CmaCh06G016690 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G016690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr06 : 10309532 .. 10310592 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGTGAAAATGGGCATTTTCACGTCTCACGACCAAATATAAAAGGTGGTGAGCGGAGGCGCACTTGATGAGTCAGATTTCAGAAACTGAAGCACAGAAAGGTAGGAATTATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTAGTTCTGTTTCTTCTACTATCCCCCGGCCTTCTGTTTCAAGTCCCCGGCCACCATCATTTCATCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTCGCCCTAATTTGCCTCTTCACCTTCGTCCTTCAACTTCACATCTACCTCTAATCCTCCCTAATCGCAATCGCAATCGCAATCGCAATCGGATCGCGATTCTTCGAAATTCCAGGTATATATTCTCTGTTTCTTCGTTTGATTCTGCTTGTGTTTCTTACTGCTCTGTCTGCAACTCATCTTCGAAATCTCGAGATCAATTTCATGTTGCGTTTCTGTTTAACGGATTCGGCGAAGCCATATTGTTGTAATTTGTGTTAGTTTGAGTGATTTTAGTATTCACAGTCAATTGATTCCTAATCCATGTGATATATTCCAGATTTTGGATTCACTTCTTAGCGTTTTTATTGTTTAATCTATCGAGTTTATTTCAATTGGTGAACTTGTGATGATGAACACATGGAATCACAAAAATCAATCGAGACATTTCTTTGGACGAATAGTGATTAGCAAAAGATAAGTCTCAAGTCAAGTGATGGTAAGCGTTAGGTCAAATTATTCATACATTATTATTTCATGTGGGGCAGGTTATTTATTATATATTTATAAGTATTTCAAAGTGGGTGGATTTTCTCATTGGTTCATATCATTCCTTCGTATTTTCAATTCATCTCTTTATGCTACCAAATATGCTCCACCAAACATTTCTTTTTCCGTTTAATTGCAAATTAACCCTTATAATTTCAAATATTAAAATTATTCCATATTTTGCTAAAATTTCTTATAACTAGTTTCTTCCTTCTAAATATTAAATACAAAATTTAATTTAATTTTTTTTTTTTTTTTGTAGGGTATAG

mRNA sequence

AAAAGTGAAAATGGGCATTTTCACGTCTCACGACCAAATATAAAAGGTGGTGAGCGGAGGCGCACTTGATGAGTCAGATTTCAGAAACTGAAGCACAGAAAGGTAGGAATTATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTAGTTCTGTTTCTTCTACTATCCCCCGGCCTTCTGTTTCAAGTCCCCGGCCACCATCATTTCATCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTCGCCCTAATTTGCCTCTTCACCTTCGTCCTTCAACTTCACATCTACCTCTAATCCTCCCTAATCGCAATCGCAATCGCAATCGCAATCGGATCGCGATTCTTCGAAATTCCAGGGTATAG

Coding sequence (CDS)

ATGAGTCAGATTTCAGAAACTGAAGCACAGAAAGGTAGGAATTATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTAGTTCTGTTTCTTCTACTATCCCCCGGCCTTCTGTTTCAAGTCCCCGGCCACCATCATTTCATCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTCGCCCTAATTTGCCTCTTCACCTTCGTCCTTCAACTTCACATCTACCTCTAATCCTCCCTAATCGCAATCGCAATCGCAATCGCAATCGGATCGCGATTCTTCGAAATTCCAGGGTATAG

Protein sequence

MSQISETEAQKGRNYGGLGPSFRGCSSVSSTIPRPSVSSPRPPSFHPVRQLPNQRRLHFHPFPHLLRPNLPLHLRPSTSHLPLILPNRNRNRNRNRIAILRNSRV
Homology
[Close]
BLAST of CmaCh06G016690 vs. TrEMBL
Match: A0A0A0KYY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012420 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-22
Identity = 56/79 (70.89%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 11 KGRNYGGLGPSFRGCSSVSSTIPRPSVSSPRPPSFHPVRQLPNQRRLHFHPFPHLLRPNL 70
          K  N GGLGPSFRGC S+  +IPRPS+ +PRP     VRQLPNQRRLHFHPFPHLL PN 
Sbjct: 19 KEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLPNQRRLHFHPFPHLLCPNF 78

Query: 71 PLHLRPSTSHLPLILPNRN 90
          PLHLR STSHL LI+P  N
Sbjct: 79 PLHLRHSTSHLHLIIPKSN 97

[Close]
BLAST of CmaCh06G016690 vs. NCBI nr
Match: gi|700197888|gb|KGN53046.1| (hypothetical protein Csa_4G012420 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 56/79 (70.89%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 11 KGRNYGGLGPSFRGCSSVSSTIPRPSVSSPRPPSFHPVRQLPNQRRLHFHPFPHLLRPNL 70
          K  N GGLGPSFRGC S+  +IPRPS+ +PRP     VRQLPNQRRLHFHPFPHLL PN 
Sbjct: 19 KEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLPNQRRLHFHPFPHLLCPNF 78

Query: 71 PLHLRPSTSHLPLILPNRN 90
          PLHLR STSHL LI+P  N
Sbjct: 79 PLHLRHSTSHLHLIIPKSN 97

The following BLAST results are available for this feature:
BLAST of CmaCh06G016690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh06G016690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYY0_CUCSA1.4e-2270.89Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012420 PE=4 SV=1[more]
BLAST of CmaCh06G016690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh06G016690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197888|gb|KGN53046.1|2.1e-2270.89hypothetical protein Csa_4G012420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G016690.1CmaCh06G016690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh06G016690Csa4G012420Cucumber (Chinese Long) v2cmacuB835
CmaCh06G016690Carg15465Silver-seed gourdcarcmaB0974
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G016690Cucumber (Gy14) v2cgybcmaB560
CmaCh06G016690Melon (DHL92) v3.6.1cmamedB875
CmaCh06G016690Silver-seed gourdcarcmaB0158
CmaCh06G016690Cucumber (Chinese Long) v3cmacucB0987
CmaCh06G016690Watermelon (97103) v2cmawmbB867
CmaCh06G016690Wax gourdcmawgoB1023
CmaCh06G016690Cucurbita maxima (Rimu)cmacmaB284
CmaCh06G016690Cucumber (Gy14) v1cgycmaB0205
CmaCh06G016690Cucurbita moschata (Rifu)cmacmoB797
CmaCh06G016690Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G016690Wild cucumber (PI 183967)cmacpiB850
CmaCh06G016690Melon (DHL92) v3.5.1cmameB774
CmaCh06G016690Watermelon (Charleston Gray)cmawcgB747
CmaCh06G016690Watermelon (97103) v1cmawmB794
CmaCh06G016690Cucurbita pepo (Zucchini)cmacpeB837
CmaCh06G016690Cucurbita pepo (Zucchini)cmacpeB853
CmaCh06G016690Bottle gourd (USVL1VR-Ls)cmalsiB777