAD AAYERQMALSKMG A+ LMHPQ AQHAL
Sbjct: 330 SWGSKPTPAGTSSTPLPPPAAPHMPGISAADFAAYERQMALSKMGGAQGLMHPQ-AQHAL 389

Query: 124 KQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
           KQ AMGMG G      G+SQ +YD GFQN ATTQQLMYY
Sbjct: 390 KQTAMGMGAG------GSSQAIYDGGFQNAATTQQLMYY 421

[Close]
BLAST of CmaCh12G013350 vs. NCBI nr
Match: gi|731406257|ref|XP_010656098.1| (PREDICTED: oligouridylate-binding protein 1 isoform X2 [Vitis vinifera])

HSP 1 Score: 252.3 bits (643), Expect = 5.8e-64
Identity = 127/159 (79.87%), Postives = 136/159 (85.53%), Query Frame = 1 

Query: 4   QVTSVDLHRYFHTLGAGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKC 63
           +VTSVDLHR+FH LGAG IEDVRVQRDKGFGFVRY THAEAALAIQMGNAR++CGKPIKC
Sbjct: 269 EVTSVDLHRHFHALGAGAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKC 328

Query: 64  SWGSKPTPPGTNSAPLPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHAL 123
           SWGSKPTP GT+S PLPPP   HMPG+SAAD AAYERQMALSKMG A+ LMHPQ AQHAL
Sbjct: 329 SWGSKPTPAGTSSTPLPPPAAPHMPGISAADFAAYERQMALSKMGGAQGLMHPQ-AQHAL 388

Query: 124 KQAAMGMGMGIGIGGAGTSQTLYDSGFQNIATTQQLMYY 163
           KQ AMGMG G      G+SQ +YD GFQN ATTQQLMYY
Sbjct: 389 KQTAMGMGAG------GSSQAIYDGGFQNAATTQQLMYY 420

The following BLAST results are available for this feature:
BLAST of CmaCh12G013350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UBP1C_ARATH1.4e-4965.00Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1[more]
UBP1_NICPL8.9e-4962.26Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia GN=UBP1 PE=2 SV=1[more]
UBP1B_ARATH1.1e-4661.25Oligouridylate-binding protein 1B OS=Arabidopsis thaliana GN=UBP1B PE=1 SV=1[more]
UBP1A_ARATH3.9e-4460.87Oligouridylate-binding protein 1A OS=Arabidopsis thaliana GN=UBP1A PE=1 SV=1[more]
BLAST of CmaCh12G013350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFH4_CUCSA2.4e-7791.82Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000020 PE=4 SV=1[more]
V5M0B6_VITVI4.0e-6479.87TIAR-like protein OS=Vitis vinifera PE=2 SV=1[more]
F6HGN2_VITVI4.0e-6479.87Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00700 PE=4 SV=... [more]
A0A061GSY2_THECC2.2e-6277.02Oligouridylate binding protein 1B isoform 1 OS=Theobroma cacao GN=TCM_037492 PE=... [more]
A0A061GK43_THECC2.2e-6277.02Oligouridylate binding protein 1B isoform 2 OS=Theobroma cacao GN=TCM_037492 PE=... [more]
BLAST of CmaCh12G013350 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G14100.17.8e-5165.00 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G17370.16.1e-4861.25 oligouridylate binding protein 1B[more]
AT1G54080.22.2e-4560.87 oligouridylate-binding protein 1A[more]
BLAST of CmaCh12G013350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071491|ref|XP_008460071.1|6.3e-7993.08PREDICTED: oligouridylate-binding protein 1-like [Cucumis melo][more]
gi|700205374|gb|KGN60493.1|3.5e-7791.82hypothetical protein Csa_2G000020 [Cucumis sativus][more]
gi|778665474|ref|XP_011648572.1|3.5e-7791.82PREDICTED: auxin response factor 19 isoform X2 [Cucumis sativus][more]
gi|558520557|gb|AHA61391.1|5.8e-6479.87TIAR-like protein [Vitis vinifera][more]
gi|731406257|ref|XP_010656098.1|5.8e-6479.87PREDICTED: oligouridylate-binding protein 1 isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G013350.1CmaCh12G013350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 5..62
score: 5.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 2..64
score: 6.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 1..68
score: 11
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 4..70
score: 4.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 4..75
score: 4.89

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G013350CmoCh12G013650Cucurbita moschata (Rifu)cmacmoB177
CmaCh12G013350CsGy2G000020Cucumber (Gy14) v2cgybcmaB185
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G013350Cucumber (Chinese Long) v3cmacucB0202
CmaCh12G013350Watermelon (97103) v2cmawmbB171
CmaCh12G013350Wax gourdcmawgoB0190
CmaCh12G013350Cucurbita maxima (Rimu)cmacmaB086
CmaCh12G013350Cucurbita maxima (Rimu)cmacmaB122
CmaCh12G013350Cucurbita moschata (Rifu)cmacmoB171
CmaCh12G013350Cucurbita moschata (Rifu)cmacmoB190
CmaCh12G013350Melon (DHL92) v3.5.1cmameB172
CmaCh12G013350Watermelon (Charleston Gray)cmawcgB150
CmaCh12G013350Watermelon (Charleston Gray)cmawcgB158
CmaCh12G013350Watermelon (97103) v1cmawmB157
CmaCh12G013350Watermelon (97103) v1cmawmB172
CmaCh12G013350Cucurbita pepo (Zucchini)cmacpeB171
CmaCh12G013350Cucurbita pepo (Zucchini)cmacpeB184
CmaCh12G013350Cucurbita pepo (Zucchini)cmacpeB204
CmaCh12G013350Bottle gourd (USVL1VR-Ls)cmalsiB161
CmaCh12G013350Silver-seed gourdcarcmaB0121
CmaCh12G013350Silver-seed gourdcarcmaB0797
CmaCh12G013350Silver-seed gourdcarcmaB1236