CsGy2G000020 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G000020
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	oligouridylate-binding protein 1-like
Location	Chr2 : 27702 .. 30906 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATCAGGTTTCGGGTTATTTTATTAACTGGATTTCATTATTGTGCACTTTTGTGTTAAAAGAGTCGTGAAGATTATTTCTTCATGCTCACTTTTTAGGACATAAGTACTAGTATTGTTGTTTCTTTTTATCAGAAACTGTTCTATTTATTATTATTGTTTTTCTTTTTCTGTTTTGACGATAAAGGAAAGTGGCTTGGGAGTCGACAGATTAGGTGTAATTGGGCCACAAAAGGTGCTAATTCTGGCGATGACAAACAGAGTTCGGATTCCAGAAGTGTTGTAGAGCTTACATCTGGAACTTCAGGTATTTCATTGAACGATATTTGACTGAGATTTTCAGCTTTATTATCCTTCTTTTATTTACCGATTTAAACTCTTATATCGATTGTTGCAAATCTTTCAAGGTTTCTACACGCATGATAGTTTTTGGCTGTTCCACAGAGAGCATTTTCTCCTTGTTGATCTATCTTTACACTCATGACCAAAGACCTGTTTCTTGCCTGTTCTCCTGTTATATCTATATTCTGCACGTGCATTAGAACTGTGGCCAATGTGTTTAACTAAACCTACATTTTTGCTGAATCTTGTTTAATTAGAGGCATATGTTTTTGAATGTATTAACCTTGAGGTCTGCATCTTGCTTATTTATATTGAATAATCATTCCAAAATCTGCTTAGACATAATTATTCTTGGATAGGTTCATATTTCTTGTTAAAAAGAGTTGGCAAATATAGTACAGGGAAAGAATTTCATTTGTGTTTCTGAATTTTGTAATCCCAGGTTAAACAATTTTAACCTATGATTTTTAACCATCTCCAAATTTTAATTACATTCTGAATATCTTAATGACCAATGTATTTGGTTCTGATCTCTAATTTTGAATAGTTCAAAATTGATTAAAATTTCTGGTTAAATTTTTAGACAGTTCAACACATGTAGTCCTTTTAGGGGTTGAAGAATTGAATTTTAACCTCTTGGAGGAAGTAGGGATGTGTTTATTATTGAGCTATGGTGATATGAAAACTATAGGATTTGAAAATTAGGAACCCAATTGTTGAATATCTAATATCAAATTCTAAGACCCCAATCAATTTGACGACAATCCAAAATTATCTCTTGATCGAAGATCAAGAGATAAGTAGTTTTTTACTTCAAGTTCGATCACTACACAAGCAAAATGGTCAGACTTACATAAATTTTCTTGGCATGCAACCCTGGTTCAAGATTTACAAAAGATGACAATTAGAATCTATCATCTACCAGGAAGTTCTCATTCAAACAAAACTCAAATTCAAACACCCAAAAGTTAAGTATTGCTTTCCCCTTCTTCCCCTAAAACCTTCCTACTTGACTAGAGGGATTTAAAAAGTTCACTCTACCCATAACTCAAAATACCAAAAACCCAAAGAAAACATACAAGGGTCTAATAACAAAAGTATAAAAAATAAGGTATGGTTTACAACATTTTTTAAAAAATAAACACGGATTAAGATTGAACACTTCAATCGATTTCATCTTGTAGCATCAACCGAAACCAATTGTAGAGCTTGTTAGATGTTGGTGCTTGAGTACTCTTAATTGAGTCCATCTCTATTTGTATGCAATAATACAACGCTAAACTGTAGCTTATTGGCTCTTGAGTAACATGAGGACAATTTGGTACATATTATATAGTCATGTTGGTTATTTATCTTTTCTTTTTTTGTTATTGATGTCTAATATAGTTATTTTATCCGGAATAGCCATCGGTGATTGTTTTTACTTGAGCTTTCTGTTCTCTTTATTTTTTCTGCAAACTGCAGCCCTCTGATTAGACATTTATAATTTTCCCTTATTAGTTTTACTTTCACAACATTGTCATGGCTGTCTTTGCAGATGGTGGTCAGGAGAAATCCAATGAGGACGCACCTGAGAACAATCCTCAATACACAACCGTCTATGTGGGAAATCTTGCTCCCGAGGCAAGGGAACTCTTTCGATGATATTATAGTATGCATAGTAGTTGTTGAACCTGCAAATGGAGGGCTCTGCCATCTCTAAAGGCATAAGCATGAATGGGGATGGGTTTCTAAAATTTATCTAAGAAAGTTAATGCTTTTTGTCAGATCTTTTTTTTCTTTCATTTTTCTACATCAAAGCGTTGTTTTCATCATATATGATCTCACACACACACACGTAATGTGTAGGACAACCAATCCTTCCTTTTTATGACTAAAACTTGTGTTAAAAGCGTGTCAAGTTTGTCATGTTATAGCTTGATTCTTTTAGGATTGCATCATTTTCTTTGTTTATACTCTGCAGGTTACTTCAGTTGATCTCCACCGTTATTTCCATGCCCTTGGTGCCGGGACAATTGAAGATGTTAGGGTACAACGGGATAAAGGTTTTGGGTTTGTGAGATATAGCACTAACGCTGAAGCAGCTTTAGCCATCCAAACGGGCAATGCTAGAGTTGTCTGTGGCAAACCAATTAAGGTGCAACCTTTTTCCTATATATTACTCATCATTTGATTTAGTTCCCAGTGCCAACATGTATTTCAGCTTGGTTATTTTGGGTGGACAATTTAGGGTCACGTGGAGAGACTTAACTGAATTTTATGGGTTTAGTAAATGTGGGTTCACTGAGAAAAATTATTTTGCGTCCCTATAGGACTTGGATTTTCATCTATTCACTGAAATCTTTTTGTAATCAAATGCTGTAGTGTTCATGGGGTAGCAAGCCCACCCCGCCAGGGACAAATTCTACCCCTCTTCCTCCACCGAATGTGGGACACATATCAGGTTTGTCTGCAGCTGATCTTGCGTCCTATGAACGGCAAATGGCATTGAGCAAAATGGGTGCGGCACAAGCGCTAATGCATCCACAAGCGGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATGGGAATTGGGATGGGTGGTGCTGGCACAAGTCAAACTATATATGATGGCGGGTTCCAAAATATTGCAACCACCCAACAGCTCATGTATTACTAGGTATTTGAACTGCTCTAGTGTATGATGCTTGTAGTTCATTGTGGAACTAAAAAAAAATAGTGTTACATGTTTTGGGGATTGTGACCCAAGTACGATCTTGAACCTGCTGCGTTTGCCAATGTAGTGGTTAGCCCGGGGGGAGAAGGTATTGCAGAGATTTTAATTTGTTTACTTTTAATGGTTTAGTTTGTAG

mRNA sequence

ATGCATATCAGGTTTCGGGTTACTTCAGTTGATCTCCACCGTTATTTCCATGCCCTTGGTGCCGGGACAATTGAAGATGTTAGGTGTTCATGGGGTAGCAAGCCCACCCCGCCAGGGACAAATTCTACCCCTCTTCCTCCACCGAATGTGGGACACATATCAGGTTTGTCTGCAGCTGATCTTGCGTCCTATGAACGGCAAATGGCATTGAGCAAAATGGGTGCGGCACAAGCGCTAATGCATCCACAAGCGGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATGGGAATTGGGATGGGTGGTGCTGGCACAAGTCAAACTATATATGATGGCGGGTTCCAAAATATTGCAACCACCCAACAGCTCATTTTGTAG

Coding sequence (CDS)

ATGCATATCAGGTTTCGGGTTACTTCAGTTGATCTCCACCGTTATTTCCATGCCCTTGGTGCCGGGACAATTGAAGATGTTAGGTGTTCATGGGGTAGCAAGCCCACCCCGCCAGGGACAAATTCTACCCCTCTTCCTCCACCGAATGTGGGACACATATCAGGTTTGTCTGCAGCTGATCTTGCGTCCTATGAACGGCAAATGGCATTGAGCAAAATGGGTGCGGCACAAGCGCTAATGCATCCACAAGCGGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATGGGAATTGGGATGGGTGGTGCTGGCACAAGTCAAACTATATATGATGGCGGGTTCCAAAATATTGCAACCACCCAACAGCTCATTTTGTAG

Protein sequence

MHIRFRVTSVDLHRYFHALGAGTIEDVRCSWGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALKQAAMGMGMGIGMGGAGTSQTIYDGGFQNIATTQQLIL

Homology

[Close]

BLAST of CsGy2G000020 vs. NCBI nr
Match: KGN60493.1 (hypothetical protein Csa_2G000020 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 119/156 (76.28%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHRYFHALGAGTIEDVR                                    CS
Sbjct: 263 VTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTNAEAALAIQTGNARVVCGKPIKCS 322

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 126
           WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK
Sbjct: 323 WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 382

[Close]

BLAST of CsGy2G000020 vs. NCBI nr
Match: XP_011648572.1 (PREDICTED: auxin response factor 19 isoform X2 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 119/156 (76.28%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHRYFHALGAGTIEDVR                                    CS
Sbjct: 787 VTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTNAEAALAIQTGNARVVCGKPIKCS 846

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 126
           WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK
Sbjct: 847 WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 906

[Close]

BLAST of CsGy2G000020 vs. NCBI nr
Match: XP_008460071.1 (PREDICTED: oligouridylate-binding protein 1-like [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 4.5e-44
Identity = 116/156 (74.36%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHRYFHALGAGTIEDVR                                    CS
Sbjct: 263 VTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQTGNARVVCGKPIKCS 322

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 126
           WGSKPTPPGTNSTPLPPPNVGH+ GLSAADLASYERQMA SKMGAAQALMHPQAAQHALK
Sbjct: 323 WGSKPTPPGTNSTPLPPPNVGHMPGLSAADLASYERQMAFSKMGAAQALMHPQAAQHALK 382

[Close]

BLAST of CsGy2G000020 vs. NCBI nr
Match: XP_022154628.1 (oligouridylate-binding protein 1-like isoform X3 [Momordica charantia])

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 115/156 (73.72%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHRYFHALGAGTIEDVR                                    CS
Sbjct: 254 VTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLCGKPIKCS 313

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 126
           WGSKPTPPGTNSTPLPPPNVGH+ GLSAADLA+YERQM LSKMGAAQALMHPQAAQHALK
Sbjct: 314 WGSKPTPPGTNSTPLPPPNVGHMPGLSAADLAAYERQMTLSKMGAAQALMHPQAAQHALK 373

[Close]

BLAST of CsGy2G000020 vs. NCBI nr
Match: XP_022154627.1 (oligouridylate-binding protein 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 115/156 (73.72%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHRYFHALGAGTIEDVR                                    CS
Sbjct: 263 VTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLCGKPIKCS 322

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 126
           WGSKPTPPGTNSTPLPPPNVGH+ GLSAADLA+YERQM LSKMGAAQALMHPQAAQHALK
Sbjct: 323 WGSKPTPPGTNSTPLPPPNVGHMPGLSAADLAAYERQMTLSKMGAAQALMHPQAAQHALK 382

[Close]

BLAST of CsGy2G000020 vs. TAIR10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-25
Identity = 69/157 (43.95%), Postives = 80/157 (50.96%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR-------------------------------------C 66
           VT +DLHRYFHALGAG IE+VR                                     C
Sbjct: 276 VTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKC 335

Query: 67  SWGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHAL 126
           SWG+KPTPPGT S PL         GLSAADL +YERQ+ALSKM +  ALMH Q  QH L
Sbjct: 336 SWGNKPTPPGTASNPLXXXXXXXXXGLSAADLLNYERQLALSKMASVNALMH-QQGQHPL 395

[Close]

BLAST of CsGy2G000020 vs. TAIR10
Match: AT1G17370.1 (oligouridylate binding protein 1B)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-21
Identity = 64/157 (40.76%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR-------------------------------------C 66
           V+ VDLHR+FH+LGAG IE+VR                                     C
Sbjct: 271 VSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKC 330

Query: 67  SWGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHAL 126
           SWGSKPTP GT S PL         G SA+DL +YERQ+A+SKM     +MH    QHA 
Sbjct: 331 SWGSKPTPAGTASNPLXXXXXXXXXGFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHAF 390

[Close]

BLAST of CsGy2G000020 vs. TAIR10
Match: AT1G54080.2 (oligouridylate-binding protein 1A)

HSP 1 Score: 97.4 bits (241), Expect = 6.6e-21
Identity = 61/158 (38.61%), Postives = 78/158 (49.37%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDV-------------------------------------RC 66
           VT +DLHR F+ LGAG IE+V                                     RC
Sbjct: 284 VTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRC 343

Query: 67  SWGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHAL 126
           SWG+KPTP GT S PLPPP    +  LSA DL +YERQ+AL+K       MHPQ AQH+L
Sbjct: 344 SWGNKPTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLALAK-------MHPQ-AQHSL 403

Query: 127 KQAAMXXXXXXXXXXXXXSQTIYDGGFQNIATTQQLIL 128
           +QA +             +  +YDGG+QN+A   Q ++
Sbjct: 404 RQAGL------GVNVAGGTAAMYDGGYQNVAAAHQQLM 427

[Close]

BLAST of CsGy2G000020 vs. Swiss-Prot
Match: sp|Q9M427|UBP1_NICPL (Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-25
Identity = 69/153 (45.10%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHR+FHALGAG IEDVR                                    CS
Sbjct: 266 VTSVDLHRHFHALGAGVIEDVRIQRDKGFGFVRYSSHAEAARAIQLGNARLLFGKPVKCS 325

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 124
           WGSKPTPPG++S PLPPP +G I GLSA DLA+Y+RQ+AL+KM  AQA M PQ  +    
Sbjct: 326 WGSKPTPPGSSSNPLPPPAIGQIPGLSAMDLAAYQRQLALAKMAGAQAFMQPQGQR---- 385

[Close]

BLAST of CsGy2G000020 vs. Swiss-Prot
Match: sp|Q9LJH8|UBP1C_ARATH (Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 69/157 (43.95%), Postives = 80/157 (50.96%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR-------------------------------------C 66
           VT +DLHRYFHALGAG IE+VR                                     C
Sbjct: 276 VTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKC 335

Query: 67  SWGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHAL 126
           SWG+KPTPPGT S PL         GLSAADL +YERQ+ALSKM +  ALMH Q  QH L
Sbjct: 336 SWGNKPTPPGTASNPLXXXXXXXXXGLSAADLLNYERQLALSKMASVNALMH-QQGQHPL 395

[Close]

BLAST of CsGy2G000020 vs. Swiss-Prot
Match: sp|Q9LQI9|UBP1B_ARATH (Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-20
Identity = 64/157 (40.76%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR-------------------------------------C 66
           V+ VDLHR+FH+LGAG IE+VR                                     C
Sbjct: 271 VSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKC 330

Query: 67  SWGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHAL 126
           SWGSKPTP GT S PL         G SA+DL +YERQ+A+SKM     +MH    QHA 
Sbjct: 331 SWGSKPTPAGTASNPLXXXXXXXXXGFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHAF 390

[Close]

BLAST of CsGy2G000020 vs. Swiss-Prot
Match: sp|Q9SYG4|UBP1A_ARATH (Oligouridylate-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=UBP1A PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-19
Identity = 61/158 (38.61%), Postives = 78/158 (49.37%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDV-------------------------------------RC 66
           VT +DLHR F+ LGAG IE+V                                     RC
Sbjct: 280 VTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRC 339

Query: 67  SWGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHAL 126
           SWG+KPTP GT S PLPPP    +  LSA DL +YERQ+AL+K       MHPQ AQH+L
Sbjct: 340 SWGNKPTPSGTASNPLPPPAPASVPSLSAMDLLAYERQLALAK-------MHPQ-AQHSL 399

Query: 127 KQAAMXXXXXXXXXXXXXSQTIYDGGFQNIATTQQLIL 128
           +QA +             +  +YDGG+QN+A   Q ++
Sbjct: 400 RQAGL------GVNVAGGTAAMYDGGYQNVAAAHQQLM 423

[Close]

BLAST of CsGy2G000020 vs. TrEMBL
Match: tr|A0A0A0LFH4|A0A0A0LFH4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000020 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.2e-45
Identity = 119/156 (76.28%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHRYFHALGAGTIEDVR                                    CS
Sbjct: 263 VTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTNAEAALAIQTGNARVVCGKPIKCS 322

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 126
           WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK
Sbjct: 323 WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 382

[Close]

BLAST of CsGy2G000020 vs. TrEMBL
Match: tr|A0A1S3CBS9|A0A1S3CBS9_CUCME (oligouridylate-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103498989 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.0e-44
Identity = 116/156 (74.36%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHRYFHALGAGTIEDVR                                    CS
Sbjct: 263 VTSVDLHRYFHALGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQTGNARVVCGKPIKCS 322

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 126
           WGSKPTPPGTNSTPLPPPNVGH+ GLSAADLASYERQMA SKMGAAQALMHPQAAQHALK
Sbjct: 323 WGSKPTPPGTNSTPLPPPNVGHMPGLSAADLASYERQMAFSKMGAAQALMHPQAAQHALK 382

[Close]

BLAST of CsGy2G000020 vs. TrEMBL
Match: tr|F6HGN2|F6HGN2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g00700 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.1e-33
Identity = 88/156 (56.41%), Postives = 94/156 (60.26%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHR+FHALGAG IEDVR                                    CS
Sbjct: 271 VTSVDLHRHFHALGAGAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKCS 330

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 126
           WGSKPTP GT+STPLPPP   H+ G+SAAD A+YERQMALSKMG AQ LMHPQ AQHALK
Sbjct: 331 WGSKPTPAGTSSTPLPPPAAPHMPGISAADFAAYERQMALSKMGGAQGLMHPQ-AQHALK 390

[Close]

BLAST of CsGy2G000020 vs. TrEMBL
Match: tr|V5M0B6|V5M0B6_VITVI (TIAR-like protein OS=Vitis vinifera OX=29760 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.1e-33
Identity = 88/156 (56.41%), Postives = 94/156 (60.26%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHR+FHALGAG IEDVR                                    CS
Sbjct: 271 VTSVDLHRHFHALGAGAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKCS 330

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 126
           WGSKPTP GT+STPLPPP   H+ G+SAAD A+YERQMALSKMG AQ LMHPQ AQHALK
Sbjct: 331 WGSKPTPAGTSSTPLPPPAAPHMPGISAADFAAYERQMALSKMGGAQGLMHPQ-AQHALK 390

[Close]

BLAST of CsGy2G000020 vs. TrEMBL
Match: tr|A0A2C9U9Y7|A0A2C9U9Y7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G093200 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.3e-33
Identity = 89/156 (57.05%), Postives = 95/156 (60.90%), Query Frame = 0


Query: 7   VTSVDLHRYFHALGAGTIEDVR------------------------------------CS 66
           VTSVDLHR FHALGAGTIEDVR                                    CS
Sbjct: 260 VTSVDLHRVFHALGAGTIEDVRVQRDKGFGFVRYSAHAEAALAIKMGNARILYGKPIKCS 319

Query: 67  WGSKPTPPGTNSTPLPPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALK 126
           WGSKPT PGT+STPLPPP V H+ GLSAADLA+YERQMALSKM  AQA+MHPQ  QHALK
Sbjct: 320 WGSKPTLPGTSSTPLPPPAVAHMPGLSAADLAAYERQMALSKMAGAQAIMHPQ-GQHALK 379

The following BLAST results are available for this feature:

BLAST of CsGy2G000020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60493.1	1.8e-45	76.28	hypothetical protein Csa_2G000020 [Cucumis sativus]	[more]
XP_011648572.1	1.8e-45	76.28	PREDICTED: auxin response factor 19 isoform X2 [Cucumis sativus]	[more]
XP_008460071.1	4.5e-44	74.36	PREDICTED: oligouridylate-binding protein 1-like [Cucumis melo]	[more]
XP_022154628.1	1.0e-43	73.72	oligouridylate-binding protein 1-like isoform X3 [Momordica charantia]	[more]
XP_022154627.1	1.0e-43	73.72	oligouridylate-binding protein 1-like isoform X2 [Momordica charantia]	[more]

BLAST of CsGy2G000020 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G14100.1	7.5e-25	43.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17370.1	1.3e-21	40.76	oligouridylate binding protein 1B	[more]
AT1G54080.2	6.6e-21	38.61	oligouridylate-binding protein 1A	[more]

BLAST of CsGy2G000020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M427\|UBP1_NICPL	2.5e-25	45.10	Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE...	[more]
sp\|Q9LJH8\|UBP1C_ARATH	1.3e-23	43.95	Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 ...	[more]
sp\|Q9LQI9\|UBP1B_ARATH	2.4e-20	40.76	Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 ...	[more]
sp\|Q9SYG4\|UBP1A_ARATH	1.2e-19	38.61	Oligouridylate-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=UBP1A PE=1 ...	[more]

BLAST of CsGy2G000020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LFH4\|A0A0A0LFH4_CUCSA	1.2e-45	76.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000020 PE=4 SV=1	[more]
tr\|A0A1S3CBS9\|A0A1S3CBS9_CUCME	3.0e-44	74.36	oligouridylate-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103498989 PE...	[more]
tr\|F6HGN2\|F6HGN2_VITVI	4.1e-33	56.41	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g00700 PE=4 SV=...	[more]
tr\|V5M0B6\|V5M0B6_VITVI	4.1e-33	56.41	TIAR-like protein OS=Vitis vinifera OX=29760 PE=2 SV=1	[more]
tr\|A0A2C9U9Y7\|A0A2C9U9Y7_MANES	5.3e-33	57.05	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G093200 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G000020.1	CsGy2G000020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR44160:SF4	SUBFAMILY NOT NAMED	coord: 6..28 coord: 27..126
None	No IPR available	PANTHER	PTHR44160	FAMILY NOT NAMED	coord: 6..28 coord: 27..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G000020	Csa2G000020	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G000020	MELO3C004666	Melon (DHL92) v3.5.1	cgybmeB121
CsGy2G000020	CSPI02G00020	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G000020	CmaCh12G013350	Cucurbita maxima (Rimu)	cgybcmaB185
CsGy2G000020	CmoCh12G013650	Cucurbita moschata (Rifu)	cgybcmoB178
CsGy2G000020	MELO3C004666.2	Melon (DHL92) v3.6.1	cgybmedB119
CsGy2G000020	Bhi06G001366	Wax gourd	cgybwgoB125
CsGy2G000020	Carg18653	Silver-seed gourd	carcgybB0887

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G000020	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G000020	Cucurbita pepo (Zucchini)	cgybcpeB225