CmoCh12G013650 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G013650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Oligouridylate-binding family protein
Location	Cmo_Chr12 : 11715854 .. 11717379 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTTTTTGCAGAGGGTGGCCAAGAGAAATCCAATGAGGAGGCACCTGAGAACAATCCTCAATACACAACCGTATATGTGGGAAATCTTGCTCCGGAGGCAAGGAAATTCTTTTGATAATATAACAGTAACTAATATGTTAATAGTAGTTGTTGAAACAGCTAACTTGGGTGAACCTGCAACTGGATGGCTTGTCAAAGTTCTCTGCCATCTCTAAAAGCATAGGCATGATGGTGATGAGTTTCTAAAATTTATCTAAGAAAGTTTGGCTTGTATCTTTTGTTCGCTTCTTATATGGCCTTTTTGTGGATAGTTGTATTCTTTTATTTATTTTTTGATGAAAGCATGATCTTCAGAATTTATATATCTAATGTGTTGTACAAGCAATCCTTCATTTCTCGATTAAAACCTGAATTAAAAACATGTCAGTTTTGTTATGTGATAGCATGATTATTTTATTATTGCATCATTTTCAGTGTTTATGACTCTTCAGGTTACTTCAGTTGATCTCCACCGTTATTTTCACACCCTTGGTGCCGGGACAATTGAAGATGTTAGGGTACAACGGGACAAAGGTTTTGGGTTTGTGAGATATGGCACTCATGCTGAAGCAGCTTTAGCCATTCAAATGGGCAATGCTCGAGTTGTCTGTGGCAAACCAATTAAGGTACAACCTTAATGAAAAATGTACAATTTTATCCTACTTGAATGTTAATTAATCATCATTTGATCTAGTTCTCAGAGCCAATATATATTTCAACTTGGTTATTTCGGATGGACAATTTGTGTCGAGTGAAAGAGACTAACTGCGAAAATTAGTGCGGGTTAATGTTTTTGCGTGAGTGTTTAGGACTTGAATTTTCATTTATCCACTTAATGTTTTTGTAATCAAATGATGCAGTGTTCGTGGGGTAGCAAGCCAACCCCGCCAGGGACTAATTCTGCCCCTCTTCCACCACCAAATGTGGGACACATGCCAGGTCTGTCTGCCGCCGACCTTGCTGCCTATGAACGGCAAATGGCGTTGAGCAAAATGGGTGCAGCACGAGCGCTAATGCATCCGCAGGCGGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATTGGAATTGGGATTGGTGGTGCTGGCACTAGTCAAACTTTATATGATAGTGGGTTCCAAAATATTGCAACCACCCAACAGCTGATGTATTACTAGGTGTATTTGAATTGCTGTATGATGCATGCTTGTAGTTGTTTTGTGGAACCAAAGAAAGTGTTACGTTCTGGGGATTGTGATGCAAGTACTATATAGCCTGGTGGTGGGGGGGTTTGATTGCAAAGTCATTTTAATTTGTTACTTTTACATTGTTGGTCTAGTTTGTAATATCCTGCTAGAAAAAAAATATGGTGCCACATCTGGAAATAAGCTCCAATCCTTCAATCTCCTTGGCCCTCTTCACATTTTTTTTTCCTGGAAGGATTAGTTCTTTGACTAAATATATTGATTGCTGAATATTGAATAGAGGATGTGAGAA

mRNA sequence

ATGCCTCTTTTTGCAGAGGGTGGCCAAGAGAAATCCAATGAGGAGGCACCTGAGAACAATCCTCAATACACAACCCTAACTTGGGTGAACCTGCAACTGGATGGCTTGTCAAAGTTCTCTGCCATCTCTAAAAGCATAGGCATGATGGTTACTTCAGTTGATCTCCACCGTTATTTTCACACCCTTGGTGCCGGGACAATTGAAGATGTTAGGGTACAACGGGACAAAGGTTTTGGGTTTGTGAGATATGGCACTCATGCTGAAGCAGCTTTAGCCATTCAAATGGGCAATGCTCGAGTTGTCTGTGGCAAACCAATTAAGTGTTCGTGGGGTAGCAAGCCAACCCCGCCAGGGACTAATTCTGCCCCTCTTCCACCACCAAATGTGGGACACATGCCAGGTCTGTCTGCCGCCGACCTTGCTGCCTATGAACGGCAAATGGCGTTGAGCAAAATGGGTGCAGCACGAGCGCTAATGCATCCGCAGGCGGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATTGGAATTGGGATTGGTGGTGCTGGCACTAGTCAAACTTTATATGATAGTGGGTTCCAAAATATTGCAACCACCCAACAGCTGATGTATTACTAGGTGTATTTGAATTGCTGTATGATGCATGCTTGTAGTTGTTTTGTGGAACCAAAGAAAGTGTTACGTTCTGGGGATTGTGATGCAAGTACTATATAGCCTGGTGGTGGGGGGGTTTGATTGCAAAGTCATTTTAATTTGTTACTTTTACATTGTTGGTCTAGTTTGTAATATCCTGCTAGAAAAAAAATATGGTGCCACATCTGGAAATAAGCTCCAATCCTTCAATCTCCTTGGCCCTCTTCACATTTTTTTTTCCTGGAAGGATTAGTTCTTTGACTAAATATATTGATTGCTGAATATTGAATAGAGGATGTGAGAA

Coding sequence (CDS)

ATGCCTCTTTTTGCAGAGGGTGGCCAAGAGAAATCCAATGAGGAGGCACCTGAGAACAATCCTCAATACACAACCCTAACTTGGGTGAACCTGCAACTGGATGGCTTGTCAAAGTTCTCTGCCATCTCTAAAAGCATAGGCATGATGGTTACTTCAGTTGATCTCCACCGTTATTTTCACACCCTTGGTGCCGGGACAATTGAAGATGTTAGGGTACAACGGGACAAAGGTTTTGGGTTTGTGAGATATGGCACTCATGCTGAAGCAGCTTTAGCCATTCAAATGGGCAATGCTCGAGTTGTCTGTGGCAAACCAATTAAGTGTTCGTGGGGTAGCAAGCCAACCCCGCCAGGGACTAATTCTGCCCCTCTTCCACCACCAAATGTGGGACACATGCCAGGTCTGTCTGCCGCCGACCTTGCTGCCTATGAACGGCAAATGGCGTTGAGCAAAATGGGTGCAGCACGAGCGCTAATGCATCCGCAGGCGGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATTGGAATTGGGATTGGTGGTGCTGGCACTAGTCAAACTTTATATGATAGTGGGTTCCAAAATATTGCAACCACCCAACAGCTGATGTATTACTAG

Homology

[Close]

BLAST of CmoCh12G013650 vs. Swiss-Prot
Match: UBP1C_ARATH (Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-54
Identity = 119/204 (58.33%), Postives = 137/204 (67.16%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E G+E  NEE PENN Q+TT+   NL  +               VT +DLHRYFH LGA
Sbjct: 246 SEDGKETLNEETPENNSQFTTVYVGNLAPE---------------VTQLDLHRYFHALGA 305

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIKCSWGSKPTPPGTNSAP 124
           G IE+VRVQRDKGFGFVRY TH EAALAIQMGN +  +  + IKCSWG+KPTPPGT S P
Sbjct: 306 GVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNKPTPPGTASNP 365

Query: 125 LPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGG 184
           LPPP    +PGLSAADL  YERQ+ALSKM +  ALMH Q  QH L+QA        GI  
Sbjct: 366 LPPPAPAPVPGLSAADLLNYERQLALSKMASVNALMHQQG-QHPLRQAH-------GINA 425

Query: 185 AGTSQTLYDSGFQNIATTQQLMYY 208
           AG +  +YD GFQN+A  QQLMYY
Sbjct: 426 AGATAAMYDGGFQNVAAAQQLMYY 426

[Close]

BLAST of CmoCh12G013650 vs. Swiss-Prot
Match: UBP1_NICPL (Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia GN=UBP1 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.1e-54
Identity = 117/204 (57.35%), Postives = 141/204 (69.12%), Query Frame = 1


Query: 5   AEGGQEKS-NEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLG 64
           ++ GQEK  NE+APENNPQYTT+   NL  +               VTSVDLHR+FH LG
Sbjct: 235 SDDGQEKVVNEDAPENNPQYTTVYVGNLAPE---------------VTSVDLHRHFHALG 294

Query: 65  AGTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAP 124
           AG IEDVR+QRDKGFGFVRY +HAEAA AIQ+GNAR++ GKP+KCSWGSKPTPPG++S P
Sbjct: 295 AGVIEDVRIQRDKGFGFVRYSSHAEAARAIQLGNARLLFGKPVKCSWGSKPTPPGSSSNP 354

Query: 125 LPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGG 184
           LPPP +G +PGLSA DLAAY+RQ+AL+KM  A+A M PQ               G  IG 
Sbjct: 355 LPPPAIGQIPGLSAMDLAAYQRQLALAKMAGAQAFMQPQ---------------GQRIGA 406

Query: 185 AGTSQTLYDSGFQNIATTQQLMYY 208
            G  Q +YD G+  IA+TQ  MY+
Sbjct: 415 PG--QGIYDGGYGGIASTQPPMYF 406

[Close]

BLAST of CmoCh12G013650 vs. Swiss-Prot
Match: UBP1B_ARATH (Oligouridylate-binding protein 1B OS=Arabidopsis thaliana GN=UBP1B PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 113/204 (55.39%), Postives = 135/204 (66.18%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E G++ +N EAPENN QYTT+   NL  +               V+ VDLHR+FH+LGA
Sbjct: 241 SEDGKDTTNGEAPENNAQYTTVYVGNLAPE---------------VSQVDLHRHFHSLGA 300

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIKCSWGSKPTPPGTNSAP 124
           G IE+VRVQRDKGFGFVRY TH EAALAIQMGN    + G+ +KCSWGSKPTP GT S P
Sbjct: 301 GVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTASNP 360

Query: 125 LPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGG 184
           LPPP    +PG SA+DL AYERQ+A+SKM     +MH    QHA KQAAM        G 
Sbjct: 361 LPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHAFKQAAM--------GA 418

Query: 185 AGTSQTLYDSGFQNIATTQQLMYY 208
            G++Q +YD G+QN    QQLMYY
Sbjct: 421 TGSNQAIYDGGYQN---AQQLMYY 418

[Close]

BLAST of CmoCh12G013650 vs. Swiss-Prot
Match: UBP1A_ARATH (Oligouridylate-binding protein 1A OS=Arabidopsis thaliana GN=UBP1A PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-50
Identity = 115/205 (56.10%), Postives = 140/205 (68.29%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E G+E SNE+APENNPQ+TT+   NL  +               VT +DLHR F+TLGA
Sbjct: 250 SEDGRELSNEDAPENNPQFTTVYVGNLSPE---------------VTQLDLHRLFYTLGA 309

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIKCSWGSKPTPPGTNSAP 124
           G IE+VRVQRDKGFGFVRY TH EAALAIQMGNA+  +  + I+CSWG+KPTP GT S P
Sbjct: 310 GVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPSGTASNP 369

Query: 125 LPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGG 184
           LPPP    +P LSA DL AYERQ+AL+KM       HPQA QH+L+QA      G+G+  
Sbjct: 370 LPPPAPASVPSLSAMDLLAYERQLALAKM-------HPQA-QHSLRQA------GLGVNV 425

Query: 185 AGTSQTLYDSGFQNIATT-QQLMYY 208
           AG +  +YD G+QN+A   QQLMYY
Sbjct: 430 AGGTAAMYDGGYQNVAAAHQQLMYY 425

[Close]

BLAST of CmoCh12G013650 vs. TrEMBL
Match: A0A0A0LFH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000020 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.4e-85
Identity = 165/203 (81.28%), Postives = 177/203 (87.19%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           ++GGQEKSNE+APENNPQYTT+   NL  +               VTSVDLHRYFH LGA
Sbjct: 233 SDGGQEKSNEDAPENNPQYTTVYVGNLAPE---------------VTSVDLHRYFHALGA 292

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPL 124
           GTIEDVRVQRDKGFGFVRY T+AEAALAIQ GNARVVCGKPIKCSWGSKPTPPGTNS PL
Sbjct: 293 GTIEDVRVQRDKGFGFVRYSTNAEAALAIQTGNARVVCGKPIKCSWGSKPTPPGTNSTPL 352

Query: 125 PPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGGA 184
           PPPNVGH+ GLSAADLA+YERQMALSKMGAA+ALMHPQAAQHALKQAAMGMG+GIG+GGA
Sbjct: 353 PPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALKQAAMGMGMGIGMGGA 412

Query: 185 GTSQTLYDSGFQNIATTQQLMYY 208
           GTSQT+YD GFQNIATTQQLMYY
Sbjct: 413 GTSQTIYDGGFQNIATTQQLMYY 420

[Close]

BLAST of CmoCh12G013650 vs. TrEMBL
Match: F6HGN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00700 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.1e-70
Identity = 144/203 (70.94%), Postives = 158/203 (77.83%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E G++KSN+EAPENN QYTT+   NL  +               VTSVDLHR+FH LGA
Sbjct: 241 SEDGKDKSNDEAPENNLQYTTVYVGNLAPE---------------VTSVDLHRHFHALGA 300

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPL 124
           G IEDVRVQRDKGFGFVRY THAEAALAIQMGNAR++CGKPIKCSWGSKPTP GT+S PL
Sbjct: 301 GAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKCSWGSKPTPAGTSSTPL 360

Query: 125 PPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGGA 184
           PPP   HMPG+SAAD AAYERQMALSKMG A+ LMHPQ AQHALKQ AMGMG G      
Sbjct: 361 PPPAAPHMPGISAADFAAYERQMALSKMGGAQGLMHPQ-AQHALKQTAMGMGAG------ 420

Query: 185 GTSQTLYDSGFQNIATTQQLMYY 208
           G+SQ +YD GFQN ATTQQLMYY
Sbjct: 421 GSSQAIYDGGFQNAATTQQLMYY 421

[Close]

BLAST of CmoCh12G013650 vs. TrEMBL
Match: V5M0B6_VITVI (TIAR-like protein OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-69
Identity = 143/203 (70.44%), Postives = 157/203 (77.34%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E G++KSN+EAPENN  YTT+   NL  +               VTSVDLHR+FH LGA
Sbjct: 241 SEDGKDKSNDEAPENNLPYTTVYVGNLAPE---------------VTSVDLHRHFHALGA 300

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPL 124
           G IEDVRVQRDKGFGFVRY THAEAALAIQMGNAR++CGKPIKCSWGSKPTP GT+S PL
Sbjct: 301 GAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKCSWGSKPTPAGTSSTPL 360

Query: 125 PPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGGA 184
           PPP   HMPG+SAAD AAYERQMALSKMG A+ LMHPQ AQHALKQ AMGMG G      
Sbjct: 361 PPPAAPHMPGISAADFAAYERQMALSKMGGAQGLMHPQ-AQHALKQTAMGMGAG------ 420

Query: 185 GTSQTLYDSGFQNIATTQQLMYY 208
           G+SQ +YD GFQN ATTQQLMYY
Sbjct: 421 GSSQAIYDGGFQNAATTQQLMYY 421

[Close]

BLAST of CmoCh12G013650 vs. TrEMBL
Match: A0A061GK43_THECC (Oligouridylate binding protein 1B isoform 2 OS=Theobroma cacao GN=TCM_037492 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-69
Identity = 142/205 (69.27%), Postives = 160/205 (78.05%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E GQEK N++APENNPQYTT+   NL  +               VTSVDLHR+FH LGA
Sbjct: 234 SEEGQEKPNDDAPENNPQYTTVYVGNLAPE---------------VTSVDLHRHFHVLGA 293

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPL 124
           GTIEDVR+QRDKGFGFVRY +HAEAALAIQ+GNAR++CGKPIKCSWGSKPTPPGT+S PL
Sbjct: 294 GTIEDVRLQRDKGFGFVRYSSHAEAALAIQVGNARILCGKPIKCSWGSKPTPPGTSSVPL 353

Query: 125 PPPNVGHMPGLSAADLAAYERQMALSKMGAARA--LMHPQAAQHALKQAAMGMGIGIGIG 184
           PPP   HMPG SAADLAAYERQMALSK G A+A  +MHPQ +QH LKQAA+GMG      
Sbjct: 354 PPPAAAHMPGFSAADLAAYERQMALSKYGGAQAMGMMHPQ-SQHVLKQAALGMGT----- 413

Query: 185 GAGTSQTLYDSGFQNIATTQQLMYY 208
            AG SQ +YD GFQN+ATTQQLMYY
Sbjct: 414 -AGASQAIYDGGFQNVATTQQLMYY 416

[Close]

BLAST of CmoCh12G013650 vs. TrEMBL
Match: A0A061GSY2_THECC (Oligouridylate binding protein 1B isoform 1 OS=Theobroma cacao GN=TCM_037492 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-69
Identity = 142/205 (69.27%), Postives = 160/205 (78.05%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E GQEK N++APENNPQYTT+   NL  +               VTSVDLHR+FH LGA
Sbjct: 233 SEEGQEKPNDDAPENNPQYTTVYVGNLAPE---------------VTSVDLHRHFHVLGA 292

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPL 124
           GTIEDVR+QRDKGFGFVRY +HAEAALAIQ+GNAR++CGKPIKCSWGSKPTPPGT+S PL
Sbjct: 293 GTIEDVRLQRDKGFGFVRYSSHAEAALAIQVGNARILCGKPIKCSWGSKPTPPGTSSVPL 352

Query: 125 PPPNVGHMPGLSAADLAAYERQMALSKMGAARA--LMHPQAAQHALKQAAMGMGIGIGIG 184
           PPP   HMPG SAADLAAYERQMALSK G A+A  +MHPQ +QH LKQAA+GMG      
Sbjct: 353 PPPAAAHMPGFSAADLAAYERQMALSKYGGAQAMGMMHPQ-SQHVLKQAALGMGT----- 412

Query: 185 GAGTSQTLYDSGFQNIATTQQLMYY 208
            AG SQ +YD GFQN+ATTQQLMYY
Sbjct: 413 -AGASQAIYDGGFQNVATTQQLMYY 415

[Close]

BLAST of CmoCh12G013650 vs. TAIR10
Match: AT3G14100.1 (AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-55
Identity = 119/204 (58.33%), Postives = 137/204 (67.16%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E G+E  NEE PENN Q+TT+   NL  +               VT +DLHRYFH LGA
Sbjct: 246 SEDGKETLNEETPENNSQFTTVYVGNLAPE---------------VTQLDLHRYFHALGA 305

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIKCSWGSKPTPPGTNSAP 124
           G IE+VRVQRDKGFGFVRY TH EAALAIQMGN +  +  + IKCSWG+KPTPPGT S P
Sbjct: 306 GVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNKPTPPGTASNP 365

Query: 125 LPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGG 184
           LPPP    +PGLSAADL  YERQ+ALSKM +  ALMH Q  QH L+QA        GI  
Sbjct: 366 LPPPAPAPVPGLSAADLLNYERQLALSKMASVNALMHQQG-QHPLRQAH-------GINA 425

Query: 185 AGTSQTLYDSGFQNIATTQQLMYY 208
           AG +  +YD GFQN+A  QQLMYY
Sbjct: 426 AGATAAMYDGGFQNVAAAQQLMYY 426

[Close]

BLAST of CmoCh12G013650 vs. TAIR10
Match: AT1G17370.1 (AT1G17370.1 oligouridylate binding protein 1B)

HSP 1 Score: 204.1 bits (518), Expect = 8.1e-53
Identity = 113/204 (55.39%), Postives = 135/204 (66.18%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E G++ +N EAPENN QYTT+   NL  +               V+ VDLHR+FH+LGA
Sbjct: 241 SEDGKDTTNGEAPENNAQYTTVYVGNLAPE---------------VSQVDLHRHFHSLGA 300

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIKCSWGSKPTPPGTNSAP 124
           G IE+VRVQRDKGFGFVRY TH EAALAIQMGN    + G+ +KCSWGSKPTP GT S P
Sbjct: 301 GVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTASNP 360

Query: 125 LPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGG 184
           LPPP    +PG SA+DL AYERQ+A+SKM     +MH    QHA KQAAM        G 
Sbjct: 361 LPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHAFKQAAM--------GA 418

Query: 185 AGTSQTLYDSGFQNIATTQQLMYY 208
            G++Q +YD G+QN    QQLMYY
Sbjct: 421 TGSNQAIYDGGYQN---AQQLMYY 418

[Close]

BLAST of CmoCh12G013650 vs. TAIR10
Match: AT1G54080.2 (AT1G54080.2 oligouridylate-binding protein 1A)

HSP 1 Score: 201.1 bits (510), Expect = 6.9e-52
Identity = 115/205 (56.10%), Postives = 140/205 (68.29%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E G+E SNE+APENNPQ+TT+   NL  +               VT +DLHR F+TLGA
Sbjct: 254 SEDGRELSNEDAPENNPQFTTVYVGNLSPE---------------VTQLDLHRLFYTLGA 313

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNAR-VVCGKPIKCSWGSKPTPPGTNSAP 124
           G IE+VRVQRDKGFGFVRY TH EAALAIQMGNA+  +  + I+CSWG+KPTP GT S P
Sbjct: 314 GVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPSGTASNP 373

Query: 125 LPPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGG 184
           LPPP    +P LSA DL AYERQ+AL+KM       HPQA QH+L+QA      G+G+  
Sbjct: 374 LPPPAPASVPSLSAMDLLAYERQLALAKM-------HPQA-QHSLRQA------GLGVNV 429

Query: 185 AGTSQTLYDSGFQNIATT-QQLMYY 208
           AG +  +YD G+QN+A   QQLMYY
Sbjct: 434 AGGTAAMYDGGYQNVAAAHQQLMYY 429

[Close]

BLAST of CmoCh12G013650 vs. NCBI nr
Match: gi|659071491|ref|XP_008460071.1| (PREDICTED: oligouridylate-binding protein 1-like [Cucumis melo])

HSP 1 Score: 329.7 bits (844), Expect = 3.6e-87
Identity = 167/203 (82.27%), Postives = 177/203 (87.19%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           ++GGQEKSNE+APENNPQYTT+   NL  +               VTSVDLHRYFH LGA
Sbjct: 233 SDGGQEKSNEDAPENNPQYTTVYVGNLAPE---------------VTSVDLHRYFHALGA 292

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPL 124
           GTIEDVRVQRDKGFGFVRY THAEAALAIQ GNARVVCGKPIKCSWGSKPTPPGTNS PL
Sbjct: 293 GTIEDVRVQRDKGFGFVRYSTHAEAALAIQTGNARVVCGKPIKCSWGSKPTPPGTNSTPL 352

Query: 125 PPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGGA 184
           PPPNVGHMPGLSAADLA+YERQMA SKMGAA+ALMHPQAAQHALKQAAMGMG+GIG+GGA
Sbjct: 353 PPPNVGHMPGLSAADLASYERQMAFSKMGAAQALMHPQAAQHALKQAAMGMGMGIGMGGA 412

Query: 185 GTSQTLYDSGFQNIATTQQLMYY 208
           GTSQT+YD GFQNIATTQQLMYY
Sbjct: 413 GTSQTIYDGGFQNIATTQQLMYY 420

[Close]

BLAST of CmoCh12G013650 vs. NCBI nr
Match: gi|700205374|gb|KGN60493.1| (hypothetical protein Csa_2G000020 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 2.0e-85
Identity = 165/203 (81.28%), Postives = 177/203 (87.19%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           ++GGQEKSNE+APENNPQYTT+   NL  +               VTSVDLHRYFH LGA
Sbjct: 233 SDGGQEKSNEDAPENNPQYTTVYVGNLAPE---------------VTSVDLHRYFHALGA 292

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPL 124
           GTIEDVRVQRDKGFGFVRY T+AEAALAIQ GNARVVCGKPIKCSWGSKPTPPGTNS PL
Sbjct: 293 GTIEDVRVQRDKGFGFVRYSTNAEAALAIQTGNARVVCGKPIKCSWGSKPTPPGTNSTPL 352

Query: 125 PPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGGA 184
           PPPNVGH+ GLSAADLA+YERQMALSKMGAA+ALMHPQAAQHALKQAAMGMG+GIG+GGA
Sbjct: 353 PPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALKQAAMGMGMGIGMGGA 412

Query: 185 GTSQTLYDSGFQNIATTQQLMYY 208
           GTSQT+YD GFQNIATTQQLMYY
Sbjct: 413 GTSQTIYDGGFQNIATTQQLMYY 420

[Close]

BLAST of CmoCh12G013650 vs. NCBI nr
Match: gi|778665474|ref|XP_011648572.1| (PREDICTED: auxin response factor 19 isoform X2 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 2.0e-85
Identity = 165/203 (81.28%), Postives = 177/203 (87.19%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           ++GGQEKSNE+APENNPQYTT+   NL  +               VTSVDLHRYFH LGA
Sbjct: 757 SDGGQEKSNEDAPENNPQYTTVYVGNLAPE---------------VTSVDLHRYFHALGA 816

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPL 124
           GTIEDVRVQRDKGFGFVRY T+AEAALAIQ GNARVVCGKPIKCSWGSKPTPPGTNS PL
Sbjct: 817 GTIEDVRVQRDKGFGFVRYSTNAEAALAIQTGNARVVCGKPIKCSWGSKPTPPGTNSTPL 876

Query: 125 PPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGGA 184
           PPPNVGH+ GLSAADLA+YERQMALSKMGAA+ALMHPQAAQHALKQAAMGMG+GIG+GGA
Sbjct: 877 PPPNVGHISGLSAADLASYERQMALSKMGAAQALMHPQAAQHALKQAAMGMGMGIGMGGA 936

Query: 185 GTSQTLYDSGFQNIATTQQLMYY 208
           GTSQT+YD GFQNIATTQQLMYY
Sbjct: 937 GTSQTIYDGGFQNIATTQQLMYY 944

[Close]

BLAST of CmoCh12G013650 vs. NCBI nr
Match: gi|731406255|ref|XP_010656097.1| (PREDICTED: oligouridylate-binding protein 1 isoform X1 [Vitis vinifera])

HSP 1 Score: 273.5 bits (698), Expect = 3.1e-70
Identity = 144/203 (70.94%), Postives = 158/203 (77.83%), Query Frame = 1


Query: 5   AEGGQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGA 64
           +E G++KSN+EAPENN QYTT+   NL  +               VTSVDLHR+FH LGA
Sbjct: 241 SEDGKDKSNDEAPENNLQYTTVYVGNLAPE---------------VTSVDLHRHFHALGA 300

Query: 65  GTIEDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPL 124
           G IEDVRVQRDKGFGFVRY THAEAALAIQMGNAR++CGKPIKCSWGSKPTP GT+S PL
Sbjct: 301 GAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKCSWGSKPTPAGTSSTPL 360

Query: 125 PPPNVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGGA 184
           PPP   HMPG+SAAD AAYERQMALSKMG A+ LMHPQ AQHALKQ AMGMG G      
Sbjct: 361 PPPAAPHMPGISAADFAAYERQMALSKMGGAQGLMHPQ-AQHALKQTAMGMGAG------ 420

Query: 185 GTSQTLYDSGFQNIATTQQLMYY 208
           G+SQ +YD GFQN ATTQQLMYY
Sbjct: 421 GSSQAIYDGGFQNAATTQQLMYY 421

[Close]

BLAST of CmoCh12G013650 vs. NCBI nr
Match: gi|731406257|ref|XP_010656098.1| (PREDICTED: oligouridylate-binding protein 1 isoform X2 [Vitis vinifera])

HSP 1 Score: 271.9 bits (694), Expect = 9.0e-70
Identity = 143/200 (71.50%), Postives = 156/200 (78.00%), Query Frame = 1


Query: 8   GQEKSNEEAPENNPQYTTLTWVNLQLDGLSKFSAISKSIGMMVTSVDLHRYFHTLGAGTI 67
           G++KSN+EAPENN QYTT+   NL  +               VTSVDLHR+FH LGAG I
Sbjct: 243 GKDKSNDEAPENNLQYTTVYVGNLAPE---------------VTSVDLHRHFHALGAGAI 302

Query: 68  EDVRVQRDKGFGFVRYGTHAEAALAIQMGNARVVCGKPIKCSWGSKPTPPGTNSAPLPPP 127
           EDVRVQRDKGFGFVRY THAEAALAIQMGNAR++CGKPIKCSWGSKPTP GT+S PLPPP
Sbjct: 303 EDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILCGKPIKCSWGSKPTPAGTSSTPLPPP 362

Query: 128 NVGHMPGLSAADLAAYERQMALSKMGAARALMHPQAAQHALKQAAMGMGIGIGIGGAGTS 187
              HMPG+SAAD AAYERQMALSKMG A+ LMHPQA QHALKQ AMGMG G      G+S
Sbjct: 363 AAPHMPGISAADFAAYERQMALSKMGGAQGLMHPQA-QHALKQTAMGMGAG------GSS 420

Query: 188 QTLYDSGFQNIATTQQLMYY 208
           Q +YD GFQN ATTQQLMYY
Sbjct: 423 QAIYDGGFQNAATTQQLMYY 420

The following BLAST results are available for this feature:

BLAST of CmoCh12G013650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBP1C_ARATH	1.8e-54	58.33	Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1	[more]
UBP1_NICPL	3.1e-54	57.35	Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia GN=UBP1 PE=2 SV=1	[more]
UBP1B_ARATH	1.4e-51	55.39	Oligouridylate-binding protein 1B OS=Arabidopsis thaliana GN=UBP1B PE=1 SV=1	[more]
UBP1A_ARATH	1.2e-50	56.10	Oligouridylate-binding protein 1A OS=Arabidopsis thaliana GN=UBP1A PE=1 SV=1	[more]

BLAST of CmoCh12G013650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFH4_CUCSA	1.4e-85	81.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000020 PE=4 SV=1	[more]
F6HGN2_VITVI	2.1e-70	70.94	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00700 PE=4 SV=...	[more]
V5M0B6_VITVI	1.1e-69	70.44	TIAR-like protein OS=Vitis vinifera PE=2 SV=1	[more]
A0A061GK43_THECC	1.4e-69	69.27	Oligouridylate binding protein 1B isoform 2 OS=Theobroma cacao GN=TCM_037492 PE=...	[more]
A0A061GSY2_THECC	1.4e-69	69.27	Oligouridylate binding protein 1B isoform 1 OS=Theobroma cacao GN=TCM_037492 PE=...	[more]

BLAST of CmoCh12G013650 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G14100.1	1.0e-55	58.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17370.1	8.1e-53	55.39	oligouridylate binding protein 1B	[more]
AT1G54080.2	6.9e-52	56.10	oligouridylate-binding protein 1A	[more]

BLAST of CmoCh12G013650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071491\|ref\|XP_008460071.1\|	3.6e-87	82.27	PREDICTED: oligouridylate-binding protein 1-like [Cucumis melo]	[more]
gi\|700205374\|gb\|KGN60493.1\|	2.0e-85	81.28	hypothetical protein Csa_2G000020 [Cucumis sativus]	[more]
gi\|778665474\|ref\|XP_011648572.1\|	2.0e-85	81.28	PREDICTED: auxin response factor 19 isoform X2 [Cucumis sativus]	[more]
gi\|731406255\|ref\|XP_010656097.1\|	3.1e-70	70.94	PREDICTED: oligouridylate-binding protein 1 isoform X1 [Vitis vinifera]	[more]
gi\|731406257\|ref\|XP_010656098.1\|	9.0e-70	71.50	PREDICTED: oligouridylate-binding protein 1 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013650.1	CmoCh12G013650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 50..107 score: 9.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 30..109 score: 3.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 29..113 score: 11
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 8..115 score: 1.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 50..120 score: 1.11

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G013650	CmaCh12G013350	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G013650	CsGy2G000020	Cucumber (Gy14) v2	cgybcmoB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G013650	Silver-seed gourd	carcmoB0130
CmoCh12G013650	Silver-seed gourd	carcmoB0776
CmoCh12G013650	Silver-seed gourd	carcmoB1207
CmoCh12G013650	Cucumber (Chinese Long) v3	cmocucB0192
CmoCh12G013650	Watermelon (97103) v2	cmowmbB159
CmoCh12G013650	Wax gourd	cmowgoB0188
CmoCh12G013650	Cucurbita moschata (Rifu)	cmocmoB080
CmoCh12G013650	Cucurbita moschata (Rifu)	cmocmoB148
CmoCh12G013650	Cucumber (Gy14) v1	cgycmoB0281
CmoCh12G013650	Cucurbita maxima (Rimu)	cmacmoB080
CmoCh12G013650	Cucurbita maxima (Rimu)	cmacmoB121
CmoCh12G013650	Wild cucumber (PI 183967)	cmocpiB166
CmoCh12G013650	Melon (DHL92) v3.5.1	cmomeB161
CmoCh12G013650	Watermelon (Charleston Gray)	cmowcgB137
CmoCh12G013650	Watermelon (Charleston Gray)	cmowcgB147
CmoCh12G013650	Watermelon (97103) v1	cmowmB142
CmoCh12G013650	Watermelon (97103) v1	cmowmB159
CmoCh12G013650	Cucurbita pepo (Zucchini)	cmocpeB147
CmoCh12G013650	Cucurbita pepo (Zucchini)	cmocpeB160
CmoCh12G013650	Cucurbita pepo (Zucchini)	cmocpeB170
CmoCh12G013650	Cucurbita pepo (Zucchini)	cmocpeB176
CmoCh12G013650	Bottle gourd (USVL1VR-Ls)	cmolsiB150
CmoCh12G013650	Melon (DHL92) v3.6.1	cmomedB180